TCONS_00043044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043044
Unique NameTCONS_00043044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043044 ID=TCONS_00043044|Name=TCONS_00043044|organism=Clytia hemisphaerica|type=transcript|length=838bp
TGTAAACCCTGCTAGTGCCTTTAAAATAGAATTTCCATCTGGGGGGTTAG
GACACTCTCCAATCTCCTTaaattctctaaagaatgaagAGAGGAGCTTT
TTCTAGTGTAACAGTACCCATATACGGCAGACAGAATTCAAAGAGCGTAC
ACGCGCGGGCGATTAAACACGATCGCGCGGCatgcgggtcaaaaaattcc
cgtgagcaatcttgttatttatcaaaaagtgctTTTCTCTTAGGGGGGGG
GCTGAGATACAAGACCAGACCCAATTAATCAAACTTGCCAAACTAATTAA
ACAATAGAACTAATTGAACTCAACATTATCATCGATCACGAGTAAAGTTT
TGAGTAGATTATTAATCAAACCTAATcgagcaaaatttttgaagcaatag
gaGTTTGATTAGcttggtcagtaaaaagttttaattaGTTAAGATTATTA
TTAGATCATCATATATTTTATCACTTGCAAAAACCCCTATTATGGCAGAT
GATTGCCATTCTGACAGTTCCTGGACTTAAGTTtaattgtacccggatat
ttgttaATTTGGAATAAAGCTTGAAGCtgcccctctgttgcgatttccCC
TGTAACCGCATGGCAGAATAACAAAGCCTGGCGGTTTTGTTTGCCTCNAA
ATAagtccttatgaaattaatatactcttttagtcttacatcagttgaaa
ctattttgaatcgcattttaacaaggattttcgaaaaaagtttttcaaaa
tcaaccaaactgtctctttctgttcttagaAACAAAGCAAGTTATTTCTG
TTGTAAAGAGTGCTCGATGTCAACAAAAAGTCGAAGAG
Run BLAST on NCBI

transcript from alignment at sc0003881:780..1617

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043044 ID=TCONS_00043044|Name=TCONS_00043044|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at sc0003881:780..1617 (Clytia hemisphaerica)
CTCTTCGACTTTTTGTTGACATCGAGCACTCTTTACAACAGAAATAACTT
GCTTTGTTtctaagaacagaaagagacagtttggttgattttgaaaaact
tttttcgaaaatccttgttaaaatgcgattcaaaatagtttcaactgatg
taagactaaaagagtatattaatttcataaggactTATTTNGAGGCAAAC
AAAACCGCCAGGCTTTGTTATTCTGCCATGCGGTTACAGGggaaatcgca
acagaggggcaGCTTCAAGCTTTATTCCAAATtaacaaatatccgggtac
aattaAACTTAAGTCCAGGAACTGTCAGAATGGCAATCATCTGCCATAAT
AGGGGTTTTTGCAAGTGATAAAATATATGATGATCTAATAATAATCTTAA
CtaattaaaactttttactgaccaagCTAATCAAACtcctattgcttcaa
aaattttgctcgATTAGGTTTGATTAATAATCTACTCAAAACTTTACTCG
TGATCGATGATAATGTTGAGTTCAATTAGTTCTATTGTTTAATTAGTTTG
GCAAGTTTGATTAATTGGGTCTGGTCTTGTATCTCAGCCCCCCCCCTAAG
AGAAAagcactttttgataaataacaagattgctcacgggaattttttga
cccgcatGCCGCGCGATCGTGTTTAATCGCCCGCGCGTGTACGCTCTTTG
AATTCTGTCTGCCGTATATGGGTACTGTTACACTAGAAAAAGCTCCTCTc
ttcattctttagagaatttAAGGAGATTGGAGAGTGTCCTAACCCCCCAG
ATGGAAATTCTATTTTAAAGGCACTAGCAGGGTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026788XLOC_026788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043044-exon-sc0003881-1491911889:780..1617TCONS_00043044-exon-sc0003881-1491911889:780..1617Clytia hemisphaericaexon
TCONS_00043044-exon-sc0003881-1510915933:780..1617TCONS_00043044-exon-sc0003881-1510915933:780..1617Clytia hemisphaericaexon
TCONS_00043044-exon-sc0003881-1575043694:780..1617TCONS_00043044-exon-sc0003881-1575043694:780..1617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003881supercontigsc0003881:780..1617 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02373	1.23656	2.09779	2.75839	0.532442	0.404291	0.641225	0.634236	0.609217	0.815375	0.971452	0.375644	0.487658	0.506437	0.756662	0.412448	0.635127	0.86798	0.419706	0.815643	0.76018	0.797993	0.324745	0.454766	0.484463	0.869426	0.696062	0.330158	0.595676	0.191349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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