TCONS_00043049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043049
Unique NameTCONS_00043049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043049 ID=TCONS_00043049|Name=TCONS_00043049|organism=Clytia hemisphaerica|type=transcript|length=281bp
GTTCAAACTATGCAACCTCTGCTGACAGTCATGTTAACTTCATAAAAAAA
GATTAAATTTCATGTCCACACTCTACCGTAAGTTTGTCTAATGTTGACAT
CCCTCATCTAATTCGCAATCTGTCATTTTGTCTCATTTTAAGTTTTCAAG
TTTAAATTGATTGTTTTGGGATCTTGAACTtaattcaggtaactctcatc
cttgttgttgcaaatacatcctgtagatgactgatgttgttttttctgaa
agcttgatttcctagtgtgactaactgcctg
Run BLAST on NCBI

transcript from alignment at sc0003882:6551..6831

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043049 ID=TCONS_00043049|Name=TCONS_00043049|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at sc0003882:6551..6831 (Clytia hemisphaerica)
caggcagttagtcacactaggaaatcaagctttcagaaaaaacaacatca
gtcatctacaggatgtatttgcaacaacaaggatgagagttacctgaatt
aAGTTCAAGATCCCAAAACAATCAATTTAAACTTGAAAACTTAAAATGAG
ACAAAATGACAGATTGCGAATTAGATGAGGGATGTCAACATTAGACAAAC
TTACGGTAGAGTGTGGACATGAAATTTAATCTTTTTTTATGAAGTTAACA
TGACTGTCAGCAGAGGTTGCATAGTTTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026791XLOC_026791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043049-exon-sc0003882-1491911889:6551..6831TCONS_00043049-exon-sc0003882-1491911889:6551..6831Clytia hemisphaericaexon
TCONS_00043049-exon-sc0003882-1510915933:6551..6831TCONS_00043049-exon-sc0003882-1510915933:6551..6831Clytia hemisphaericaexon
TCONS_00043049-exon-sc0003882-1575043694:6551..6831TCONS_00043049-exon-sc0003882-1575043694:6551..6831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003882supercontigsc0003882:6551..6831 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1051	13.0683	20.067	17.8395	17.266	10.143	12.435	6.44459	9.19099	9.78895	6.68946	8.50491	6.8837	7.89526	6.24351	10.6345	12.5603	10.8944	6.97398	7.44085	6.05603	10.0846	2.47839	2.63356	12.3684	13.0457	11.5674	6.71831	5.79587	6.82775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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