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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043023 ID=TCONS_00043023|Name=TCONS_00043023|organism=Clytia hemisphaerica|type=transcript|length=930bp
agaaaatctttgaaaatcctGGACTGGAGAGGCATGAAAGTGCCAAAATG
ACGACAAAGAAGAATCATAAAAGATATAGAATATAAATCAGattttttat
tttgaagaccagcATGCAGCTATGCCGAAATAacaagacgcatgtcgata
ttggACAATTCTACGGTACTGTAAAATctaaatagaaattgaattgtgtA
TTTTAAAATACGCAGTTCCTTtataactcaaatcaaattactttggaggt
tcggtgaaatggtggccgaattgccgtcccatgttttatcAGATAGTCCC
TTTTAGTCATCTTTTGACTGCATTTTAAATTCTCTGTGCTCTAAAGAAGG
CCAATGTTTGATGCCCTTTGATACCCTGTCAAGATCAACTATCTCAAAAC
AGGGGTTGGGTTAGGAGACTCTATTTTGTGGTAAGGCAGACATCCATAAT
TCAAACCTTCCAGATGAAACATCAGTCATCTATATAACAAGATGTGTTTG
TGaaaacaaggatgagagttacttGAATCAAGCTCAAGAtctcaagaaaa
ataaataaaaattgaaaacttgagACAATTGAAATGACTGATTGCTAACA
TGCAAGAGCAAGCttatcaaccaatcaaaatgtgTTATTCAATTCCTGAG
ATATAGAGCTTCGATTTGTTGGGCCTTGATTATGGGCTGCAGAGTGAAGA
TAATTCTGCACATCTGCACAAAAGATCCCTTAACAATTAAGTGCTTTTTC
TAAGTAATTGGTTCATTCAGGTCAATTACATAGGTTTTTGGGTTTCTAGC
ATCCCTTCAGCTAGTTCAAAATGCAGCTCACACGTCGCAGGTCAGCCCTg
gcaattcaatttttttggccTCGGCATTTTTTTGCCGAAGCAAATGGCTA
AATTTGCTGTTTGCCTTGGCAGAATaggca Run BLAST on NCBI transcript from alignment at sc0003863:490..4359+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043023 ID=TCONS_00043023|Name=TCONS_00043023|organism=Clytia hemisphaerica|type=transcript|length=3870bp|location=Sequence derived from alignment at sc0003863:490..4359+ (Clytia hemisphaerica)
agaaaatctttgaaaatcctGGACTGGAGAGGCATGAAAGTGCCAAAATG
ACGACAAAGAAGAATCATAAAAGATATAGAATATAAATCAGGTTAATAGA
ATTGTTATTTGTTATTCTATGTGCATTCTATCTTGCTTTGATGTTCTTCT
ATTTTACTCTTCACTCAAACCTTTTCAATGTGATGTGATGTGAAGTGAGT
GaaggttattttttttttaataagttaGCAGGTTCAATTTTGAGGTATTC
AAGGTCATTTGCACGCACTGCTATTGCCTTTATGATCCTTTGGTGTATTG
GTACAATTGTGAGAGGTCTAGATAAAATAAACTTGGTTGTTGGTGATTTC
CTATTTTCATCCTTTCTGGGAAATACGAAATAGGCTATCCCCGGTATAGC
GCTACCTGGTAAGTGtgaggtgggttccgtctccctcGTAGATCTtatct
tgggaagttgatcttcaaattacgTAGTTTttaaggttggcttggctcaa
attttttcatctatggctcaaattttaggcaatttctcatagttttcgaa
aatgttaatttcattaaaaaggacCNCTCCCTCGTAGATCTtatcttggg
aagttgatcttcaaattacgTAGTTTttaaggttggcttggctcaaattt
tttcatctatggctcaaattttaggcaatttctcatagttttcgaaaatg
ttaatttcattaaaaaggaccctgccgacgcaccagaCTTttttaacgaa
caccggacacgcgatagtctggtgtaaaatgagaattttttttaccaccg
gacaatctctacaccggacttatggaagtcggatgtccggtgtcggagaa
ggatatttttttccaccggacaatcgaAACACcagacatgaccagtccgg
acaaatacaccggacagtccggtgcgtcggcagggtcgtccttattaaaa
agcgctgggttattttttcatgaatccctttacaAGTTTTGTGGCACATT
TTTgtgcttgcgagtcaagtaaatGATATAGCACTTTCGTAGCATTAttt
tttgatatgcattttggtgggacgctagtgtgtaatatcaacatccctcg
tctaattccaacacccttctttagagacNTTGCTTGCGAGTCAAGCAAAT
GATATAGCACTTTCGTAGCATTAttttttgatatgcattttggtgggacg
ctagtgtgtaatatcaacatccctcgtctaattccaacacccttctttag
agacaggaataacatgaaagcttgaatcactgattgaaaaaggattattc
ctctctgatcgctaagcaaagaaaaacagtttcaacctttctttcaattt
cagctgataaaaagggtgttggaattagaggagggatgtcgacattagac
caagttacgatACAGTAAtcatggctccgactggggttctaggtcccccc
gctaaatttaggtcccccctaagaacaaggtccccccagcctgataaatt
tttaggtcccagtataataggggaaaaatttttgatgaataatttttttt
caatgtgaaTTTTTACCATTTAGTCAATGAAAACACAAGTAAATAAACAG
TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggggtgcgagcCATG
GTAATTGTCTGTGACATCATTGTTCTTGCCTGGGCTGCAAACattgcaat
tctttcaattaaaaaaaaagcagccaaattatataagcaattttacacAA
CATTTGAAAcatgaaacgcatgcaaactttaataattttccttgtgccca
tcattaaaattttacaactttattacgcttcaagtcaggTGATAAAGATA
ATTTGCGCGCTTAATTggcctggtttccccttccttatttatcacaaaca
cacgctctaggcgctaagaggccgCCCCCATAatggccagtatggcggtc
acaataaattcaaaaggaaaccggattctttttattattttcggttcacg
gtaaaaaggtataacaaaaaattcctcgcgtgcaagaTGTTGTTATGATT
TGGATATCTTccttgaaagcatgctaattagttttttagtgatgactaca
tcgttaaagttttcttttcaaacataAGTAATAGCACATTTCTCATAAta
tcaacaatctgtgacgtgatggGGGGAGTACAATTTATTGATTGGATTgg
taactttggtatgtatttttttatgtttaagattttttattttgaagacc
agcATGCAGCTATGCCGAAATAacaagacgcatgtcgatattggACAATT
CTACGGTACTGTAAAATctaaatagaaattgaattgtgtATTTTAAAATA
CGCAGTTCCTTtataactcaaatcaaattactttggaggttcggtgaaat
ggtggccgaattgccgtcccatgttttatcAGATAGTCCCTTTTAGTCAT
CTTTTGACTGCATTTTAAATTCTCTGTGCTCTAAAGAAGGCCAATGTTTG
ATGCCCTTTGATACCCTGTCAAGATCAACTATCTCAAAACAGGGGTTGGG
TTAGGAGACTCTATTTTGTGGTAAGGCAGACATCCATAATTCAAACCTTC
CAGATGAAACATCAGTCATCTATATAACAAGATGTGTTTGTGaaaacaag
gatgagagttacttGAATCAAGCTCAAGAtctcaagaaaaataaataaaa
attgaaaacttgagACAATTGAAATGACTGATTGCTAACATGCAAGAGCA
AGCttatcaaccaatcaaaatgtgTTATTCAATTCCTGAGATATAGAGCT
TCGATTTGTTGGGCCTTGATTATGGGCTGCAGAGTGAAGATAATTCTGCA
CATCTGCACAAAAGATCCCTTAACAATTAAGTGCTTTTTCTAAGTAATTG
GTTCATTCAGGTCAATTACATAGGTTTTTGGGTTTCTAGCATCCCTTCAG
CTAGTTCAAAATGCAGCTCACACGTCGCAGGTCAGCCCTggcaattcaat
ttttttggccTCGGCATTTTTTTGCCGAAGCAAATGGCTAAATTTGCTGT
TTGCCTTGGCAGAATaggca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043023-exon-sc0003863-1491911889:490..580 | TCONS_00043023-exon-sc0003863-1491911889:490..580 | Clytia hemisphaerica | exon |
| TCONS_00043023-exon-sc0003863-1510915933:490..580 | TCONS_00043023-exon-sc0003863-1510915933:490..580 | Clytia hemisphaerica | exon |
| TCONS_00043023-exon-sc0003863-1575043694:490..580 | TCONS_00043023-exon-sc0003863-1575043694:490..580 | Clytia hemisphaerica | exon |
| TCONS_00043023-exon-sc0003863-1491911889:3521..4359 | TCONS_00043023-exon-sc0003863-1491911889:3521..4359 | Clytia hemisphaerica | exon |
| TCONS_00043023-exon-sc0003863-1510915933:3521..4359 | TCONS_00043023-exon-sc0003863-1510915933:3521..4359 | Clytia hemisphaerica | exon |
| TCONS_00043023-exon-sc0003863-1575043694:3521..4359 | TCONS_00043023-exon-sc0003863-1575043694:3521..4359 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003863 | supercontig | sc0003863:490..4359 + |
Blast
The following BLAST results are available for this feature:
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