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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043007 ID=TCONS_00043007|Name=TCONS_00043007|organism=Clytia hemisphaerica|type=transcript|length=998bp
CCAGGAGAGTTCAATCGCATTTATAAGGAGAAGAAGGAGTTGGCACAAAT
GCTATCTTTGAAAGAACTTATCTCGACGACCTGTATGGCGCTCGCACCAT
GCACGCCTTTGTTTTTCTATGGCATTCATTTCCAAATCAGTTCGTGGAAA
ATCAATCAAGATAATTTCATTGGCATATTCCTTGCTTCAATTACGTCATA
CATGTGGATCTTCTCTTATTTCGGGCTACACAATTTGACCAAGGATCCGG
AAAGTCCTTTCTCTGATTTTAACACTATACACAAGAATAATAGTAATGCA
AGGATGAGGACAAACTATGGACAACAAAGGACATTCTAAAGGATCGACAT
CTAATGTTATTATTGGTCGCTGAAGGGTTTCTAGCTTTTCAATACTTTCA
AATGGAGCTCGAAATCAATTTGATGGCAGTTGAATATTTCCATTGGCCAA
TGTTGAAACTTGGTTTAATCACAAGTATTGCTATTATTGCGTCTACTGGA
ACTTTGTATTTGACTCAGAAGAAGCTCATGGGATNACAAGTATTGCTATT
ATTGCGTCTACTGGAACTTTGTATTTGACTCAGAAGCAGCTCATGGGATC
TGCTTTGAATATATTCTTTCTCTATGTTGTTGGTTTGGTAATTATTGGAG
TTCTAGAATCCATCATTTTATTTGGTACTGTTACAAAGTTTGATAAACCA
TTGCAGCATGCAGTTATCTTCACCACCTTATTCTTCAACATCGTTCAGGG
TTTCGGATCAACAGTTTACTGTCAATGGTTGATGTTTTCCATAACTCCTT
CACATTCCTCGAGTATCATCGAATCCCATCGATATATCATCGCCAGAGCT
TTGGCGTGCTTGGCTTTTTTTACTGCAAGTTatgtttatgatattttgaa
gTATATAATTCCAGTCTATAGTTTTATtacttatattttaattttgttat
tgttgtcgAATCGGTTTCACTATGTTGAAAGAAAAAGTATCATGTGAT Run BLAST on NCBI protein sequence of TCONS_00043007-protein >TCONS_00043007-protein ID=TCONS_00043007-protein|Name=TCONS_00043007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MGSALNIFFLYVVGLVIIGVLESIILFGTVTKFDKPLQHAVIFTTLFFNI
VQGFGSTVYCQWLMFSITPSHSSSIIESHRYIIARALACLAFFTASYVYD
ILKYIIPVYSFITYILILLLLSNRFHYVERKSIM Run BLAST on NCBI transcript from alignment at sc0003849:8099..9096 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043007 ID=TCONS_00043007|Name=TCONS_00043007|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at sc0003849:8099..9096 (Clytia hemisphaerica)
ATCACATGATACTTTTTCTTTCAACATAGTGAAACCGATTcgacaacaat
aacaaaattaaaatataagtaATAAAACTATAGACTGGAATTATATActt
caaaatatcataaacatAACTTGCAGTAAAAAAAGCCAAGCACGCCAAAG
CTCTGGCGATGATATATCGATGGGATTCGATGATACTCGAGGAATGTGAA
GGAGTTATGGAAAACATCAACCATTGACAGTAAACTGTTGATCCGAAACC
CTGAACGATGTTGAAGAATAAGGTGGTGAAGATAACTGCATGCTGCAATG
GTTTATCAAACTTTGTAACAGTACCAAATAAAATGATGGATTCTAGAACT
CCAATAATTACCAAACCAACAACATAGAGAAAGAATATATTCAAAGCAGA
TCCCATGAGCTGCTTCTGAGTCAAATACAAAGTTCCAGTAGACGCAATAA
TAGCAATACTTGTNATCCCATGAGCTTCTTCTGAGTCAAATACAAAGTTC
CAGTAGACGCAATAATAGCAATACTTGTGATTAAACCAAGTTTCAACATT
GGCCAATGGAAATATTCAACTGCCATCAAATTGATTTCGAGCTCCATTTG
AAAGTATTGAAAAGCTAGAAACCCTTCAGCGACCAATAATAACATTAGAT
GTCGATCCTTTAGAATGTCCTTTGTTGTCCATAGTTTGTCCTCATCCTTG
CATTACTATTATTCTTGTGTATAGTGTTAAAATCAGAGAAAGGACTTTCC
GGATCCTTGGTCAAATTGTGTAGCCCGAAATAAGAGAAGATCCACATGTA
TGACGTAATTGAAGCAAGGAATATGCCAATGAAATTATCTTGATTGATTT
TCCACGAACTGATTTGGAAATGAATGCCATAGAAAAACAAAGGCGTGCAT
GGTGCGAGCGCCATACAGGTCGTCGAGATAAGTTCTTTCAAAGATAGCAT
TTGTGCCAACTCCTTCTTCTCCTTATAAATGCGATTGAACTCTCCTGG Coding sequence (CDS) from alignment at sc0003849:8099..9096 >TCONS_00043007 ID=TCONS_00043007|Name=TCONS_00043007|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0003849:8099..9096 (Clytia hemisphaerica)
TCACATGATACTTTTTCTTTCAACATAGTGAAACCGATTcgacaacaata
acaaaattaaaatataagtaATAAAACTATAGACTGGAATTATATActtc
aaaatatcataaacatAACTTGCAGTAAAAAAAGCCAAGCACGCCAAAGC
TCTGGCGATGATATATCGATGGGATTCGATGATACTCGAGGAATGTGAAG
GAGTTATGGAAAACATCAACCATTGACAGTAAACTGTTGATCCGAAACCC
TGAACGATGTTGAAGAATAAGGTGGTGAAGATAACTGCATGCTGCAATGG
TTTATCAAACTTTGTAACAGTACCAAATAAAATGATGGATTCTAGAACTC
CAATAATTACCAAACCAACAACATAGAGAAAGAATATATTCAAAGCAGAT
CCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043007-exon-sc0003849-1491911889:8099..9096 | TCONS_00043007-exon-sc0003849-1491911889:8099..9096 | Clytia hemisphaerica | exon |
| TCONS_00043007-exon-sc0003849-1510915933:8099..9096 | TCONS_00043007-exon-sc0003849-1510915933:8099..9096 | Clytia hemisphaerica | exon |
| TCONS_00043007-exon-sc0003849-1575043694:8099..9096 | TCONS_00043007-exon-sc0003849-1575043694:8099..9096 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003849 | supercontig | sc0003849:8099..9096 . |
Blast
The following BLAST results are available for this feature:
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