TCONS_00043036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043036
Unique NameTCONS_00043036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043036 ID=TCONS_00043036|Name=TCONS_00043036|organism=Clytia hemisphaerica|type=transcript|length=534bp
ACTAGCTAGCGATTCGAAATTTATCTTAGACTTTTTGGCTATTTTATTTT
AGGAAGTGAAGTCtaggaaaacaaaaacaaatcgatttttcaaattttta
aaaaagccAAAGATGCACAGTAGTCTGGTAGTGTAGTCTGGCAGTGGCAG
TCTGGTATAGTGATTGGAAgagtttttttgatttgttcaCAGACACAGTA
TGCCAAAgctatttattttattttctgtcATTGGGCTATCAATGGCTATT
GATGACTACATTAGGTTTCATCCAAAACATGAAGCTTTCAGACCCTATGT
CCCCAAATGGCCAAGCAAATACATGATACAAGGAACATTGAATCTCCCTT
ATGCAGAGCTCTCTGAACCCTTTACTGCTTGGTATGATGCAGAAATGAAG
TCCAGCAGAATTGACTATTACGGAggtctctcaaaaacaattcaaagagg
tGACCTTGGTGAATATGGCCAACATTACATGANggacctaccccggtggg
gtggaggtcctataaattaacccgtgttcgttag
Run BLAST on NCBI

protein sequence of TCONS_00043036-protein

>TCONS_00043036-protein ID=TCONS_00043036-protein|Name=TCONS_00043036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MPKLFILFSVIGLSMAIDDYIRFHPKHEAFRPYVPKWPSKYMIQGTLNLP
YAELSEPFTAWYDAEMKSSRIDYYGGLSKTIQRGDLGEYGQHYMXDLPRW
GGGPIN
Run BLAST on NCBI

transcript from alignment at sc0003871:3956..8511-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043036 ID=TCONS_00043036|Name=TCONS_00043036|organism=Clytia hemisphaerica|type=transcript|length=4556bp|location=Sequence derived from alignment at sc0003871:3956..8511- (Clytia hemisphaerica)
ACTAGCTAGCGATTCGAAATTTATCTTAGACTTTTTGGCTATTTTATTTT
AGGAAGTGAAGTCTAGGAAAACAAAAACAAATCGATTTTTCAAATTTTTA
AAAAAGCCAAAGATGCACAGTAGTCTGGTAGTGTAGTCTGGCAGTGGCAG
TCTGGTATAGTGATTGGAAGAGTTTTTTTGATTTGTTCACAGACACAGTA
TGCCAAAGCTATTTATTTTATTTTCTGTCATTGGGCTATCAATGGCTATT
GATGACTACATTAGGTTTCATCCAAAACATGAAGCTTTCAGACCCTATGT
CCCCAAATGGCCAAGCAAATACATGATACAAGGAACATTGAATCTCCCTT
ATGCAGAGCTCTCTGAACCCTTTACTGCTTGGTATGATGCAGAAATGAAG
TCCAGCAGAATTGACTATTACGGAGGTAATTTTAAAATATTTGTAAAACC
TATATAACCTATTATATACCGTGAGCGTGAGTAGTGGTCCTAAATCTGAC
AGCCCTGCCTAATTCCGACCCCCCAAATGACTGTTAGGCCGATGAAATTT
ACATATGAGTTTACCGTCGTGAACTTACCCAAAAATAGATGCGGCATGAT
TTCATTATTCATTATTCATTATTTTCCCAACAGCACCTTATCCACCATTC
AGTATAGACCTAACTCTTCATACAAAAATTACGGGAAACACATATTTGGA
CTTTGTACCGTATGCTGCACTCAAGCACTTAAGCCAAAGTCCCGCAAAGG
CGGGACAAAAATCAGTTTTTTGAAGTTTGCAAAAAAACGCCACATAGAAC
ATCTTTCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAAAATACAACTTTTCTATTTTTCCTTTTATTTGCAAAA
GTTCTAGGAATGAAAATAAAGGGATAATGATAATTGAATACTATCCATTG
ATTATCCGCGGCACTATCGTAAAGCTAGAATCGCTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGAAAAATTTATGAATTTTGAAAATAATGAAATTTTCA
TGCGGGTGCTTTTTAGAGATGCGGGCGGCCGACGGTAAACTCATATATAA
ATTTCATCGGCCTTATGAAAAAAATTCTATGTTTACAAACATTCCCTCTC
CAAGTTGAACGATAAACTATTGCAAGAACTCTAGAAACAAAACCGTGAGA
TTGGGTAACTTGCATCAGTGCAGTGGAGGCTAATATGCATAGCCCTCAAA
TGAAAGACCTGACTGGTCATTAAAATACAACTACGCAGCTCCGCTCGAAG
CTCTACTCTACCATTTTTGTTTTGATTTAACTTTGTATTTTGATGACCAG
TCAGGTGTTTCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGT
TACCCGATCTCACGGTAGTGTGTTGAATCAGTTCTCCAAAGTAGTTCAGT
ACAGTTTTTTGTAACAGTGGAGTAAATTTTTTTTCAGAATATCCTTTTCG
AGCATGCCATGGGAACCTTTCCTAACTTTAAGACTGTTTTCTTTGACTAA
AAAGGATTTTAGAGACTTTTAAAGTCAGAACAGAAATGAAACAAGGTGGT
CACAATATTCCATTTTTAAACCACATACCATAACTTTGTGTAATCCGGAC
ATAACTTGTCAGTATAGCCCTAAAACTCTTCATAAGATTTGTATGGGAAA
CGCATATTTGGACTTTGTACCCAATGAGTACAAGCACTTATAAGCTTAAG
TCCCACAAAAGGCGGACAAAAATCAGTTCTTTGAAGTTTACAAAAAAACG
CCACATATATAGAAGATCTTTCAAATTCAGTATTTTTTTGCAATTAAATT
TCAGTGTTATAAAATTCCTTATCGAGACACATTCTCCTACGAAGAGGCTT
CAAAAAAATGACGTACTTTAAAAAGTTGTTACAAAGTATGTCATTTTATC
TTAACAATTTTGTAAACTATGTCACAACCATGGAGCGCTGACTTTTAGTT
TTATGATTTATTCTCACTCGTTTGGTTTCTGTAATAAAAACAAAGTCATT
ATTGTGAACTTGAACATGCTTAAAATCGAGGTACTTCCACGAACTGATGT
ATATTACTAGGCAACCCCTTAGTCTAATAAACAACATTTTTTCACAGGTC
TCTCAAAAACAATTCAAAGAGGTGACCTTGGTGAATATGGCCAACATTAC
ATGANGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCGTGTT
CGTTAG

Coding sequence (CDS) from alignment at sc0003871:3956..8511-

>TCONS_00043036 ID=TCONS_00043036|Name=TCONS_00043036|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0003871:3956..8511- (Clytia hemisphaerica)
GTCTCTCAAAAACAATTCAAAGAGGTGACCTTGGTGAATATGGCCAACAT
TACATGANGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAAATGCC
AAAGCTATTTATTTTATTTTCTGTCATTGGGCTATCAATGGCTATTGATG
ACTACATTAGGTTTCATCCAAAACATGAAGCTTTCAGACCCTATGTCCCC
AAATGGCCAAGCAAATACATGATACAAGGAACATTGAATCTCCCTTATGC
AGAGCTCTCTGAACCCTTTACTGCTTGGTATGATGCAGAAATGAAGTCCA
GCAGAATTGACTATTACGGAGGTCTCTCAAAAACAATTCAAAGAGGTGAC
CTTGGTGAATATGGCCAACATTACATGANGGACCTACCCCGGTGGGGTGG
AGGTCCTATAAATTAAATGCCAAAGCTATTTATTTTATTTTCTGTCATTG
GGCTATCAATGGCTATTGATGACTACATTAGGTTTCATCCAAAACATGAA
GCTTTCAGACCCTATGTCCCCAAATGGCCAAGCAAATACATGATACAAGG
AACATTGAATCTCCCTTATGCAGAGCTCTCTGAACCCTTTACTGCTTGGT
ATGATGCAGAAATGAAGTCCAGCAGAATTGACTATTACGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026780XLOC_026780Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043036-proteinTCONS_00043036-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043036-exon-sc0003871-1575043694:8087..8511TCONS_00043036-exon-sc0003871-1575043694:8087..8511Clytia hemisphaericaexon
TCONS_00043036-exon-sc0003871-1575043694:3956..4064TCONS_00043036-exon-sc0003871-1575043694:3956..4064Clytia hemisphaericaexon
TCONS_00043036-exon-sc0003871-1510915933:8087..8511TCONS_00043036-exon-sc0003871-1510915933:8087..8511Clytia hemisphaericaexon
TCONS_00043036-exon-sc0003871-1510915933:3956..4064TCONS_00043036-exon-sc0003871-1510915933:3956..4064Clytia hemisphaericaexon
TCONS_00043036-exon-sc0003871-1491911889:8087..8511TCONS_00043036-exon-sc0003871-1491911889:8087..8511Clytia hemisphaericaexon
TCONS_00043036-exon-sc0003871-1491911889:3956..4064TCONS_00043036-exon-sc0003871-1491911889:3956..4064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003871supercontigsc0003871:3956..8511 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.241	131.744	78.1445	76.2336	73.8106	68.4098	48.4519	60.5442	110.269	94.3168	116.304	109.668	100.899	111.113	146.555	153.47	85.2496	110.632	123.876	144.137	63.3072	63.1367	80.7152	102.115	112.913	115.485	48.3575	62.0194	112.006	107.613
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top