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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043000 ID=TCONS_00043000|Name=TCONS_00043000|organism=Clytia hemisphaerica|type=transcript|length=1085bp
TCTAAAAACCTCTTGTTGGCCATGTCCTGGATTTTCACTATCAACTCAAA
ATCATGATTCTTGTTATAATATTCCATATTCTGATAGATTCCTGAGTATT
TATAATCAAGTTGGATTGAAATTAGGATGTGGAATGTGCATCATAGGTTT
TATGATGTGCTGTTTTGCAATGGTCGTTATGGTGACGAAGAGATACACAC
CTGTTGTTCGTGGATCAAACTTCCCAATAATGATACTACATGCCACATCA
ATGCTTCTGTTATTCCTGGTTATACCACTACCATATATTGgacttaaaat
gtcaaaaccgACATGTTTGTTGGAGCTGTTAGTCACGTCATTGCTGGTGT
TTTCACCTTACACATTGATCTTAAGCAAATGTCAAAATTTATTGCTTGCA
TTCAATTCAAAGTTACGTTTATCGAGAGAAACTAAACGAAAAGCTTTGGT
GAGTCAAATATTTTTAGTCCTCGTTTTAATTACAATAAACGTTGGTGCAT
TGTTGATCAGTATCTACAACCAACCGATCGAAGTAGAACTTGAACACGAT
TATAAAGagtacaaaaaaaattataggtGCAAAACTAATAAGCAAATGAA
TGTCCAAATCGTCTTTCTCATTTTATTGCACTTGATATCGACCATCCAAG
CTTATCGAGGCCGTAATCTACCGGGACCTTTCAATGAAGCAATGCCAATT
GTCTATTCATCGTTTACAAGCATCGTAACATACATGACGTACTTTCCAtt
acaatttcttcaaaaagacaaagaCATTAAAATAGTCGCTCGTGTGTTGA
TTATAACCGTCGCGAACTTGCTTNCATGTGGAATGTGCATCATAGGTTTT
ATGATGTGCTGTTTTGCAATGGTCGTTATGGTGACGAAGAGATACACACC
TGTTGTTCGTGGATCAAACTTCCCAATAATGATACTACATGCCATATCAA
TGCTTCTGTTATTCCTGGTTATACCACTACCATATATTGGACTTAAAACG
TCAAAACCANTAGCACAAAAAATGTTCAATATCTCCAACGCTCGAGTTGC
CAAAGAGATATCGAAATAAACTTTTAAGCTTTTAG Run BLAST on NCBI protein sequence of TCONS_00043000-protein >TCONS_00043000-protein ID=TCONS_00043000-protein|Name=TCONS_00043000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
LKTSCWPCPGFSLSTQNHDSCYNIPYSDRFLSIYNQVGLKLGCGMCIIGF
MMCCFAMVVMVTKRYTPVVRGSNFPIMILHATSMLLLFLVIPLPYIGLKM
SKPTCLLELLVTSLLVFSPYTLILSKCQNLLLAFNSKLRLSRETKRKALV
SQIFLVLVLITINVGALLISIYNQPIEVELEHDYKEYKKNYRCKTNKQMN
VQIVFLILLHLISTIQAYRGRNLPGPFNEAMPIVYSSFTSIVTYMTYFPL
QFLQKDKDIKIVARVLIITVANLLXCGMCIIGFMMCCFAMVVMVTKRYTP
VVRGSNFPIMILHAISMLLLFLVIPLPYIGLKTSKPXAQKMFNISNARVA
KEISK Run BLAST on NCBI transcript from alignment at sc0003842:8017..9101 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043000 ID=TCONS_00043000|Name=TCONS_00043000|organism=Clytia hemisphaerica|type=transcript|length=1085bp|location=Sequence derived from alignment at sc0003842:8017..9101 (Clytia hemisphaerica)
CTAAAAGCTTAAAAGTTTATTTCGATATCTCTTTGGCAACTCGAGCGTTG
GAGATATTGAACATTTTTTGTGCTANTGGTTTTGACGTTTTAAGTCCAAT
ATATGGTAGTGGTATAACCAGGAATAACAGAAGCATTGATATGGCATGTA
GTATCATTATTGGGAAGTTTGATCCACGAACAACAGGTGTGTATCTCTTC
GTCACCATAACGACCATTGCAAAACAGCACATCATAAAACCTATGATGCA
CATTCCACATGNAAGCAAGTTCGCGACGGTTATAATCAACACACGAGCGA
CTATTTTAATGtctttgtctttttgaagaaattgtaaTGGAAAGTACGTC
ATGTATGTTACGATGCTTGTAAACGATGAATAGACAATTGGCATTGCTTC
ATTGAAAGGTCCCGGTAGATTACGGCCTCGATAAGCTTGGATGGTCGATA
TCAAGTGCAATAAAATGAGAAAGACGATTTGGACATTCATTTGCTTATTA
GTTTTGCacctataattttttttgtactCTTTATAATCGTGTTCAAGTTC
TACTTCGATCGGTTGGTTGTAGATACTGATCAACAATGCACCAACGTTTA
TTGTAATTAAAACGAGGACTAAAAATATTTGACTCACCAAAGCTTTTCGT
TTAGTTTCTCTCGATAAACGTAACTTTGAATTGAATGCAAGCAATAAATT
TTGACATTTGCTTAAGATCAATGTGTAAGGTGAAAACACCAGCAATGACG
TGACTAACAGCTCCAACAAACATGTcggttttgacattttaagtcCAATA
TATGGTAGTGGTATAACCAGGAATAACAGAAGCATTGATGTGGCATGTAG
TATCATTATTGGGAAGTTTGATCCACGAACAACAGGTGTGTATCTCTTCG
TCACCATAACGACCATTGCAAAACAGCACATCATAAAACCTATGATGCAC
ATTCCACATCCTAATTTCAATCCAACTTGATTATAAATACTCAGGAATCT
ATCAGAATATGGAATATTATAACAAGAATCATGATTTTGAGTTGATAGTG
AAAATCCAGGACATGGCCAACAAGAGGTTTTTAGA Coding sequence (CDS) from alignment at sc0003842:8017..9101 >TCONS_00043000 ID=TCONS_00043000|Name=TCONS_00043000|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at sc0003842:8017..9101 (Clytia hemisphaerica)
TTATTTCGATATCTCTTTGGCAACTCGAGCGTTGGAGATATTGAACATTT
TTTGTGCTANTGGTTTTGACGTTTTAAGTCCAATATATGGTAGTGGTATA
ACCAGGAATAACAGAAGCATTGATATGGCATGTAGTATCATTATTGGGAA
GTTTGATCCACGAACAACAGGTGTGTATCTCTTCGTCACCATAACGACCA
TTGCAAAACAGCACATCATAAAACCTATGATGCACATTCCACATGNAAGC
AAGTTCGCGACGGTTATAATCAACACACGAGCGACTATTTTAATGtcttt
gtctttttgaagaaattgtaaTGGAAAGTACGTCATGTATGTTACGATGC
TTGTAAACGATGAATAGACAATTGGCATTGCTTCATTGAAAGGTCCCGGT
AGATTACGGCCTCGATAAGCTTGGATGGTCGATATCAAGTGCAATAAAAT
GAGAAAGACGATTTGGACATTCATTTGCTTATTAGTTTTGCacctataat
tttttttgtactCTTTATAATCGTGTTCAAGTTCTACTTCGATCGGTTGG
TTGTAGATACTGATCAACAATGCACCAACGTTTATTGTAATTAAAACGAG
GACTAAAAATATTTGACTCACCAAAGCTTTTCGTTTAGTTTCTCTCGATA
AACGTAACTTTGAATTGAATGCAAGCAATAAATTTTGACATTTGCTTAAG
ATCAATGTGTAAGGTGAAAACACCAGCAATGACGTGACTAACAGCTCCAA
CAAACATGTcggttttgacattttaagtcCAATATATGGTAGTGGTATAA
CCAGGAATAACAGAAGCATTGATGTGGCATGTAGTATCATTATTGGGAAG
TTTGATCCACGAACAACAGGTGTGTATCTCTTCGTCACCATAACGACCAT
TGCAAAACAGCACATCATAAAACCTATGATGCACATTCCACATCCTAATT
TCAATCCAACTTGATTATAAATACTCAGGAATCTATCAGAATATGGAATA
TTATAACAAGAATCATGATTTTGAGTTGATAGTGAAAATCCAGGACATGG
CCAACAAGAGGTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043000-exon-sc0003842-1491911889:8017..9101 | TCONS_00043000-exon-sc0003842-1491911889:8017..9101 | Clytia hemisphaerica | exon |
| TCONS_00043000-exon-sc0003842-1510915933:8017..9101 | TCONS_00043000-exon-sc0003842-1510915933:8017..9101 | Clytia hemisphaerica | exon |
| TCONS_00043000-exon-sc0003842-1575043694:8017..9101 | TCONS_00043000-exon-sc0003842-1575043694:8017..9101 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003842 | supercontig | sc0003842:8017..9101 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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