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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043029 ID=TCONS_00043029|Name=TCONS_00043029|organism=Clytia hemisphaerica|type=transcript|length=1272bp
ATCAACTCCACGCTCAACTGACACCATAGCCAAAAGAGAGAAATGCTTAC
AAAATGCTCAAACCGTCAATGCAGATTCCAAAATTGTGCTACTCAAGTTA
TTATGACTTCGTACAAAGGGTGACAAAATTAAAACTTCAACCTGGATGGA
CTATCATTGAAAAAACCAACTACTTGgaagcaaaatttgaagaaccAGAA
AGCTTGTTCACAGCTCCAAAATATGAAATGTTTATAAACAAAGACCTCAG
ACTCACATTAAAATGTTATGGTTGGGCAATCCCTGAAAATGCAGAGATAA
TGCAACATTTTCCAACATTCAACACTGTCACATTGAGTGAATTTATAAAG
ATGCTTGGCTCGTACAAAATATGTGAaggtaataatttttttaacaaata
ctAGCTCAGTCAGGGTCTTCATATCCAGTCCACCTATGTAATTATGATCC
ATGCAGAAggctttttatttttacagtCAAATAATGAAAAGTTGCCATTT
TATTTCAAGGACTCAATCTTGTGGAATTCAAAGAGGCAATCAATCTTCAA
CATGATGTGATTCCAATAATGTTTCAATATCCCCATTCAATATCACCCGA
CGCCGATGCAGTTCCATTATGTCAAAAAGAATATTTAAGAGCGTCAACCT
GTCCCCTACTcatcaaagatgaaaaatgtCCCCATTGCTCAAAAATGGAA
GTCAAGGTCCGCGCTCAGCTGAACCAAAAGAAAAGAATCTTAACATCACC
TGTTCATCCTAATGCACCACTATCATTTGTCTCTCCTGACCGATTAATTT
CAACAATTCAAATGCAAAGACGAGAAAACAAATCTTTGCAGGATGCAAAT
GAAGACCTAAAACAGCGTTTGAAGGCAGCTCTAGAAGAAAGAGCTGTTCC
TGTCAATGGTGAAATCAATGATGCCCTAGTGGATATATTTGAAGgtatac
cAGACGAAAAAGTGCCTCCATTCATGAAGCTCTTCTGGCAGGAGCAGCAA
AAATACCTCAAAACTGAGCATAAAGGACAATTGAGGTATCACCCAGCCAT
CATAAAGTACTGCCTTTCCATTGCTGCCAAGTCATCTTCAGCTTATGAGC
AGTTGAGAGTTTGCACCAAAGATGGAACTGGAGTTCTCATTTTGCCCAGT
CAGCGTACATTAAGAAGCTACCGAAATTATATCAGAACGAAACAAGgTTT
CAACCCTGATATCGTTGAGGATCTCAAAGATCGAACCAAAAATTTCTCAG
ATTCAGAGCGATATGTCACCAT Run BLAST on NCBI protein sequence of TCONS_00043029-protein >TCONS_00043029-protein ID=TCONS_00043029-protein|Name=TCONS_00043029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MFQYPHSISPDADAVPLCQKEYLRASTCPLLIKDEKCPHCSKMEVKVRAQ
LNQKKRILTSPVHPNAPLSFVSPDRLISTIQMQRRENKSLQDANEDLKQR
LKAALEERAVPVNGEINDALVDIFEGIPDEKVPPFMKLFWQEQQKYLKTE
HKGQLRYHPAIIKYCLSIAAKSSSAYEQLRVCTKDGTGVLILPSQRTLRS
YRNYIRTKQGFNPDIVEDLKDRTKNFSDSERYVT Run BLAST on NCBI transcript from alignment at sc0003865:1080..2869+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043029 ID=TCONS_00043029|Name=TCONS_00043029|organism=Clytia hemisphaerica|type=transcript|length=1790bp|location=Sequence derived from alignment at sc0003865:1080..2869+ (Clytia hemisphaerica)
ATCAACTCCACGCTCAACTGACACCATAGCCAAAAGAGAGAAATGCTTAC
AAAATGCTCAAACCGTCAATGCAGATTCCAAAATTGTGCTACTCAAGTTA
TTATGACTTCGTACAAAGGGTGACAAAATTAAAACTTCAACCTGGATGGA
CTATCATTGAAAAAACCAACTACTTGgaagcaaaatttgaagaaccAGAA
AGCTTGTTCACAGCTCCAAAATATGAAATGTTTATAAACAAAGACCTCAG
ACTCACATTAAAATGTTATGGTTGGGCAATCCCTGAAAATGCAGAGATAA
TGCAACATTTTCCAACATTCAACACTGTCACATTGAGTGAATTTATAAAG
ATGCTTGGCTCGTACAAAATATGTGAaggtaataatttttttaacaaata
ctAGCTCAGTCAGGGTCTTCATATCCAGTCCACCTATGTAATTATGATCC
ATGCAGAAggctttttatttttacagtCAAATAATGAAAAGTTGCCATTT
TATTTCAAGGACTCAATCTTGTGGAATTCAAAGAGGCAATCAATCTTCAA
CATGATGTGATTCCAATAATGTTTCAATATCCCCATTCAATATCACCCGA
CGCCGATGCAGTTCCATTATGTCAAAAAGAATATTTAAGAGCGTCAACCT
GTCCCCTACTcatcaaagatgaaaaatgtCCCCATTGCTCAAAAATGGAA
GTCAAGGTCCGCGCTCAGCTGAACCAAAAGAAAAGAATCTTAACATCACC
TGTTCATCCTAATGCACCACTATCATTTGTCTCTCCTGACCGATTAATTT
CAACAATTCAAATGCAAAGACGAGAAAACAAATCTTTGCAGGATGCAAAT
GAAGACCTAAAACAGCGTTTGAAGGCAGCTCTAGAAGAAAGAGCTGTTCC
TGTCAATGGTGAAATCAATGATGCCCTAGTGGATATATTTGAAGGTACCT
TTAATCAGCCAAATTAAGTTctaatcaaatttaatttttcacgccatccg
ccaaatttaaattattgtaCTCATTTTCCAATTACGTGGCATTTCAGGCC
TTATAATATGTTTTAGttatttaattttgtttttgggCTTAAATGTCCTT
CATCCACAAAATaaaattcccgcaaaatttaatttttcaattgattttta
atttcccTCTactgtaaaaaacttttttgaccatccaataaattaaattc
ctgccaaaacttattcctttaaggtataccAGACGAAAAAGTGCCTCCAT
TCATGAAGCTCTTCTGGCAGGAGCAGCAAAAATACCTCAAAACTGAGCAT
AAAGGACAATTGAGGTATCACCCAGCCATCATAAAGTACTGCCTTTCCAT
TGCTGCCAAGTCATCTTCAGCTTATGAGCAGTTGAGAGTTTGCACCAAAG
ATGGAACTGGAGTTCTCATTTTGCCCAGTCAGCGTACATTAAGAAGCTAC
CGAAATTATATCAGAACGAAACAAGGTACCATTTTATTGTTGAAATACTT
TTATATTGAAAGAATACTGACTTCAAAATTGTATAATAAGGTTGagcaaa
atttgtcattctGGAATTAATTTCAACAACTTAAGAtctaacaaaaaaaa
tcatcttttaTTCATAGAGCTTTCTATAACCATTCTTTTACTCTCCTCCA
ACATTTCCAGGAAATTTAGTAAACTTGAaggtaattttaattttgtcgct
ttttctcattttaggTTTCAACCCTGATATCGTTGAGGATCTCAAAGATC
GAACCAAAAATTTCTCAGATTCAGAGCGATATGTCACCAT Coding sequence (CDS) from alignment at sc0003865:1080..2869+ >TCONS_00043029 ID=TCONS_00043029|Name=TCONS_00043029|organism=Clytia hemisphaerica|type=CDS|length=2106bp|location=Sequence derived from alignment at sc0003865:1080..2869+ (Clytia hemisphaerica)
ATGTTTCAATATCCCCATTCAATATCACCCGACGCCGATGCAGTTCCATT
ATGTCAAAAAGAATATTTAAGAGCGTCAACCTGTCCCCTACTcatcaaag
atgaaaaatgtCCCCATTGCTCAAAAATGGAAGTCAAGGTCCGCGCTCAG
CTGAACCAAAAGAAAAGAATCTTAACATCACCTGTTCATCCTAATGCACC
ACTATCATTTGTCTCTCCTGACCGATTAATTTCAACAATTCAAATGCAAA
GACGAGAAAACAAATCTTTGCAGGATGCAAATGAAGACCTAAAACAGCGT
TTGAAGGCAGCTCTAGAAGAAAGAGCTGTTCCTGTCAATGGTGAAATCAA
TGATGCCCTAGTGGATATATTTGAAGgtataccAGACGAAAAAGTGCCTC
CATTCATGAAGCTCTTCTGGCAGGAGCAGCAAAAATACCTCAAAACTGAG
CATAAAGGACAATTGAGGTATCACCCAGCCATCATAAAGTACTGCCTTTC
CATTGCTGCCAAGTCATCTTCAGCTTATGAGCAGTTGAGAGTTTGCACCA
AAGATGGAACTGGAGTTCTCATTTTGCCCAGTCAGCGTACATTAAGAAGC
TACCGAAATTATATCAGAACGAAACAAGgTTTCAACCCTGATATCGTTGA
GGATCTCAAAGATCGAACCAAAAATTTCTCAGATTCAGAGCGATATGTCA
CCATGTTTCAATATCCCCATTCAATATCACCCGACGCCGATGCAGTTCCA
TTATGTCAAAAAGAATATTTAAGAGCGTCAACCTGTCCCCTACTcatcaa
agatgaaaaatgtCCCCATTGCTCAAAAATGGAAGTCAAGGTCCGCGCTC
AGCTGAACCAAAAGAAAAGAATCTTAACATCACCTGTTCATCCTAATGCA
CCACTATCATTTGTCTCTCCTGACCGATTAATTTCAACAATTCAAATGCA
AAGACGAGAAAACAAATCTTTGCAGGATGCAAATGAAGACCTAAAACAGC
GTTTGAAGGCAGCTCTAGAAGAAAGAGCTGTTCCTGTCAATGGTGAAATC
AATGATGCCCTAGTGGATATATTTGAAGgtataccAGACGAAAAAGTGCC
TCCATTCATGAAGCTCTTCTGGCAGGAGCAGCAAAAATACCTCAAAACTG
AGCATAAAGGACAATTGAGGTATCACCCAGCCATCATAAAGTACTGCCTT
TCCATTGCTGCCAAGTCATCTTCAGCTTATGAGCAGTTGAGAGTTTGCAC
CAAAGATGGAACTGGAGTTCTCATTTTGCCCAGTCAGCGTACATTAAGAA
GCTACCGAAATTATATCAGAACGAAACAAGgTTTCAACCCTGATATCGTT
GAGGATCTCAAAGATCGAACCAAAAATTTCTCAGATTCAGAGCGATATGT
CACCATGTTTCAATATCCCCATTCAATATCACCCGACGCCGATGCAGTTC
CATTATGTCAAAAAGAATATTTAAGAGCGTCAACCTGTCCCCTACTcatc
aaagatgaaaaatgtCCCCATTGCTCAAAAATGGAAGTCAAGGTCCGCGC
TCAGCTGAACCAAAAGAAAAGAATCTTAACATCACCTGTTCATCCTAATG
CACCACTATCATTTGTCTCTCCTGACCGATTAATTTCAACAATTCAAATG
CAAAGACGAGAAAACAAATCTTTGCAGGATGCAAATGAAGACCTAAAACA
GCGTTTGAAGGCAGCTCTAGAAGAAAGAGCTGTTCCTGTCAATGGTGAAA
TCAATGATGCCCTAGTGGATATATTTGAAGgtataccAGACGAAAAAGTG
CCTCCATTCATGAAGCTCTTCTGGCAGGAGCAGCAAAAATACCTCAAAAC
TGAGCATAAAGGACAATTGAGGTATCACCCAGCCATCATAAAGTACTGCC
TTTCCATTGCTGCCAAGTCATCTTCAGCTTATGAGCAGTTGAGAGTTTGC
ACCAAAGATGGAACTGGAGTTCTCATTTTGCCCAGTCAGCGTACATTAAG
AAGCTACCGAAATTATATCAGAACGAAACAAGgTTTCAACCCTGATATCG
TTGAGGATCTCAAAGATCGAACCAAAAATTTCTCAGATTCAGAGCGATAT
GTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043029-exon-sc0003865-1491911889:1080..2023 | TCONS_00043029-exon-sc0003865-1491911889:1080..2023 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1510915933:1080..2023 | TCONS_00043029-exon-sc0003865-1510915933:1080..2023 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1575043694:1080..2023 | TCONS_00043029-exon-sc0003865-1575043694:1080..2023 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1491911889:2303..2554 | TCONS_00043029-exon-sc0003865-1491911889:2303..2554 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1510915933:2303..2554 | TCONS_00043029-exon-sc0003865-1510915933:2303..2554 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1575043694:2303..2554 | TCONS_00043029-exon-sc0003865-1575043694:2303..2554 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1491911889:2794..2869 | TCONS_00043029-exon-sc0003865-1491911889:2794..2869 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1510915933:2794..2869 | TCONS_00043029-exon-sc0003865-1510915933:2794..2869 | Clytia hemisphaerica | exon |
| TCONS_00043029-exon-sc0003865-1575043694:2794..2869 | TCONS_00043029-exon-sc0003865-1575043694:2794..2869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003865 | supercontig | sc0003865:1080..2869 + |
Blast
The following BLAST results are available for this feature:
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