TCONS_00043048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043048
Unique NameTCONS_00043048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1889

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043048 ID=TCONS_00043048|Name=TCONS_00043048|organism=Clytia hemisphaerica|type=transcript|length=1889bp
GCGGGttagaaattcccgtgagcaatctcgttatttatcacaATGTGCGA
AAAGCTTAAGTAGCGATAAACCACGAGGAGCGAATTTTATGTACTACAGA
CTACAGACAGCTAGACGTGCTGTGTTGGGTAAAGtctaatttgatttgat
tgctTGTGTTTTTTAATGTCTTGGAAAGAAGACTTAGCTCTAAAAGAGCA
ACTTGAAATTTATGTAAAACAAggtttcaagaaaattgaaattttagacT
TCGTCATCAGGGACTATGGATATCATTTTAAATCTGGCTCTTGTAGCCCC
TCTACCTTGTCAAGGATGTTGAGACATTTTGAGATAACATATAGATTACT
CTGTTCCTGCCGAAGCTGTTGAAGAAGTAGTACGACAGGAAATTAAAGGA
GCAGGGAAAGATCTGGGATATCGAGCAATGACATTGAAAGTCAGGCAAAA
ACATGAACTGAAAGTTCCAAGAAACGTAGTGTATGCATGTATGGTCAATG
TAGATTACGAAAATGTGAAAAAGAGAGCACtgaatcaaaatggtagaaaa
aAGAGAGAAGGGCGATACACTACTGCGGGTGTTGATTCTTTGCTTTCGAT
TGATGGGCACGACAAGTTGATGGGTTACCAAAACTCTACGTTTCCCATTG
CAGTGTATGGAATGCTAGACCAGGCTAGTAGGAAAATACTAATCCTCAGA
TGTTGGACGACCAATAGCAATCCTGACGTTGTCGGCCATTGGTACCTGGA
ATTGTTAANGACGTTTCCCATTGCAGTGTATAGAATGCTAGACCAGGCTA
GTAGGAAAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGAC
GTTGTCGGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATCTTGCC
TGGTAGTATGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAA
TTCATGGTTATCTAAGAGCTCAAGTTGGAGATCTCACTGATCCTGTTGAT
TCAATCATATATGGCACTTCAACCACTAACCAGATTGAGAGGTGGTGGCG
CGAACTTCATGAACGCTTGGAGAAAAACATCAAGAAGGACCTCAATGCTC
TTCTTGCTGAAAATTTGTATAACCCACATGACCAAATTGATAGAGATCTC
CTGGCATTCATCATGGTACCATGTGTTCAAAGAGAACTTGATGAATTTAA
GGATATAGTCTGGAATACACATAGGATAAGACGTCAAAAGCATACTTTGC
TACCAGATGGAATACCCAATCATATATATCAGTTTCCAGAAAAGTATGAT
TTACAACAGTGTGGTAAGACATATAAACTTAGTCTAGTTTTTTAAACTAT
TGAGCTATAGAATGATCGAGTGCAGAAGAAGGTTAACAATGGTTACAAAA
GTATAGGGAGATATGTCAGACATTGTATGTGGGGTCAGGGGTGGACCCAT
TCTGTACTTTAGAGGGCCTACTTCTCTCTTCTCTAATGCAATGAATTTTC
TTTAATCTTATATTTAATTTATTAGGATTCCAATTAACAGAGGAGCAGAT
CACTGAGGTGGAAGCAGAGGCAGAGCTAGGCAATGGTATTAGTGATTTTT
TAACTGAAGAAATGCGTGAAGCATGTGAGTCAGTTGTGCCATATCCTGGT
GAAGTTCCATTCAACCATTTTAGAACTGCTTACCTACATTTAAGATCTAC
CTTAAAAGATAGATTGAACAATGAAAATTAGTAAATGATTATACTGTATA
ATCTGTATCTATGATTTTAATATCTTTATTTGTCTCAAAATGTAAATAAT
TTAAACTAGCTGTTGTCTAAGAATTTTTTAGTTTGTTTTATCGCATAAAA
AATGAAAGAAAGTTGTTTGGTATACAACAATAAAATATA
Run BLAST on NCBI

transcript from alignment at sc0003882:5151..7992+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043048 ID=TCONS_00043048|Name=TCONS_00043048|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at sc0003882:5151..7992+ (Clytia hemisphaerica)
GCGGGttagaaattcccgtgagcaatctcgttatttatcacaATGTGCGA
AAAGCTTAAGTAGCGATAAACCACGAGGAGCGAATTTTATGTACTACAGA
CTACAGACAGCTAGACGTGCTGTGTTGGGTAAAGtctaatttgatttgat
tgctTGTGTTTTTTAATGTCTTGGAAAGAAGACTTAGCTCTAAAAGAGCA
ACTTGAAATTTATGTAAAACAAggtttcaagaaaattgaaattttagacT
TCGTCATCAGGGACTATGGATATCATTTTAAATCTGGCTCTTGTAGCCCC
TCTACCTTGTCAAGGATGTTGAGACATTTTGAGATAACATATAGATTACT
CTGTTCCTGCCGAAGCTGTTGAAGAAGTAGTACGACAGGAAATTAAAGGA
GCAGGGAAAGATCTGGGATATCGAGCAATGACATTGAAAGTCAGGCAAAA
ACATGAACTGAAAGTTCCAAGAAACGTAGTGTATGCATGTATGGTCAATG
TAGATTACGAAAATGTGAAAAAGAGAGCACtgaatcaaaatggtagaaaa
aAGAGAGAAGGGCGATACACTACTGCGGGTGTTGATTCTTTGCTTTCGAT
TGATGGGCACGACAAGTTGATGGGTTACCAAAACTCTACGTTTCCCATTG
CAGTGTATGGAATGCTAGACCAGGCTAGTAGGAAAATACTAATCCTCAGA
TGTTGGACGACCAATAGCAATCCTGACGTTGTCGGCCATTGGTACCTGGA
ATTGTTAANGACGTTTCCCATTGCAGTGTATAGAATGCTAGACCAGGCTA
GTAGGAAAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGAC
GTTGTCGGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATCTTGCC
TGGTAGTATGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAA
TTCATGGTTATCTAAGAGCTCAAGTTGGAGATCTCACTGATCCTGTTGAT
TCAATCATATATGGCACTTCAACCACTAACCAGGTATTAGGGCTTGCCTG
TgcctgtacacgtttttttataggcTTCAAAGAAtaggtcaaaaaattaa
gaacatgctaagaacatttagAGGCTTCAAGAGTAAGAAAGAAGaacatt
tgtttgtttttgattatgtacacatgtttcaataaaaagtaaaaaggcTC
TTAAGCCAGCTGACTTAATAAGTGAGGAAAATCACATTTCACGCCAATTA
AGTCCCCCATGAGCAAACTTTTGAGACTTAAATTAATAGACTTAATTact
gtaagaacattttaaggcttgaaatcaaaaaagctaagaacattgaaGGC
TTCTTcgattttgaatgttctttttataaaaaaatgtgtatgtgGTATAt
caggcagttagtcacactaggaaatcaagctttcagaaaaaacaacatca
gtcatctacaggatgtatttgcaacaacaaggatgagagttacctgaatt
aAGTTCAAGATCCCAAAACAATCAATTTAAACTTGAAAACTTAAAATGAG
ACAAAATGACAGATTGCGAATTAGATGAGGGATGTCAACATTAGACAAAC
TTACGGTAGAGTGTGGACATGAAATTTAATCTTTTTTTATGAAGTTAACA
TGACTGTCAGCAGAGGTTGCATAGTTTGAACCCATAGTTTTTTCTTAAGG
GGTGGGGTTGACACCTTCGGGGAAACCCAAGAAGGGGGGGTCGCAAATTT
TCCAGAGGAAGGGGGAATCAGTCAAAAAAGGGGGTAACCTTATCAAAAAA
CTTTTCTTTTTTTTAAGTTGAACTTAGGATAAAAAAGAATTTTGACACTA
TTAATATGTTTCCAGATTGAGAGGTGGTGGCGCGAACTTCATGAACGCTT
GGAGAAAAACATCAAGAAGGACCTCAATGCTCTTCTTGCTGAAAATTTGT
ATAACCCACATGACCAAATTGATAGGTAATGTTATGTTTGAAACTTAAGT
TTAACAAATTAAGTCAACGTGCATGAGACTGAAATATTAGATCATTTTTC
TGTTATTGTTATTGCTTGTTCATATGTTTTTAATTTCTTTTTCAAGAGAT
CTCCTGGCATTCATCATGGTACCATGTGTTCAAAGAGAACTTGATGAATT
TAAGGATATAGTCTGGAATACACATAGGATAAGACGTCAAAAGCATACTT
TGCTACCAGATGGAATACCCAATCATATATATCAGTTTCCAGAAAAGTAT
GATTTACAACAGTGTGGTAAGACATATAAACTTAGTCTAGTTTTTTAAAC
TATTGAGCTATAGAATGATCGAGTGCAGAAGAAGGTTAACAATGGTTACA
AAAGTATAGGGAGATATGTCAGACATTGTATGTGGGGTCAGGGGTGGACC
CATTCTGTACTTTAGAGGGCCTACTTCTCTCTTCTCTAATGCAATGAATT
TTCTTTAATCTTATATTTAATTTATTAGGATTCCAATTAACAGAGGAGCA
GATCACTGAGGTGGAAGCAGAGGCAGAGCTAGGCAATGGTATTAGTGATT
TTTTAACTGAAGAAATGCGTGAAGCATGTGAGTCAGTTGTGCCATATCCT
GGTGAAGTTCCATTCAACCATTTTAGAACTGCTTACCTACATTTAAGATC
TACCTTAAAAGATAGATTGAACAATGAAAATTAGTAAATGATTATACTGT
ATAATCTGTATCTATGATTTTAATATCTTTATTTGTCTCAAAATGTAAAT
AATTTAAACTAGCTGTTGTCTAAGAATTTTTTAGTTTGTTTTATCGCATA
AAAAATGAAAGAAAGTTGTTTGGTATACAACAATAAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026790XLOC_026790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043048-exon-sc0003882-1491911889:5151..6183TCONS_00043048-exon-sc0003882-1491911889:5151..6183Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1510915933:5151..6183TCONS_00043048-exon-sc0003882-1510915933:5151..6183Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1575043694:5151..6183TCONS_00043048-exon-sc0003882-1575043694:5151..6183Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1491911889:7016..7125TCONS_00043048-exon-sc0003882-1491911889:7016..7125Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1510915933:7016..7125TCONS_00043048-exon-sc0003882-1510915933:7016..7125Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1575043694:7016..7125TCONS_00043048-exon-sc0003882-1575043694:7016..7125Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1491911889:7247..7992TCONS_00043048-exon-sc0003882-1491911889:7247..7992Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1510915933:7247..7992TCONS_00043048-exon-sc0003882-1510915933:7247..7992Clytia hemisphaericaexon
TCONS_00043048-exon-sc0003882-1575043694:7247..7992TCONS_00043048-exon-sc0003882-1575043694:7247..7992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003882supercontigsc0003882:5151..7992 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.563414	0.987564	0.816632	0.314906	1.45369	0.82776	1.25352	1.35098	0.954861	0.607108	0.953509	0.891608	0.864318	0.724758	0.973063	0.951467	1.63561	2.03418	0.268837	0.315737	1.45237	1.7379	0.475761	1.27921	1.53616	1.29189	0.465149	0.0907647	0.309339	0.328764
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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