TCONS_00043045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043045
Unique NameTCONS_00043045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043045 ID=TCONS_00043045|Name=TCONS_00043045|organism=Clytia hemisphaerica|type=transcript|length=499bp
GGAAAATGTAAGTTGGTGATAACAAAGGAAaagtttgaaatcaaaacata
acaaGTTCAacttttcatttaaatttttaactttcaaTCTCTAGTAATCT
CCTAAGAATACCTTCTTTGtagttttttgaaagcttttgagaGACTTTGC
CTGCCTTTGTtcaattaactttttttaaagtcaaaattacaCTATTAGCT
TAGAACCTTATGGTTGGAGTGTCAGATGTGATGTCTAATCTCTGCTCAAA
AAGTTTTCACTGCACTTATACAAACGACTGATTGTATGTAAGCAATTTTT
GTTGCTGCTAGTTTTATTGCGTCCTCCCTTTTTGCTGGGGGGAGGGAGGA
CtagagatttttaaaattttccaaaagagGGGGGAGCAACaaaactttga
ttttctttggggTCTGAGACTAAAGGGATCACCTGCTTTTCTACAtgctg
ataaataacgagattgctcacgggaatttctaaCCCGCGCAAGCAAACC
Run BLAST on NCBI

transcript from alignment at sc0003881:2274..2772

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043045 ID=TCONS_00043045|Name=TCONS_00043045|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0003881:2274..2772 (Clytia hemisphaerica)
GGTTTGCTTGCGCGGGttagaaattcccgtgagcaatctcgttatttatc
agcaTGTAGAAAAGCAGGTGATCCCTTTAGTCTCAGAccccaaagaaaat
caaagttttGTTGCTCCCCCctcttttggaaaattttaaaaatctctaGT
CCTCCCTCCCCCCAGCAAAAAGGGAGGACGCAATAAAACTAGCAGCAACA
AAAATTGCTTACATACAATCAGTCGTTTGTATAAGTGCAGTGAAAACTTT
TTGAGCAGAGATTAGACATCACATCTGACACTCCAACCATAAGGTTCTAA
GCTAATAGtgtaattttgactttaaaaaaagttaattgaACAAAGGCAGG
CAAAGTCtctcaaaagctttcaaaaaactaCAAAGAAGGTATTCTTAGGA
GATTACTAGAGAttgaaagttaaaaatttaaatgaaaagtTGAACttgtt
atgttttgatttcaaacttTTCCTTTGTTATCACCAACTTACATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026789XLOC_026789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043045-exon-sc0003881-1491911889:2274..2772TCONS_00043045-exon-sc0003881-1491911889:2274..2772Clytia hemisphaericaexon
TCONS_00043045-exon-sc0003881-1510915933:2274..2772TCONS_00043045-exon-sc0003881-1510915933:2274..2772Clytia hemisphaericaexon
TCONS_00043045-exon-sc0003881-1575043694:2274..2772TCONS_00043045-exon-sc0003881-1575043694:2274..2772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003881supercontigsc0003881:2274..2772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57846	1.40652	2.34241	2.3701	0.164978	0.651841	0.629134	0.883482	0.206182	0.14598	0.904209	0.570331	0.32545	0.380248	0.572622	0.467588	0.642866	0.261159	0.847704	0.408254	0.118282	0.519246	0.420808	0.5101	0.919435	0.351675	0.216248	0	0	0.138343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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