TCONS_00043017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043017
Unique NameTCONS_00043017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043017 ID=TCONS_00043017|Name=TCONS_00043017|organism=Clytia hemisphaerica|type=transcript|length=1090bp
ttcagataaGTGAATAACAATGGAGGAGGTTTCAGATGGAGAtcttgaat
tggcaaaaataagattcaaaaaactttttcaaaaagcaaaacaaCTTGGG
TTGTCAGATAAGGATATCAGGAAGCttgattttgttcaaaaataccAACC
AAAGAAATTAAACGTTTTGGCAATTCTAATAAAATGGGTGTTTTACCTCC
TAGTTGTTATTGCTTTAGTAGTTGTAGCTGTTTATGTTGGAATACAGAAA
GGATGGGTCGAAGAAAAGCAGTTGGctgaattttcaacttttttcactaa
cATTGATTTGCAGTCAGACAATTGTGTTGTCCCACTAACTGATGCTGTCT
TAGATTTCTTTAGACCACCTGTTGACTNATTTGCAGACTGACAATTGCGT
TGTCCCACTAACTGATGCTGTCTTAGATTTCTTTAGACCACCTGTTGACT
GCTCCTTCTGTGAAGGTATTAATAAGTTTGACCGTGTTGAGAAATTAAGC
TCTGAAGTTTTCATGGAGAAATACGCTTATTCTGGTCGACCCGTCATTAT
AACAGATGTTATGACAAACTGGACAGCTCCGCGACATTTCAGCTTTGACT
TCTTCAagaaattatataaaaagaataGTCCAGTTTTGAATCCAGATGAT
CGAAAAGATTGCCAGTTTTTTCCATACAAAACCAGCTTTCAAGGCCTCat
tgatgtttttaaaatgcCAAAGAAGATGGTGGAAATGAAAGGTGATCGTT
GGTACATTGGCTGGAGTAATTGTGACCCAGATGCAGCCAACAAATTAAGG
AAATATTATCAAAGACCTTACTTCTTATCAGGAGAAATGGAATCGAGTCG
AACGGACTGGATCTTCATGGGGACACCTGGGTACGGAGCTCACATACATA
TCGATTCGGTAGACCACTCATCATGGCAAGCTCAAGTTCACGGTAACAAG
ACATGGACTTTACAACCACCGCCTGAATGTTATTATAAATGTGGTGGAGG
TTTCAAAGATACTGTACATGCTGGCGAAGTCAGTAAGTAACTTTTCTACC
TATGATAATATTTTTCTAAGACATACTCTAATCGGTAGta
Run BLAST on NCBI

protein sequence of TCONS_00043017-protein

>TCONS_00043017-protein ID=TCONS_00043017-protein|Name=TCONS_00043017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MEKYAYSGRPVIITDVMTNWTAPRHFSFDFFKKLYKKNSPVLNPDDRKDC
QFFPYKTSFQGLIDVFKMPKKMVEMKGDRWYIGWSNCDPDAANKLRKYYQ
RPYFLSGEMESSRTDWIFMGTPGYGAHIHIDSVDHSSWQAQVHGNKTWTL
QPPPECYYKCGGGFKDTVHAGEVSK
Run BLAST on NCBI

transcript from alignment at sc0003859:2119..7038-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043017 ID=TCONS_00043017|Name=TCONS_00043017|organism=Clytia hemisphaerica|type=transcript|length=4920bp|location=Sequence derived from alignment at sc0003859:2119..7038- (Clytia hemisphaerica)
TTCAGATAAGTGAATAACAATGGAGGAGGTTTCAGATGGAGATCTTGAAT
TGGCAAAAATAAGATTCAAAAAACTTTTTCAAAAAGCAAAACAACTTGGG
TTGTCAGATAAGGATATCAGGAAGCTTGATTTTGTTCAAAAATACCAACC
AAAGAAATTAAACGTTTTGGCAATTCTAATAAAATGGGTGTTTTACCTCC
TAGTTGTTATTGCTTTAGTAGTTGTAGCTGTTTATGTTGGAATACAGAAA
GGATGGGTCGAAGAAAAGCAGTTGGCTGAATTTTCAACTTTTTTCACTAA
CATTGATTTGCAGTCAGACAATTGTGTTGTCCCACTAACTGATGCTGTCT
TAGATTTCTTTAGACCACCTGTTGACTNATTTGCAGACTGACAATTGCGT
TGTCCCACTAACTGATGCTGTCTTAGATTTCTTTAGACCACCTGTTGACT
GCTCCTTCTGTGAAGGTATTAATAAGTTTGACCGTGTTGAGAAATTAAGC
TCTGAAGTTTTCATGGAGAAATACGCTTATTCTGGTCGACCCGTCATTAT
AACAGATGTTATGACAAACTGGACAGCTCCGCGACATTTCAGCTTTGACT
TCTTCAAGAAATTATATAAAAAGAATAGTCCAGTTTTGAATCCAGATGAT
CGAAAAGATTGCCAGTTTTTTCCATACAAAACCAGCTTTCAAGGCCTCAT
TGATGTTTTTAAAATGCCAAAGAAGATGGTGGAAATGAAAGGTGATCGTT
GGTACATTGGCTGGTGAGTGAGTTTTATTCATAACATTTTCTACGCGTAG
TAATTTCCTAGGAATATTTATTATATTTAATATATTTAATTTTCTAGGCC
AATTCCTAATGAAATAGGATGGTTCACACTTCACTTCACTTCATTTCACT
TTTTAAGATTCTTAGTTAATAATAGTCTCGATTTCAAGACCATTATTCCT
ATTACGCAAAATGGGGGCAATTCTTCTACAAAGTAAAAAATAGGAGTATG
TCTGCCATAAAAAAAACCGCGCGAGAGAGTGTTTGAATAATTGGACCTAC
CCCGGTGGAGGTCCTATAAATTAACCTCTGTCCGTCCGTCCGTCCATCCG
TCCACGTGCGTTACCAACTTTTCTCGAGATTGGCTCAATAGTTTTGTCTG
ATTTTTTGCACAAAGATGTGTAACTAAACCCTCGAATGTGACGGAGCCCG
ATTTTCAAAAAAAAATGTTTAATTGGGCAAATTTGGGCCAAAAAACGGCT
AAAAAATGGGTTTTTTGGACTTTGTGAAAAATTGAATCATTAATTTTTTC
TATTCTTTTGCTTGAAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAA
GCAGATTTTCGCAAAAAATTTTTGATGGCTCAAAAACGCATGTTTATCTA
TAAGAATCACTATTAATAAGCATACATCAATGCTCTTAGTCAAATTACTC
AATTTTTTTATGAGATAGATGTTTTTTTGCTCATGAGGGCTTACTTTTGA
ATAATATGTGTGTTTAGACATGAAATTTTGGTTGCTTGGCGTGTTTTTAT
TAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTATTTATGAATTTTT
GCACAAAGATGCATAACTTTAAACCCTCGAATGTGACGGAGCTCGATTTT
TGAAGAAAAAAAAATTGGGGTAAATTTCAGCTAAAAAACGGCCAAAAAGA
GATTTTTTGCATGAAAGTAGGTAAAAGATGGTTCAAGCAGATTTTTGTAA
AAAAAGAATTTTTCAGCTCAAAAAACGCATCTTTATCTATAAGAATCTCT
ATTAATAAGCATACATTAATGTTCTTAGCCAAATTACTAAATTTTTTGAC
GAGATTGATGTTTTTTTGCTTACAAAGTCTTGAATATGAAAGAATATTTC
AAGAGCATGAAATTTTGGTTTCTAAATGTTTTTTTTATAAGAAACAAACG
ACTAATTTTAATAGATCGTCAATATTTGTGTTCTGAATGATTGTTTAATG
GTCACGTCACGTAGATATCAATTATAAATATGTTAAATGCACAACCAGGT
AGGTCCATAAAAGTATCATTTGTTTTTCCTCTTTTGACGAGCGCACTTTT
CTTTTGAAGCACTGTTCACCTTTTAGTGTTTGATAATTAGGTGAAGTTGA
TTATTGACCTGGAATTTTAAATTATTAGTCTAGATCTAGACTAAGTTCGT
TCGTTCGTTTCTTGCGAGAAATGTTCTTTTTTACTCTTTTCTGGCTCTGT
CACTTTTTTGCATCACTGTCGAACGAACGAACGAACGAACGAACGAACGA
ACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAAC
GAACGTTCTTTGCACAGTGATGCAAAAAAGTGATTCCCAAAAAGTGACGG
AGTCCAATTTTGGGCAAACTTGGGCCAAAATGTGCCTAAAAATGGGGTTT
TTTGGACTTGTGAAATTGCTTCATTAGTTTTTTCTCATTTTTTGCATAAA
GATAGGGCAAGGTTCTCTAAAAAGTGGCTCAAGCAGTTTTTTTGGAATTT
TTTTTTGATCGTAAAAATTGGATCTTCTTATTTGGGGAAATTCCCTTATG
TTATTTTTAGTGAAAAAGAACATTTCTCGCAATTGGCTTTATATTTTTTC
AGATTTTTTGCAGTTTGATGTAAAATGGTAATATTCAAAATCTGATGAAG
CCCGATTATCAAAAAATAATTTTTTGGGCTAAAATTTGGGCCAAAAGTGT
CTAATATGGGTTTTTTGGAAATCTCCTTTTATCGTCAATAGGGAAATCAC
GCTAAAATATTTGTTCACCCCAGTATACACTATAAGTCATACGACTTAAA
CTATACTTCACAGGCCGATATTAATTTGAGCTGTTATACTCACGGTAATT
TGAGTCATGCATGTTTCTAGTCATATCTTGAATCGTAGTTACGATTTTTC
TATACGCATATGTATTTCCTCTGATTTCCTGGTAATGTATTTAACAAGGA
TTTCTATCAATGAAGTAATATGGGAGTTGAAAATTTTGGAATTTTTCCAG
CATAAATCCATAAAAATGCCTCAAAATTTATACAAAATTATTATCTGTTT
TCCACGTGACCCCTTCAGGATAGTGTAGCTCACAAAACCAAAAAAATGTA
TTTTTCATCAAGAATGAGGATAAGAGATCGGGATCAATCGGTTTTATCAA
ACGTGTTAATAATGCTTTTCATGGTCGTGGTAGTATTTGAGTTCAACCGC
GAAATTTAATTCCGGCGAAAATTCATCCACTGATAAGTAGTTAAGTATTT
ATTTCATAGAGTTTTGCCTATTACTTTATTTTTCACAGGAGTAATTGTGA
CCCAGATGCAGCCAACAAATTAAGGAAATATTATCAAAGACCTTACTTCT
TATCAGGAGAAATGGAATCGAGTCGAACGGACTGGATCTTCATGGGGACA
CCTGGGTACGGAGCTCACATACATGTAAGTTGTTTCTTGTTCAAAATGGA
AATTTTTGTCTTTCTGCTTGTTTTTAATTTATAAGCATAACTTTTATACG
GATTTTGTTGAATTTGGTGAAAAAACGAGCACATCATAACCATATAAGTG
AGCTTTGGTCATTGATCATGGATCATCATTGGTCATGGGTTGTGGTTGTG
TAATTGGGAAGATTCATTTTTCTTTTTTCGGAAAAATGAGCATATTACAA
GCATAATTTGAGCTTGATACCAATAGCTAAGCACAACTGAGCCTGTTTTC
CAAAAATGAATATGCTTATAGAAGACGCCTATTTCGTTGTGTTGAACATC
CATGCGATGATTTTATTTTTAGCTACGACAATAAATATTTTTGAAAAGCA
AATTGCTCTTAAAAATATGCTGACAAAATTGGGTTCAGATTTACAGTAGC
CATAACTCTTTGACATTATAAGCATATAATTTGAGCCTGACTTAAAGTTT
TGATATTTTTGATTATCAACAAACATAAGTTGGTAAGACTCGCCCAATTT
TTAGCATTCACCTGGATAAGACGTTTTTTATAAGCATAGGATAAATTTTT
GTGAGCCTCGAGCATGCTTAGCAAAACGCCTTTTTTGAGCCTCGAATATG
TTTATGTATGCTAATAGCCTATGTGATTTGTTTATTTTGCATTTTATGTA
TTCTTTTTAATAATTTATGAGATTAAATGCTTTGTAATTTGGTAAACTGA
GGGTAAGCATATGCTTAGGGGCCATCCACATAGTACGTACGCACTAAGGA
GGGGGGAGGGGGTCTTCTCAAAAGGGTATACTTGCGTATAGGGGGAGGAG
AGGGGTCAAAGGAAAATGTATGTACGCAGAGAATTTTTTTTGTCGACTTT
TACGCTTGTTATACGCATCAAGGAAAAGAAAAGGTTTCTTGATAAACATT
GAGTTTCATGTATGAAACAAAGGTCCGAACCAAACGATTTGATTTCGAAA
TTTTCTTCAACCGAGGGGGGAGGGTGAATGAAAAAGTACGTACTTACCAA
AGGGGGTATAACTATTTGCGTACGCTTGCGTACAGGGGGAGGGGTACTCG
ATTTTCGACATTTTAGTGCGTACGTACTATGTGGACGGCCCCTTAGGCAA
TGCTTGAATTTTTCCAAGATTTGAGCCTCGATATGCTTATAAATAAAAAA
ACATGTATAGCCCTTATTCTTACCCTTGAAGGTCGTTTGATTGATATTAT
TGCATGTTTTGGAACCTCTTAATATTTAGATCGATTCGGTAGACCACTCA
TCATGGCAAGCTCAAGTTCACGGTAACAAGACATGGACTTTACAACCACC
GCCTGAATGTTATTATAAATGTGGTGGAGGTTTCAAAGATACTGTACATG
CTGGCGAAGTCAGTAAGTAACTTTTCTACCTATGATAATATTTTTCTAAG
ACATACTCTAATCGGTAGTA

Coding sequence (CDS) from alignment at sc0003859:2119..7038-

>TCONS_00043017 ID=TCONS_00043017|Name=TCONS_00043017|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0003859:2119..7038- (Clytia hemisphaerica)
ATCGATTCGGTAGACCACTCATCATGGCAAGCTCAAGTTCACGGTAACAA
GACATGGACTTTACAACCACCGCCTGAATGTTATTATAAATGTGGTGGAG
GTTTCAAAGATACTGTACATGCTGGCGAAGTCAGTAAGTAAGAGTAATTG
TGACCCAGATGCAGCCAACAAATTAAGGAAATATTATCAAAGACCTTACT
TCTTATCAGGAGAAATGGAATCGAGTCGAACGGACTGGATCTTCATGGGG
ACACCTGGGTACGGAGCTCACATACATATGGAGAAATACGCTTATTCTGG
TCGACCCGTCATTATAACAGATGTTATGACAAACTGGACAGCTCCGCGAC
ATTTCAGCTTTGACTTCTTCAAGAAATTATATAAAAAGAATAGTCCAGTT
TTGAATCCAGATGATCGAAAAGATTGCCAGTTTTTTCCATACAAAACCAG
CTTTCAAGGCCTCATTGATGTTTTTAAAATGCCAAAGAAGATGGTGGAAA
TGAAAGGTGATCGTTGGTACATTGGCTGATCGATTCGGTAGACCACTCAT
CATGGCAAGCTCAAGTTCACGGTAACAAGACATGGACTTTACAACCACCG
CCTGAATGTTATTATAAATGTGGTGGAGGTTTCAAAGATACTGTACATGC
TGGCGAAGTCAGTAAGTAAGAGTAATTGTGACCCAGATGCAGCCAACAAA
TTAAGGAAATATTATCAAAGACCTTACTTCTTATCAGGAGAAATGGAATC
GAGTCGAACGGACTGGATCTTCATGGGGACACCTGGGTACGGAGCTCACA
TACATATGGAGAAATACGCTTATTCTGGTCGACCCGTCATTATAACAGAT
GTTATGACAAACTGGACAGCTCCGCGACATTTCAGCTTTGACTTCTTCAA
GAAATTATATAAAAAGAATAGTCCAGTTTTGAATCCAGATGATCGAAAAG
ATTGCCAGTTTTTTCCATACAAAACCAGCTTTCAAGGCCTCATTGATGTT
TTTAAAATGCCAAAGAAGATGGTGGAAATGAAAGGTGATCGTTGGTACAT
TGGCTGATCGATTCGGTAGACCACTCATCATGGCAAGCTCAAGTTCACGG
TAACAAGACATGGACTTTACAACCACCGCCTGAATGTTATTATAAATGTG
GTGGAGGTTTCAAAGATACTGTACATGCTGGCGAAGTCAGTAAGTAAGAG
TAATTGTGACCCAGATGCAGCCAACAAATTAAGGAAATATTATCAAAGAC
CTTACTTCTTATCAGGAGAAATGGAATCGAGTCGAACGGACTGGATCTTC
ATGGGGACACCTGGGTACGGAGCTCACATACATATGGAGAAATACGCTTA
TTCTGGTCGACCCGTCATTATAACAGATGTTATGACAAACTGGACAGCTC
CGCGACATTTCAGCTTTGACTTCTTCAAGAAATTATATAAAAAGAATAGT
CCAGTTTTGAATCCAGATGATCGAAAAGATTGCCAGTTTTTTCCATACAA
AACCAGCTTTCAAGGCCTCATTGATGTTTTTAAAATGCCAAAGAAGATGG
TGGAAATGAAAGGTGATCGTTGGTACATTGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026766XLOC_026766Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043017-proteinTCONS_00043017-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043017-exon-sc0003859-1575043694:6276..7038TCONS_00043017-exon-sc0003859-1575043694:6276..7038Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1575043694:3565..3700TCONS_00043017-exon-sc0003859-1575043694:3565..3700Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1575043694:2119..2309TCONS_00043017-exon-sc0003859-1575043694:2119..2309Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1510915933:6276..7038TCONS_00043017-exon-sc0003859-1510915933:6276..7038Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1510915933:3565..3700TCONS_00043017-exon-sc0003859-1510915933:3565..3700Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1510915933:2119..2309TCONS_00043017-exon-sc0003859-1510915933:2119..2309Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1491911889:6276..7038TCONS_00043017-exon-sc0003859-1491911889:6276..7038Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1491911889:3565..3700TCONS_00043017-exon-sc0003859-1491911889:3565..3700Clytia hemisphaericaexon
TCONS_00043017-exon-sc0003859-1491911889:2119..2309TCONS_00043017-exon-sc0003859-1491911889:2119..2309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003859supercontigsc0003859:2119..7038 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.1119	7.73237	4.62785	4.34652	34.9189	26.8209	29.0966	32.3292	27.6921	27.475	17.9719	15.5161	17.7235	16.0347	18.428	14.7947	16.143	16.3536	18.683	21.2781	11.0651	9.13666	12.9345	16.6165	18.9806	20.837	11.6574	8.37378	24.9512	21.6312
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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