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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043047 ID=TCONS_00043047|Name=TCONS_00043047|organism=Clytia hemisphaerica|type=transcript|length=1677bp
GCGGGttagaaattcccgtgagcaatctcgttatttatcacaATGTGCGA
AAAGCTTAAGTAGCGATAAACCACGAGGAGCGAATTTTATGTACTACAGA
CTACAGACAGCTAGACGTGCTGTGTTGGGTAAAGtctaatttgatttgat
tgctTGTGTTTTTTAATGTCTTGGAAAGAAGACTTAGCTCTAAAAGAGCA
ACTTGAAATTTATGTAAAACAAggtttcaagaaaattgaaattttagacT
TCGTCATCAGGGACTATGGATATCATTTTAAATCTGGCTCTTGTAGCCCC
TCTACCTTGTCAAGGATGTTGAGACATTTTGAGATAACATATAGATTACT
CTGTTCCTGCCGAAGCTGTTGAAGAAGTAGTACGACAGGAAATTAAAGGA
GCAGGGAAAGATCTGGGATATCGAGCAATGACATTGAAAGTCAGGCAAAA
ACATGAACTGAAAGTTCCAAGAAACGTAGTGTATGCATGTATGGTCAATG
TAGATTACGAAAATGTGAAAAAGAGAGCACtgaatcaaaatggtagaaaa
aAGAGAGAAGGGCGATACACTACTGCGGGTGTTGATTCTTTGCTTTCGAT
TGATGGGCACGACAAGTTGATGGGTTACCAAAACTCTACGTTTCCCATTG
CAGTGTATGGAATGCTAGACCAGGCTAGTAGGAAAATACTAATCCTCAGA
TGTTGGACGACCAATAGCAATCCTGACGTTGTCGGCCATTGGTACCTGGA
ATTGTTAANGACGTTTCCCATTGCAGTGTATAGAATGCTAGACCAGGCTA
GTAGGAAAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGAC
GTTGTCGGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATCTTGCC
TGGTAGTATGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAA
TTCATGGTTATCTAAGAGCTCAAGTTGGAGATCTCACTGATCCTGTTGAT
TCAATCATATATGGCACTTCAACCACTAACCAGATTGAGAGGTGGTGGCG
CGAACTTCATGAACGCTTGGAGAAAAACATCAAGAAGGACCTCAATGCTC
TTCTTGCTGAAAATTTGTATAACCCACATGACCAAATTGATAGAGATCTC
CTGGCATTCATCATGGTACCATGTGTTCAAAGAGAACTTGATGAATTTAA
GGATATAGTCTGGAATACACATAGGATAAGACGTCAAAAGCATACTTTGC
TACCAGATGGAATACCCAATCATATATATCAGTTTCCAGAAAAGTATGAT
TTACAACAGTGTGGATTCCAATTAACAGAGGAGCAGATCACTGAGGTGGA
AGCAGAGGCAGAGCTAGGCAATGGTATTAGTGATTTTTTAACTGAAGAAA
TGCGTGAAGCATGTGAGTCAGTTGTGCCATATCCTGGTGAAGTTCCATTC
AACCATTTTAGAACTGCTTACCTACATTTAAGATCTACCTTAAAAGATAG
ATTGAACAATGAAAATTAGTAAATGATTATACTGTATAATCTGTATCTAT
GATTTTAATATCTTTATTTGTCTCAAAATGTAAATAATTTAAACTAGCTG
TTGTCTAAGAATTTTTTAGTTTGTTTTATCGCATAAAAAATGAAAGAAAG
TTGTTTGGTATACAACAATAAAATATA Run BLAST on NCBI protein sequence of TCONS_00043047-protein >TCONS_00043047-protein ID=TCONS_00043047-protein|Name=TCONS_00043047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MTLKVRQKHELKVPRNVVYACMVNVDYENVKKRALNQNGRKKREGRYTTA
GVDSLLSIDGHDKLMGYQNSTFPIAVYGMLDQASRKILILRCWTTNSNPD
VVGHWYLELLXTFPIAVYRMLDQASRKILILRCWTTNSNPDVVGHWYLEL
LKESKILPGSMRCDRGTETGKLVTIHGYLRAQVGDLTDPVDSIIYGTSTT
NQIERWWRELHERLEKNIKKDLNALLAENLYNPHDQIDRDLLAFIMVPCV
QRELDEFKDIVWNTHRIRRQKHTLLPDGIPNHIYQFPEKYDLQQCGFQLT
EEQITEVEAEAELGNGISDFLTEEMREACESVVPYPGEVPFNHFRTAYLH
LRSTLKDRLNNEN Run BLAST on NCBI transcript from alignment at sc0003882:5151..7992+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043047 ID=TCONS_00043047|Name=TCONS_00043047|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at sc0003882:5151..7992+ (Clytia hemisphaerica)
GCGGGttagaaattcccgtgagcaatctcgttatttatcacaATGTGCGA
AAAGCTTAAGTAGCGATAAACCACGAGGAGCGAATTTTATGTACTACAGA
CTACAGACAGCTAGACGTGCTGTGTTGGGTAAAGtctaatttgatttgat
tgctTGTGTTTTTTAATGTCTTGGAAAGAAGACTTAGCTCTAAAAGAGCA
ACTTGAAATTTATGTAAAACAAggtttcaagaaaattgaaattttagacT
TCGTCATCAGGGACTATGGATATCATTTTAAATCTGGCTCTTGTAGCCCC
TCTACCTTGTCAAGGATGTTGAGACATTTTGAGATAACATATAGATTACT
CTGTTCCTGCCGAAGCTGTTGAAGAAGTAGTACGACAGGAAATTAAAGGA
GCAGGGAAAGATCTGGGATATCGAGCAATGACATTGAAAGTCAGGCAAAA
ACATGAACTGAAAGTTCCAAGAAACGTAGTGTATGCATGTATGGTCAATG
TAGATTACGAAAATGTGAAAAAGAGAGCACtgaatcaaaatggtagaaaa
aAGAGAGAAGGGCGATACACTACTGCGGGTGTTGATTCTTTGCTTTCGAT
TGATGGGCACGACAAGTTGATGGGTTACCAAAACTCTACGTTTCCCATTG
CAGTGTATGGAATGCTAGACCAGGCTAGTAGGAAAATACTAATCCTCAGA
TGTTGGACGACCAATAGCAATCCTGACGTTGTCGGCCATTGGTACCTGGA
ATTGTTAANGACGTTTCCCATTGCAGTGTATAGAATGCTAGACCAGGCTA
GTAGGAAAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGAC
GTTGTCGGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATCTTGCC
TGGTAGTATGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAA
TTCATGGTTATCTAAGAGCTCAAGTTGGAGATCTCACTGATCCTGTTGAT
TCAATCATATATGGCACTTCAACCACTAACCAGGTATTAGGGCTTGCCTG
TgcctgtacacgtttttttataggcTTCAAAGAAtaggtcaaaaaattaa
gaacatgctaagaacatttagAGGCTTCAAGAGTAAGAAAGAAGaacatt
tgtttgtttttgattatgtacacatgtttcaataaaaagtaaaaaggcTC
TTAAGCCAGCTGACTTAATAAGTGAGGAAAATCACATTTCACGCCAATTA
AGTCCCCCATGAGCAAACTTTTGAGACTTAAATTAATAGACTTAATTact
gtaagaacattttaaggcttgaaatcaaaaaagctaagaacattgaaGGC
TTCTTcgattttgaatgttctttttataaaaaaatgtgtatgtgGTATAt
caggcagttagtcacactaggaaatcaagctttcagaaaaaacaacatca
gtcatctacaggatgtatttgcaacaacaaggatgagagttacctgaatt
aAGTTCAAGATCCCAAAACAATCAATTTAAACTTGAAAACTTAAAATGAG
ACAAAATGACAGATTGCGAATTAGATGAGGGATGTCAACATTAGACAAAC
TTACGGTAGAGTGTGGACATGAAATTTAATCTTTTTTTATGAAGTTAACA
TGACTGTCAGCAGAGGTTGCATAGTTTGAACCCATAGTTTTTTCTTAAGG
GGTGGGGTTGACACCTTCGGGGAAACCCAAGAAGGGGGGGTCGCAAATTT
TCCAGAGGAAGGGGGAATCAGTCAAAAAAGGGGGTAACCTTATCAAAAAA
CTTTTCTTTTTTTTAAGTTGAACTTAGGATAAAAAAGAATTTTGACACTA
TTAATATGTTTCCAGATTGAGAGGTGGTGGCGCGAACTTCATGAACGCTT
GGAGAAAAACATCAAGAAGGACCTCAATGCTCTTCTTGCTGAAAATTTGT
ATAACCCACATGACCAAATTGATAGGTAATGTTATGTTTGAAACTTAAGT
TTAACAAATTAAGTCAACGTGCATGAGACTGAAATATTAGATCATTTTTC
TGTTATTGTTATTGCTTGTTCATATGTTTTTAATTTCTTTTTCAAGAGAT
CTCCTGGCATTCATCATGGTACCATGTGTTCAAAGAGAACTTGATGAATT
TAAGGATATAGTCTGGAATACACATAGGATAAGACGTCAAAAGCATACTT
TGCTACCAGATGGAATACCCAATCATATATATCAGTTTCCAGAAAAGTAT
GATTTACAACAGTGTGGTAAGACATATAAACTTAGTCTAGTTTTTTAAAC
TATTGAGCTATAGAATGATCGAGTGCAGAAGAAGGTTAACAATGGTTACA
AAAGTATAGGGAGATATGTCAGACATTGTATGTGGGGTCAGGGGTGGACC
CATTCTGTACTTTAGAGGGCCTACTTCTCTCTTCTCTAATGCAATGAATT
TTCTTTAATCTTATATTTAATTTATTAGGATTCCAATTAACAGAGGAGCA
GATCACTGAGGTGGAAGCAGAGGCAGAGCTAGGCAATGGTATTAGTGATT
TTTTAACTGAAGAAATGCGTGAAGCATGTGAGTCAGTTGTGCCATATCCT
GGTGAAGTTCCATTCAACCATTTTAGAACTGCTTACCTACATTTAAGATC
TACCTTAAAAGATAGATTGAACAATGAAAATTAGTAAATGATTATACTGT
ATAATCTGTATCTATGATTTTAATATCTTTATTTGTCTCAAAATGTAAAT
AATTTAAACTAGCTGTTGTCTAAGAATTTTTTAGTTTGTTTTATCGCATA
AAAAATGAAAGAAAGTTGTTTGGTATACAACAATAAAATATA Coding sequence (CDS) from alignment at sc0003882:5151..7992+ >TCONS_00043047 ID=TCONS_00043047|Name=TCONS_00043047|organism=Clytia hemisphaerica|type=CDS|length=4368bp|location=Sequence derived from alignment at sc0003882:5151..7992+ (Clytia hemisphaerica)
ATGACATTGAAAGTCAGGCAAAAACATGAACTGAAAGTTCCAAGAAACGT
AGTGTATGCATGTATGGTCAATGTAGATTACGAAAATGTGAAAAAGAGAG
CACtgaatcaaaatggtagaaaaaAGAGAGAAGGGCGATACACTACTGCG
GGTGTTGATTCTTTGCTTTCGATTGATGGGCACGACAAGTTGATGGGTTA
CCAAAACTCTACGTTTCCCATTGCAGTGTATGGAATGCTAGACCAGGCTA
GTAGGAAAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGAC
GTTGTCGGCCATTGGTACCTGGAATTGTTAANGACGTTTCCCATTGCAGT
GTATAGAATGCTAGACCAGGCTAGTAGGAAAATACTAATCCTCAGATGTT
GGACGACCAATAGCAATCCTGACGTTGTCGGCCATTGGTACCTGGAATTG
TTAAAGGAATCAAAAATCTTGCCTGGTAGTATGAGATGTGACCGTGGCAC
AGAAACTGGCAAATTGGTAACAATTCATGGTTATCTAAGAGCTCAAGTTG
GAGATCTCACTGATCCTGTTGATTCAATCATATATGGCACTTCAACCACT
AACCAGATTGAGAGGTGGTGGCGCGAACTTCATGAACGCTTGGAGAAAAA
CATCAAGAAGGACCTCAATGCTCTTCTTGCTGAAAATTTGTATAACCCAC
ATGACCAAATTGATAGAGATCTCCTGGCATTCATCATGGTACCATGTGTT
CAAAGAGAACTTGATGAATTTAAGGATATAGTCTGGAATACACATAGGAT
AAGACGTCAAAAGCATACTTTGCTACCAGATGGAATACCCAATCATATAT
ATCAGTTTCCAGAAAAGTATGATTTACAACAGTGTGGATTCCAATTAACA
GAGGAGCAGATCACTGAGGTGGAAGCAGAGGCAGAGCTAGGCAATGGTAT
TAGTGATTTTTTAACTGAAGAAATGCGTGAAGCATGTGAGTCAGTTGTGC
CATATCCTGGTGAAGTTCCATTCAACCATTTTAGAACTGCTTACCTACAT
TTAAGATCTACCTTAAAAGATAGATTGAACAATGAAAATTAGATGACATT
GAAAGTCAGGCAAAAACATGAACTGAAAGTTCCAAGAAACGTAGTGTATG
CATGTATGGTCAATGTAGATTACGAAAATGTGAAAAAGAGAGCACtgaat
caaaatggtagaaaaaAGAGAGAAGGGCGATACACTACTGCGGGTGTTGA
TTCTTTGCTTTCGATTGATGGGCACGACAAGTTGATGGGTTACCAAAACT
CTACGTTTCCCATTGCAGTGTATGGAATGCTAGACCAGGCTAGTAGGAAA
ATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGACGTTGTCGG
CCATTGGTACCTGGAATTGTTAANGACGTTTCCCATTGCAGTGTATAGAA
TGCTAGACCAGGCTAGTAGGAAAATACTAATCCTCAGATGTTGGACGACC
AATAGCAATCCTGACGTTGTCGGCCATTGGTACCTGGAATTGTTAAAGGA
ATCAAAAATCTTGCCTGGTAGTATGAGATGTGACCGTGGCACAGAAACTG
GCAAATTGGTAACAATTCATGGTTATCTAAGAGCTCAAGTTGGAGATCTC
ACTGATCCTGTTGATTCAATCATATATGGCACTTCAACCACTAACCAGAT
TGAGAGGTGGTGGCGCGAACTTCATGAACGCTTGGAGAAAAACATCAAGA
AGGACCTCAATGCTCTTCTTGCTGAAAATTTGTATAACCCACATGACCAA
ATTGATAGAGATCTCCTGGCATTCATCATGGTACCATGTGTTCAAAGAGA
ACTTGATGAATTTAAGGATATAGTCTGGAATACACATAGGATAAGACGTC
AAAAGCATACTTTGCTACCAGATGGAATACCCAATCATATATATCAGTTT
CCAGAAAAGTATGATTTACAACAGTGTGGATTCCAATTAACAGAGGAGCA
GATCACTGAGGTGGAAGCAGAGGCAGAGCTAGGCAATGGTATTAGTGATT
TTTTAACTGAAGAAATGCGTGAAGCATGTGAGTCAGTTGTGCCATATCCT
GGTGAAGTTCCATTCAACCATTTTAGAACTGCTTACCTACATTTAAGATC
TACCTTAAAAGATAGATTGAACAATGAAAATTAGATGACATTGAAAGTCA
GGCAAAAACATGAACTGAAAGTTCCAAGAAACGTAGTGTATGCATGTATG
GTCAATGTAGATTACGAAAATGTGAAAAAGAGAGCACtgaatcaaaatgg
tagaaaaaAGAGAGAAGGGCGATACACTACTGCGGGTGTTGATTCTTTGC
TTTCGATTGATGGGCACGACAAGTTGATGGGTTACCAAAACTCTACGTTT
CCCATTGCAGTGTATGGAATGCTAGACCAGGCTAGTAGGAAAATACTAAT
CCTCAGATGTTGGACGACCAATAGCAATCCTGACGTTGTCGGCCATTGGT
ACCTGGAATTGTTAANGACGTTTCCCATTGCAGTGTATAGAATGCTAGAC
CAGGCTAGTAGGAAAATACTAATCCTCAGATGTTGGACGACCAATAGCAA
TCCTGACGTTGTCGGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAA
TCTTGCCTGGTAGTATGAGATGTGACCGTGGCACAGAAACTGGCAAATTG
GTAACAATTCATGGTTATCTAAGAGCTCAAGTTGGAGATCTCACTGATCC
TGTTGATTCAATCATATATGGCACTTCAACCACTAACCAGATTGAGAGGT
GGTGGCGCGAACTTCATGAACGCTTGGAGAAAAACATCAAGAAGGACCTC
AATGCTCTTCTTGCTGAAAATTTGTATAACCCACATGACCAAATTGATAG
AGATCTCCTGGCATTCATCATGGTACCATGTGTTCAAAGAGAACTTGATG
AATTTAAGGATATAGTCTGGAATACACATAGGATAAGACGTCAAAAGCAT
ACTTTGCTACCAGATGGAATACCCAATCATATATATCAGTTTCCAGAAAA
GTATGATTTACAACAGTGTGGATTCCAATTAACAGAGGAGCAGATCACTG
AGGTGGAAGCAGAGGCAGAGCTAGGCAATGGTATTAGTGATTTTTTAACT
GAAGAAATGCGTGAAGCATGTGAGTCAGTTGTGCCATATCCTGGTGAAGT
TCCATTCAACCATTTTAGAACTGCTTACCTACATTTAAGATCTACCTTAA
AAGATAGATTGAACAATGAAAATTAGATGACATTGAAAGTCAGGCAAAAA
CATGAACTGAAAGTTCCAAGAAACGTAGTGTATGCATGTATGGTCAATGT
AGATTACGAAAATGTGAAAAAGAGAGCACtgaatcaaaatggtagaaaaa
AGAGAGAAGGGCGATACACTACTGCGGGTGTTGATTCTTTGCTTTCGATT
GATGGGCACGACAAGTTGATGGGTTACCAAAACTCTACGTTTCCCATTGC
AGTGTATGGAATGCTAGACCAGGCTAGTAGGAAAATACTAATCCTCAGAT
GTTGGACGACCAATAGCAATCCTGACGTTGTCGGCCATTGGTACCTGGAA
TTGTTAANGACGTTTCCCATTGCAGTGTATAGAATGCTAGACCAGGCTAG
TAGGAAAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGACG
TTGTCGGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATCTTGCCT
GGTAGTATGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAAT
TCATGGTTATCTAAGAGCTCAAGTTGGAGATCTCACTGATCCTGTTGATT
CAATCATATATGGCACTTCAACCACTAACCAGATTGAGAGGTGGTGGCGC
GAACTTCATGAACGCTTGGAGAAAAACATCAAGAAGGACCTCAATGCTCT
TCTTGCTGAAAATTTGTATAACCCACATGACCAAATTGATAGAGATCTCC
TGGCATTCATCATGGTACCATGTGTTCAAAGAGAACTTGATGAATTTAAG
GATATAGTCTGGAATACACATAGGATAAGACGTCAAAAGCATACTTTGCT
ACCAGATGGAATACCCAATCATATATATCAGTTTCCAGAAAAGTATGATT
TACAACAGTGTGGATTCCAATTAACAGAGGAGCAGATCACTGAGGTGGAA
GCAGAGGCAGAGCTAGGCAATGGTATTAGTGATTTTTTAACTGAAGAAAT
GCGTGAAGCATGTGAGTCAGTTGTGCCATATCCTGGTGAAGTTCCATTCA
ACCATTTTAGAACTGCTTACCTACATTTAAGATCTACCTTAAAAGATAGA
TTGAACAATGAAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043047-exon-sc0003882-1491911889:5151..6183 | TCONS_00043047-exon-sc0003882-1491911889:5151..6183 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1510915933:5151..6183 | TCONS_00043047-exon-sc0003882-1510915933:5151..6183 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1575043694:5151..6183 | TCONS_00043047-exon-sc0003882-1575043694:5151..6183 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1491911889:7016..7125 | TCONS_00043047-exon-sc0003882-1491911889:7016..7125 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1510915933:7016..7125 | TCONS_00043047-exon-sc0003882-1510915933:7016..7125 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1575043694:7016..7125 | TCONS_00043047-exon-sc0003882-1575043694:7016..7125 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1491911889:7247..7416 | TCONS_00043047-exon-sc0003882-1491911889:7247..7416 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1510915933:7247..7416 | TCONS_00043047-exon-sc0003882-1510915933:7247..7416 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1575043694:7247..7416 | TCONS_00043047-exon-sc0003882-1575043694:7247..7416 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1491911889:7629..7992 | TCONS_00043047-exon-sc0003882-1491911889:7629..7992 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1510915933:7629..7992 | TCONS_00043047-exon-sc0003882-1510915933:7629..7992 | Clytia hemisphaerica | exon |
| TCONS_00043047-exon-sc0003882-1575043694:7629..7992 | TCONS_00043047-exon-sc0003882-1575043694:7629..7992 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003882 | supercontig | sc0003882:5151..7992 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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