TCONS_00043050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043050
Unique NameTCONS_00043050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043050 ID=TCONS_00043050|Name=TCONS_00043050|organism=Clytia hemisphaerica|type=transcript|length=648bp
AGGACTTAACACTTATAGAAGCATGCTTTGTTGACTCTGCATTGATCTTG
CGACCAACTCTCATCATGGCAGTGAGAGATAATGATGGTGTTGGTTTGCT
TGATACATCGTCATCATCACCAAGGGTAGATTTCTTTCTCATCATTAATG
ATACCGATTTTTCTGGCTCTTTTCTAAATTTGCTTTCGGGGTAGATGGTG
TCTGTCAGAAATGACGAACTTATTGGTGAAAATGGTTTTTGAATAAAACG
AACATGTATAAGAGACACATCAATTTGGTCGATGCTAGTGCAAGAGGGGC
CGTGGACGCCAGCAAGAACATCACAAACCAAATACTTTAAGGCAGGGTCT
GTTTCTTTAAAGAATTTGTTGCAAGCCTCCTTTATACCTTCGATTGTGAC
ACTACTGTGGAAATACGGTACAAATTCTCTAGCCCCAATGGTGCTATATT
TGGGTTTGCTTATTCCGGTTAGTTCTGCTCCCAGTCTTTGAATAAGCAGT
TCTTCGCGTGACAGGATCTTTGCAATTTTGGTTGAGTGTTGTGATTTTCC
TTTCGCAGGTTGTTTGGAGCTTGTTCGTTTTTTGGATGCAGCAGCACCAA
TTTTTGCCCAGTCCGGATTGCTTCTTTTACGATCAGACATTTTATTAT
Run BLAST on NCBI

protein sequence of TCONS_00043050-protein

>TCONS_00043050-protein ID=TCONS_00043050-protein|Name=TCONS_00043050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
NKMSDRKRSNPDWAKIGAAASKKRTSSKQPAKGKSQHSTKIAKILSREEL
LIQRLGAELTGISKPKYSTIGAREFVPYFHSSVTIEGIKEACNKFFKETD
PALKYLVCDVLAGVHGPSCTSIDQIDVSLIHVRFIQKPFSPISSSFLTDT
IYPESKFRKEPEKSVSLMMRKKSTLGDDDDVSSKPTPSLSLTAMMRVGRK
INAESTKHASISVKS
Run BLAST on NCBI

transcript from alignment at sc0003882:8210..8857

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043050 ID=TCONS_00043050|Name=TCONS_00043050|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0003882:8210..8857 (Clytia hemisphaerica)
ATAATAAAATGTCTGATCGTAAAAGAAGCAATCCGGACTGGGCAAAAATT
GGTGCTGCTGCATCCAAAAAACGAACAAGCTCCAAACAACCTGCGAAAGG
AAAATCACAACACTCAACCAAAATTGCAAAGATCCTGTCACGCGAAGAAC
TGCTTATTCAAAGACTGGGAGCAGAACTAACCGGAATAAGCAAACCCAAA
TATAGCACCATTGGGGCTAGAGAATTTGTACCGTATTTCCACAGTAGTGT
CACAATCGAAGGTATAAAGGAGGCTTGCAACAAATTCTTTAAAGAAACAG
ACCCTGCCTTAAAGTATTTGGTTTGTGATGTTCTTGCTGGCGTCCACGGC
CCCTCTTGCACTAGCATCGACCAAATTGATGTGTCTCTTATACATGTTCG
TTTTATTCAAAAACCATTTTCACCAATAAGTTCGTCATTTCTGACAGACA
CCATCTACCCCGAAAGCAAATTTAGAAAAGAGCCAGAAAAATCGGTATCA
TTAATGATGAGAAAGAAATCTACCCTTGGTGATGATGACGATGTATCAAG
CAAACCAACACCATCATTATCTCTCACTGCCATGATGAGAGTTGGTCGCA
AGATCAATGCAGAGTCAACAAAGCATGCTTCTATAAGTGTTAAGTCCT

Coding sequence (CDS) from alignment at sc0003882:8210..8857

>TCONS_00043050 ID=TCONS_00043050|Name=TCONS_00043050|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0003882:8210..8857 (Clytia hemisphaerica)
AATAAAATGTCTGATCGTAAAAGAAGCAATCCGGACTGGGCAAAAATTGG
TGCTGCTGCATCCAAAAAACGAACAAGCTCCAAACAACCTGCGAAAGGAA
AATCACAACACTCAACCAAAATTGCAAAGATCCTGTCACGCGAAGAACTG
CTTATTCAAAGACTGGGAGCAGAACTAACCGGAATAAGCAAACCCAAATA
TAGCACCATTGGGGCTAGAGAATTTGTACCGTATTTCCACAGTAGTGTCA
CAATCGAAGGTATAAAGGAGGCTTGCAACAAATTCTTTAAAGAAACAGAC
CCTGCCTTAAAGTATTTGGTTTGTGATGTTCTTGCTGGCGTCCACGGCCC
CTCTTGCACTAGCATCGACCAAATTGATGTGTCTCTTATACATGTTCGTT
TTATTCAAAAACCATTTTCACCAATAAGTTCGTCATTTCTGACAGACACC
ATCTACCCCGAAAGCAAATTTAGAAAAGAGCCAGAAAAATCGGTATCATT
AATGATGAGAAAGAAATCTACCCTTGGTGATGATGACGATGTATCAAGCA
AACCAACACCATCATTATCTCTCACTGCCATGATGAGAGTTGGTCGCAAG
ATCAATGCAGAGTCAACAAAGCATGCTTCTATAAGTGTTAAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026792XLOC_026792Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043050-proteinTCONS_00043050-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043050-exon-sc0003882-1491911889:8210..8857TCONS_00043050-exon-sc0003882-1491911889:8210..8857Clytia hemisphaericaexon
TCONS_00043050-exon-sc0003882-1510915933:8210..8857TCONS_00043050-exon-sc0003882-1510915933:8210..8857Clytia hemisphaericaexon
TCONS_00043050-exon-sc0003882-1575043694:8210..8857TCONS_00043050-exon-sc0003882-1575043694:8210..8857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003882supercontigsc0003882:8210..8857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242445	0.472844	0.640519	0.895212	2.28865	3.53093	1.87021	1.26451	0.272405	0.674834	0.982516	0.269111	0.107495	0	0.0458894	0.246232	0.303337	0.435275	0	0.0898966	0.312546	0.228673	0.185322	0.168484	0.0867674	0.464627	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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