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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042977 ID=TCONS_00042977|Name=TCONS_00042977|organism=Clytia hemisphaerica|type=transcript|length=1180bp
ccttttttgattttatcaaacgcacaaaaacaacaaagcaGTCTTCTTGA
ATTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTG
AAGTAGCATGAAGGACTTTATTGTCAAGAATAACAGAATTTACTCCAAGC
TAAcacTAAAGTGATGTTGCGTGTACATTGGCATTgtttaaatttcaagg
aaatAAACCCTAAACTAAgAGCTACAAATCCTTTTGTCTGCACAAGTGAA
ACCAACTGATTAGCCGAGCTATCACTTGGAACTTTGACGTAAAGAAATTA
TTAAACGGTTGAGCAAGACAATATTTTGGTTGGTGATGAATAAAGATTCG
GATGCCAGCGACTTTAATATAAGCATAATGATCAAATGATTGATAAATAT
ATACTGtattgtgtcacagacccggtggtaCTTCTACATACTGTAAAAAT
CAGACAAATTGTACCCGGTTTAGAGAAAAACCCTGACTTTCACCCACCCG
GTAATCTATAATGAAGGTCTATCTCTGAAGCTGTAAACAATACCCTTtca
ccttttttataaaaacgttTTTTAGCCTTGGAATGTtcctaacttttttt
cttttaaaagcctaagaatatttttattttcatcttttaatGGGTATTTT
ATCCATTTTCTGAGAAATTGGGTCCAAAATGTTCTTACATTTTAACaaac
gaagccttatgttcttataaagaaaacatgTGAAATTACACAATCGTTTA
AGACAAGCGATCTTTCATTCCCATCGTAATTTGTACCTTAATTTTATGTC
TACtacagtacacttttttttataagagcgaGTAAATTTTTGGTGAGgct
cggatgttcttattttttttggcactttgagccttaattgttcttatttt
gttcttattttttctaaggtaaaaacaagttttggctatttacttactgt
ttagaggattttagaaaccagtgattctttttgctataactctctaactt
tagcctctccactgttcttaaattattcttattttttggcatttttgagc
ctcgttgttcttataaaaagaagtgTATGTTTTTCACCGGGTTACTGATA
CAGGGTTGTTAAAATTTTGTACTGTCGATTTAGTTGTTTGATCGGTTCGA
GGATACTTTTACTATCAATAAATTATTTAC Run BLAST on NCBI transcript from alignment at sc0003828:1949..5693- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042977 ID=TCONS_00042977|Name=TCONS_00042977|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at sc0003828:1949..5693- (Clytia hemisphaerica)
CCTTTTTTGATTTTATCAAACGCACAAAAACAACAAAGCAGTCTTCTTGA
ATTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTG
AAGTAGCATGAAGGACTTTATTGTCAAGAATAACAGAATTTACTCCAAGC
TAAGTATATTTTATTATCTTTTTACAACTTCTATTGTTTTTTTGGGATTG
AAGAAAGTTATTAAAAAATGATAAGAAAGATTTAAGACAGAAAAAAGGTA
CTATACTGTTTGAAATTTTTTATGGCTTTTGATGCATTTTTTTTCAAGGA
CGGTGTTGCTATTATTTCATTGCTGTACATTATATGCTGCATTGTATAGT
AAAGAGAAAAGCAAGCTTGAATTACAGATTTTGAACATAATTTAGATTTA
CTGTAGCTAGGATTCTGTTTTTATGTTGTGTTGTGTTTGTATTCTCTTCA
TTTTGGTTTTACACATATTTTGATTTCGTCCATATTATAGTAAAAATCTT
TTGATGTATGTAAATTTTTGAACAAATATTTCCAATTATGGCAAATGCCA
AAACTAAATTTAAGTCGATTTGTTGATTAGAGATGGATCATTATTTCTCC
CTTAGATCTTTTTGAAACACTGTAATATCTGGCATATGTGTAGTCATCAA
GCATGCCAAACACATATCAGCATTAGCCATTCAATAGAGTGTCAAAATGT
GGATATTACTTTGTTTTAAAACTAAGGGACTAGCTTATGATTGTAATCTT
TGGAACAATACAAAATCTTTGAAGTTCTTTTGAATCAGATGTGCATGTTG
TTAGTCATTTTAATGCCAAAACAACATCAACAGTCAAAACATTCTAAACC
ATGTTTAAACTGTAGAAATTATGATTCAATTGGACTTTCATTTTTTTGTT
TTGTTTTTTGTAATTACTTTCAAAGCTTCTTATTTTTTTTTAATATTGGA
AAGCATAATGCTAAAAAAAAAACCTTGTGTACTATAACTTCTGAACATTT
TTGTAAACAAAATAATTCAGTTTGAGATAAATTTGTTCTGCAAAGTTTTT
TTGTGCATGAAAGTTATTTGACGAGGTGTTTAGATTTTCTCTATTAGGCA
AGTTAAATTTTTTTAGATAAATCTTTAATTATAAGTGCAAGTTTATGCTA
ATCAGTAACCATTCAGTTAGCCATGGCCAGATATATTTTGGATTGCATTT
TCCATTATCCTGTTTAACCTGAATTTCTTGGTTGTAGACTGTTTTTGATC
TTTCTTCTATTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGGCCAAAA
AATCTGTAGCTTCACCCAACAATTGAATTAGCACTTTTTGTTATTTAATG
CTCACAATTATAAAGTATTTTATATTTATTTTTTATTTTAGCACTAAAGT
GATGTTGCGTGTACATTGGCATTGTTTAAATTTCAAGGAAATAAACCCTA
AACTAAGTAAGTCATTATTATGTCGCAACATGGTCCTTACTCAGTATCTT
GACCCTGCTTGACTCTCAAAATTTTATTTTACTTCCTCTCCAATGAAGAA
AGTGGTCAGTAAAAGACTACTATAAAACAATATAAATTCTTTCCCTGTTG
GTTTTTTGATAGAAATGTTCATCCCCACCGTGAGAATAAGTTCCACCGGG
GCTGTGAGACAGGAGTGTTATCAATAAAAACAAAGCTTGAGAAGTAAAGA
GTTAAAATACCTGGACTTTTTCATCAGTGAAATATTTTTCCCTAAAATGT
CTATCAAAAAGAAATTTCGAATCACCTCTAGATATGATTCTCAATAAGTT
TGCGCAGTCTTTAAATGTAACTTTTCAAATTGATTGCCCCTCCCAAATGT
TTTCATCAAAAGTTGCAAAAGACACCCCTGTCTCACTGCCCCTTTGGAAC
TTTTGCTTTCAGTGGGGATAACAAAATTTTTATCAAAATCCCAATGGGAA
TAGAAATTATATTGTTCCAAGGTTAAAAGATCCAGTGGGGATGGTTTTTA
GATGCAATTTTTAAACATTGAATTTAGAATGGGGATGAAATGTAAGTCAA
TTTTTATAGTGGACTGGAATCTCAGGGTAATTTTCCATCGGGAACGAAGA
CAAATTTCTTCCCAAATTTCCCAAAGGAGCTTTGACGGGGCTTTGCCCTA
TTATTAGAACACATACCGTCTGGTCCCTCAAGTGTAAGGTTTTACGATTT
AGCTGGTGAAGAACTTAAGGCGTCACTTAAACTATAAGATTTTGTTTTTG
TTCCTTTTTAGGAGCTACAAATCCTTTTGTCTGCACAAGTGAAACCAACT
GATTAGCCGAGGTAAGAATAAATATTTTTGAATTATCTTCGATTACTTGC
GTATAAGCCTATTATTCCTTTCCCCATGTATATAATAACTATATTGAGAA
ATGTACAATTTTAGATTGTTTTTCATAAGGCAAAAGGATCTAATATGGTT
AACACTTTGTTTCACTTTTCAAAGATATTTAACCATATGAACACTTGAGC
TGATTTGTAACTCTCAAATAGCGCTCCGCAACGCATACGTCATAATTATT
ACTTTTTTTGACATTTGTACGAGTTGCAATGCAGCTCAATTCTCAATTAA
AGATAAGTGCAAGTTCTTATATATCTTTTGTCAAATGATGCAATTAATGT
GCAAAAGAACTGAAAAGAAACGCAAAAGGATCGGAGCTCGTACAAACACT
TCAAGAAGAGTAATGATTATGTCAAAAGTGTGCACTATATAAACCTTAAA
AGATGCTTACCCTATTTCCCATTCAAGCTACCAAATTGACAGAATTTTGG
AACTCCTTCTGAAAATTTTATTTTGTCTTTCAGCTATCACTTGGAACTTT
GACGTAAAGAAATTATTAAACGGTTGAGCAAGACAATATTTTGGTTGGTG
ATGAATAAAGATTCGGATGCCAGCGACTTTAATATAAGCATAATGATCAA
ATGATTGATAAATATATACTGTATTGTGTCACAGACCCGGTGGTACTTCT
ACATACTGTAAAAATCAGACAAATTGTACCCGGTTTAGAGAAAAACCCTG
ACTTTCACCCACCCGGTAATCTATAATGAAGGTCTATCTCTGAAGCTGTA
AACAATACCCTTTCACCTTTTTTATAAAAACGTTTTTTAGCCTTGGAATG
TTCCTAACTTTTTTTCTTTTAAAAGCCTAAGAATATTTTTATTTTCATCT
TTTAATGGGTATTTTATCCATTTTCTGAGAAATTGGGTCCAAAATGTTCT
TACATTTTAACAAACGAAGCCTTATGTTCTTATAAAGAAAACATGTGAAA
TTACACAATCGTTTAAGACAAGCGATCTTTCATTCCCATCGTAATTTGTA
CCTTAATTTTATGTCTACTACAGTACACTTTTTTTTATAAGAGCGAGTAA
ATTTTTGGTGAGGCTCGGATGTTCTTATTTTTTTTGGCACTTTGAGCCTT
AATTGTTCTTATTTTGTTCTTATTTTTTCTAAGGTAAAAACAAGTTTTGG
CTATTTACTTACTGTTTAGAGGATTTTAGAAACCAGTGATTCTTTTTGCT
ATAACTCTCTAACTTTAGCCTCTCCACTGTTCTTAAATTATTCTTATTTT
TTGGCATTTTTGAGCCTCGTTGTTCTTATAAAAAGAAGTGTATGTTTTTC
ACCGGGTTACTGATACAGGGTTGTTAAAATTTTGTACTGTCGATTTAGTT
GTTTGATCGGTTCGAGGATACTTTTACTATCAATAAATTATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042977-exon-sc0003828-1575043694:5541..5693 | TCONS_00042977-exon-sc0003828-1575043694:5541..5693 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1575043694:4238..4302 | TCONS_00042977-exon-sc0003828-1575043694:4238..4302 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1575043694:3383..3432 | TCONS_00042977-exon-sc0003828-1575043694:3383..3432 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1575043694:1949..2860 | TCONS_00042977-exon-sc0003828-1575043694:1949..2860 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1510915933:5541..5693 | TCONS_00042977-exon-sc0003828-1510915933:5541..5693 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1510915933:4238..4302 | TCONS_00042977-exon-sc0003828-1510915933:4238..4302 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1510915933:3383..3432 | TCONS_00042977-exon-sc0003828-1510915933:3383..3432 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1510915933:1949..2860 | TCONS_00042977-exon-sc0003828-1510915933:1949..2860 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1491911889:5541..5693 | TCONS_00042977-exon-sc0003828-1491911889:5541..5693 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1491911889:4238..4302 | TCONS_00042977-exon-sc0003828-1491911889:4238..4302 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1491911889:3383..3432 | TCONS_00042977-exon-sc0003828-1491911889:3383..3432 | Clytia hemisphaerica | exon |
| TCONS_00042977-exon-sc0003828-1491911889:1949..2860 | TCONS_00042977-exon-sc0003828-1491911889:1949..2860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003828 | supercontig | sc0003828:1949..5693 - |
Blast
The following BLAST results are available for this feature:
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