TCONS_00043024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043024
Unique NameTCONS_00043024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043024 ID=TCONS_00043024|Name=TCONS_00043024|organism=Clytia hemisphaerica|type=transcript|length=282bp
agaaaatctttgaaaatcctGGACTGGAGAGGCATGAAAGTGCCAAAATG
ACGACAAAGAAGAATCATAAAAGATATAGAATATAAATCAGattttttat
tttgaagaccagcATGCAGCTATGCCGAAATAacaagacgcatgtcgata
ttggACAATTCTACGATATGTTAAAAAGTTTCCACTTGAAACAGCTATAG
ATAGAATGTGGCTCTCTACTTTCAAAGAAATATTCATGCTTTCACTGTTT
GCATTAGTCAAAGCACAAAATCACTGCTCCAC
Run BLAST on NCBI

transcript from alignment at sc0003863:490..6952+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043024 ID=TCONS_00043024|Name=TCONS_00043024|organism=Clytia hemisphaerica|type=transcript|length=6463bp|location=Sequence derived from alignment at sc0003863:490..6952+ (Clytia hemisphaerica)
agaaaatctttgaaaatcctGGACTGGAGAGGCATGAAAGTGCCAAAATG
ACGACAAAGAAGAATCATAAAAGATATAGAATATAAATCAGGTTAATAGA
ATTGTTATTTGTTATTCTATGTGCATTCTATCTTGCTTTGATGTTCTTCT
ATTTTACTCTTCACTCAAACCTTTTCAATGTGATGTGATGTGAAGTGAGT
GaaggttattttttttttaataagttaGCAGGTTCAATTTTGAGGTATTC
AAGGTCATTTGCACGCACTGCTATTGCCTTTATGATCCTTTGGTGTATTG
GTACAATTGTGAGAGGTCTAGATAAAATAAACTTGGTTGTTGGTGATTTC
CTATTTTCATCCTTTCTGGGAAATACGAAATAGGCTATCCCCGGTATAGC
GCTACCTGGTAAGTGtgaggtgggttccgtctccctcGTAGATCTtatct
tgggaagttgatcttcaaattacgTAGTTTttaaggttggcttggctcaa
attttttcatctatggctcaaattttaggcaatttctcatagttttcgaa
aatgttaatttcattaaaaaggacCNCTCCCTCGTAGATCTtatcttggg
aagttgatcttcaaattacgTAGTTTttaaggttggcttggctcaaattt
tttcatctatggctcaaattttaggcaatttctcatagttttcgaaaatg
ttaatttcattaaaaaggaccctgccgacgcaccagaCTTttttaacgaa
caccggacacgcgatagtctggtgtaaaatgagaattttttttaccaccg
gacaatctctacaccggacttatggaagtcggatgtccggtgtcggagaa
ggatatttttttccaccggacaatcgaAACACcagacatgaccagtccgg
acaaatacaccggacagtccggtgcgtcggcagggtcgtccttattaaaa
agcgctgggttattttttcatgaatccctttacaAGTTTTGTGGCACATT
TTTgtgcttgcgagtcaagtaaatGATATAGCACTTTCGTAGCATTAttt
tttgatatgcattttggtgggacgctagtgtgtaatatcaacatccctcg
tctaattccaacacccttctttagagacNTTGCTTGCGAGTCAAGCAAAT
GATATAGCACTTTCGTAGCATTAttttttgatatgcattttggtgggacg
ctagtgtgtaatatcaacatccctcgtctaattccaacacccttctttag
agacaggaataacatgaaagcttgaatcactgattgaaaaaggattattc
ctctctgatcgctaagcaaagaaaaacagtttcaacctttctttcaattt
cagctgataaaaagggtgttggaattagaggagggatgtcgacattagac
caagttacgatACAGTAAtcatggctccgactggggttctaggtcccccc
gctaaatttaggtcccccctaagaacaaggtccccccagcctgataaatt
tttaggtcccagtataataggggaaaaatttttgatgaataatttttttt
caatgtgaaTTTTTACCATTTAGTCAATGAAAACACAAGTAAATAAACAG
TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggggtgcgagcCATG
GTAATTGTCTGTGACATCATTGTTCTTGCCTGGGCTGCAAACattgcaat
tctttcaattaaaaaaaaagcagccaaattatataagcaattttacacAA
CATTTGAAAcatgaaacgcatgcaaactttaataattttccttgtgccca
tcattaaaattttacaactttattacgcttcaagtcaggTGATAAAGATA
ATTTGCGCGCTTAATTggcctggtttccccttccttatttatcacaaaca
cacgctctaggcgctaagaggccgCCCCCATAatggccagtatggcggtc
acaataaattcaaaaggaaaccggattctttttattattttcggttcacg
gtaaaaaggtataacaaaaaattcctcgcgtgcaagaTGTTGTTATGATT
TGGATATCTTccttgaaagcatgctaattagttttttagtgatgactaca
tcgttaaagttttcttttcaaacataAGTAATAGCACATTTCTCATAAta
tcaacaatctgtgacgtgatggGGGGAGTACAATTTATTGATTGGATTgg
taactttggtatgtatttttttatgtttaagattttttattttgaagacc
agcATGCAGCTATGCCGAAATAacaagacgcatgtcgatattggACAATT
CTACGGTACTGTAAAATctaaatagaaattgaattgtgtATTTTAAAATA
CGCAGTTCCTTtataactcaaatcaaattactttggaggttcggtgaaat
ggtggccgaattgccgtcccatgttttatcAGATAGTCCCTTTTAGTCAT
CTTTTGACTGCATTTTAAATTCTCTGTGCTCTAAAGAAGGCCAATGTTTG
ATGCCCTTTGATACCCTGTCAAGATCAACTATCTCAAAACAGGGGTTGGG
TTAGGAGACTCTATTTTGTGGTAAGGCAGACATCCATAATTCAAACCTTC
CAGATGAAACATCAGTCATCTATATAACAAGATGTGTTTGTGaaaacaag
gatgagagttacttGAATCAAGCTCAAGAtctcaagaaaaataaataaaa
attgaaaacttgagACAATTGAAATGACTGATTGCTAACATGCAAGAGCA
AGCttatcaaccaatcaaaatgtgTTATTCAATTCCTGAGATATAGAGCT
TCGATTTGTTGGGCCTTGATTATGGGCTGCAGAGTGAAGATAATTCTGCA
CATCTGCACAAAAGATCCCTTAACAATTAAGTGCTTTTTCTAAGTAATTG
GTTCATTCAGGTCAATTACATAGGTTTTTGGGTTTCTAGCATCCCTTCAG
CTAGTTCAAAATGCAGCTCACACGTCGCAGGTCAGCCCTggcaattcaat
ttttttggccTCGGCATTTTTTTGCCGAAGCAAATGGCTAAATTTGCTGT
TTGCCTTGGCAGAATaggcatttttcatttttcatttttcatttttcatt
tttcatttttcatttttcccaatttaaaatttaaaattgtgtTAAAAAAA
ACAGACAGCTGGAGATCTATAATTGTTTTTGTAGTTCTTCGATTGTTTCG
ACAGTTATCATTTTTagtaaaagtcttttgaaaaatttggcatttttttt
gCCGACGCAAACAGACTATAAACCAATTTACGCCAGGACTGCAGGTTGCA
GGTCAATTCATAGACTTTGGTCACAGGTCACACAAACCACAGACTTGAAG
ATTGTAACCCGTTTGTGACATATGATCACAACATGCTTCTgtaaatatta
tatgtaatggaaatgcTTCAGAATGATTTTTAatattattaatttcgcct
agcgaaagtattacggtCAGCTTCTACTGAAAGCGAAAGTAGAGTATCGG
TAGTATTAGTTTGTGTAACCACGgatgcttccgtataaaagattacatca
tgaatatcattaaaTGAATTGCGAGcatattttagtttattttcttataa
gcatatagatatactttataagaatcaaatcaataactcttgatagatgg
tgatatacctttcggtaattagttcttacagagtaaacaagggacggcgc
acaatatgggcatatttatttttcttataagcatctactttataagaatc
aaatcaatctcATGATAGAgagtgatatacctttcggtaattagttctta
caaagtaaacaaaggaaggtgaacaatatgagcatatttatttttcttat
aagcatttactttataggaatcaaatcaataactcttgatagacggtggt
atacctttcggtaattagttcttacaaagtaaacaagggatggcgtatag
tatgagcatatttacttttcttataagcatttattttatataagaatcaa
atcaataactcttgatcaACAGTGATACACCTTTCGGtatttagttctta
caaagtaaacaagggacggcgcacaatatgagcatatttattttttataa
acatatactttgtaagagttcttaaaaattaaacagcaaTTGTTCTTTAA
ATTGGTCTAATTGTTTTAGTGATTTTAAGtctcgttgttcttgtaaaatt
gttacatcaaggctcgatgtaaagtagatttcagattaccTTCAATCTCT
AATTCTTCTTTTTCACatgcagttcaaattctaggcaAAATCTTTGACTT
AAAGTCGTCTTGTTATATTTTAAATAagtgtttttcaaatattatctTTG
CGTTTTTTATATATAGTAATTAAAACTGACCTGTCAGCACTGACCTGTGA
CGTCACGTCTGTGTTTTAAACTAGCCGGCATTCCTTTGCTCACAAGTCAA
GCAAACAATAAAGCGCTTTCACAGCATTAATCTGTGATGCACATTTTGGC
ATAATactagtgtggctaactgtcGGGACATTTCTTGCGTCCTTCCAAAG
ATCATGATCTGTATTATAGTGTATGTTTTTCTATTGATTTCTTTCTAGAT
ATGTTAAAAAGTTTCCACTTGAAACAGCTATAGATAGAATGTGGCTCTCT
ACTTTCAAAGAAATATTCATGCTTTCACTGTTTGCATTAGTCAAAGCACA
AAGTATGTattatgataatttatttttggCTAGATCCTGCAAGATCAATT
TTGAAATAGTTGTGTTGTTTTTCAATCAAGGATGagcatagtgcggaaag
gggtctgatccccccccttcttaaatgatcccccctNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCTTTATAG
ATCACTGCTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026771XLOC_026771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043024-exon-sc0003863-1491911889:490..580TCONS_00043024-exon-sc0003863-1491911889:490..580Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1510915933:490..580TCONS_00043024-exon-sc0003863-1510915933:490..580Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1575043694:490..580TCONS_00043024-exon-sc0003863-1575043694:490..580Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1491911889:3521..3594TCONS_00043024-exon-sc0003863-1491911889:3521..3594Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1510915933:3521..3594TCONS_00043024-exon-sc0003863-1510915933:3521..3594Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1575043694:3521..3594TCONS_00043024-exon-sc0003863-1575043694:3521..3594Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1491911889:5888..5991TCONS_00043024-exon-sc0003863-1491911889:5888..5991Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1510915933:5888..5991TCONS_00043024-exon-sc0003863-1510915933:5888..5991Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1575043694:5888..5991TCONS_00043024-exon-sc0003863-1575043694:5888..5991Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1491911889:6940..6952TCONS_00043024-exon-sc0003863-1491911889:6940..6952Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1510915933:6940..6952TCONS_00043024-exon-sc0003863-1510915933:6940..6952Clytia hemisphaericaexon
TCONS_00043024-exon-sc0003863-1575043694:6940..6952TCONS_00043024-exon-sc0003863-1575043694:6940..6952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003863supercontigsc0003863:490..6952 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09776	2.71564	0	0.754921	5.06554	5.06765	2.66491	4.50591	5.07671	3.61541	9.1892	2.84544	6.03567	4.40249	1.97137	2.15221	3.89717	1.66279	4.93807	5.02005	5.48425	10.8515	6.7262	5.85458	4.56022	8.90965	10.666	13.5091	11.1074	10.6635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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