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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043020 ID=TCONS_00043020|Name=TCONS_00043020|organism=Clytia hemisphaerica|type=transcript|length=1659bp
ccagcacttttcgaaatccgctcgttgatatgattcttttgagctatata
tgaacgttaaggaataattggaagcggtgcgcgtcacgcaaaatatattt
ggcacatgccttgtttcacccgagtgGGTTACGATAGTAGCCATACAGTT
GGTTTGTTTGATGCCGTTTTGAGTATTAATGCTAGCATTAAAGTTATCTG
AGATGGCTTGGATAAGTCCATTGACTGCGCTAAATTGGgacacatttttg
ttttgagctgCTGCTGAAACTTTGAACCGTCGAGTTTCCTGATAGGTGGA
GCATACACCGTAACAGTGAAAATGATCGATTACTTCTCTGCTTTTAGCAA
CCAAAGATTAACCTACTTGGAGCATGGTAGGCTTTCCGACAATCGTGCTT
GATACAATGCTTCCTATCATAGGCTGCAGGCAGTGAATATTTTAACTTAT
CTGAAATTTCTGAGAGTAGATCAAGAAGTGTCTTGCTACCGNTCATCGTT
TTCGAGTTTCAATATTGTTTCTGCTTTTGTCTTTAGCATAACTATCGTTG
CAGTTCCTGGCGATGACAGCAAAAATACTTCGTCTTTCATCTTCTCTTTC
AGTTTCAACATAAATCTACTTCTATTCGATTCGGTACCGCCATTATCAAT
ATAAAGATtatgaatctcaatcgaattcCAAACCTTTTCAGGGTCACTCT
TTAGTGCGGTAATAACATTTTGGAGAGACTTATCTGAGCTTGACTCATTA
GCAGACATTCGCCTCGCAGAATCAATGCTTCTTTCATTTGTGAACGATTT
GTAGCAGTTTACATGATATCGTCCATTAGCAGCATGCAAGTCTGATGTAG
CTCCTTCCAAACGAACTCTTACTGCCTCACTTGTATCGTCTTTCCTCTTA
TCGCAAatctgaaaaattatgaaagcaAAACTTGCTAAACATCTCTTCCT
CTATATTCCCCCTCCTTATCTCACTCCACCCCCCTCCCCCTCACCTCGCA
ATCTCTCCATCCATCCTTATCCTCTCTCCTGTCATCTTTTCCTTGTCAAT
TTAACGTTCTTTCACTTATTGTCTGAAATTCGAAATTGTATTTCGtattc
gaaaaaagaaattaatcaGAAAAGCAGAAATGCACATGTTAGAAATATAA
CATACCTCTAGTAAGGTTTCCTTTACTGTCTTCATTCCAGCTCCTCTGTC
TGCTGTTCTACAAAGCATACCTTTATTCTTTTTCCATCGTTTTGGGTTCT
TTGGATCACGTTGGACTAAACATGTGCTCCCACAAAATAGGCAATGTTCA
TTAAAATCGAACGCAGTATCAGATCTCCTGGTCCGTTTTGCTGCAGGTTG
ATGGCTGTCTGAAGTTTTACGTTTATGTCTCTGAATATGGTCTGTAGATG
TATACTCTAGAAGACATTCTTTATGAACAAATTTCATTGCTTCTCCACTA
AATAAATCGAGGTTATCTTTACGTTTTCGACTTGCCTTTTTGACTATTGA
TAGTCGATTTTGAGTTAATTCCAATAATAATGCTCTTTCTTCTTCTGAAT
TTCTCCTTCTTTTCCTTCTGTTTCTTCCTCCATTTTGATCCTTCTACTAt
tctattttctttctttttcactaAAGATAAAAAACGACAATTTGACATTT
GAACTCCAT Run BLAST on NCBI transcript from alignment at sc0003862:2731..4389 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043020 ID=TCONS_00043020|Name=TCONS_00043020|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at sc0003862:2731..4389 (Clytia hemisphaerica)
ATGGAGTTCAAATGTCAAATTGTCGTTTTTTATCTTtagtgaaaaagaaa
gaaaatagaaTAGTAGAAGGATCAAAATGGAGGAAGAAACAGAAGGAAAA
GAAGGAGAAATTCAGAAGAAGAAAGAGCATTATTATTGGAATTAACTCAA
AATCGACTATCAATAGTCAAAAAGGCAAGTCGAAAACGTAAAGATAACCT
CGATTTATTTAGTGGAGAAGCAATGAAATTTGTTCATAAAGAATGTCTTC
TAGAGTATACATCTACAGACCATATTCAGAGACATAAACGTAAAACTTCA
GACAGCCATCAACCTGCAGCAAAACGGACCAGGAGATCTGATACTGCGTT
CGATTTTAATGAACATTGCCTATTTTGTGGGAGCACATGTTTAGTCCAAC
GTGATCCAAAGAACCCAAAACGATGGAAAAAGAATAAAGGTATGCTTTGT
AGAACAGCAGACAGAGGAGCTGGAATGAAGACAGTAAAGGAAACCTTACT
AGAGGTATGTTATATTTCTAACATGTGCATTTCTGCTTTTCtgattaatt
tcttttttcgaataCGAAATACAATTTCGAATTTCAGACAATAAGTGAAA
GAACGTTAAATTGACAAGGAAAAGATGACAGGAGAGAGGATAAGGATGGA
TGGAGAGATTGCGAGGTGAGGGGGAGGGGGGTGGAGTGAGATAAGGAGGG
GGAATATAGAGGAAGAGATGTTTAGCAAGTTTtgctttcataatttttca
gatTTGCGATAAGAGGAAAGACGATACAAGTGAGGCAGTAAGAGTTCGTT
TGGAAGGAGCTACATCAGACTTGCATGCTGCTAATGGACGATATCATGTA
AACTGCTACAAATCGTTCACAAATGAAAGAAGCATTGATTCTGCGAGGCG
AATGTCTGCTAATGAGTCAAGCTCAGATAAGTCTCTCCAAAATGTTATTA
CCGCACTAAAGAGTGACCCTGAAAAGGTTTGgaattcgattgagattcat
aATCTTTATATTGATAATGGCGGTACCGAATCGAATAGAAGTAGATTTAT
GTTGAAACTGAAAGAGAAGATGAAAGACGAAGTATTTTTGCTGTCATCGC
CAGGAACTGCAACGATAGTTATGCTAAAGACAAAAGCAGAAACAATATTG
AAACTCGAAAACGATGANCGGTAGCAAGACACTTCTTGATCTACTCTCAG
AAATTTCAGATAAGTTAAAATATTCACTGCCTGCAGCCTATGATAGGAAG
CATTGTATCAAGCACGATTGTCGGAAAGCCTACCATGCTCCAAGTAGGTT
AATCTTTGGTTGCTAAAAGCAGAGAAGTAATCGATCATTTTCACTGTTAC
GGTGTATGCTCCACCTATCAGGAAACTCGACGGTTCAAAGTTTCAGCAGc
agctcaaaacaaaaatgtgtcCCAATTTAGCGCAGTCAATGGACTTATCC
AAGCCATCTCAGATAACTTTAATGCTAGCATTAATACTCAAAACGGCATC
AAACAAACCAACTGTATGGCTACTATCGTAACCcactcgggtgaaacaag
gcatgtgccaaatatattttgcgtgacgcgcaccgcttccaattattcct
taacgttcatatatagctcaaaagaatcatatcaacgagcggatttcgaa
aagtgctgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043020-exon-sc0003862-1491911889:2731..4389 | TCONS_00043020-exon-sc0003862-1491911889:2731..4389 | Clytia hemisphaerica | exon |
| TCONS_00043020-exon-sc0003862-1510915933:2731..4389 | TCONS_00043020-exon-sc0003862-1510915933:2731..4389 | Clytia hemisphaerica | exon |
| TCONS_00043020-exon-sc0003862-1575043694:2731..4389 | TCONS_00043020-exon-sc0003862-1575043694:2731..4389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003862 | supercontig | sc0003862:2731..4389 . |
Blast
The following BLAST results are available for this feature:
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