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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042975 ID=TCONS_00042975|Name=TCONS_00042975|organism=Clytia hemisphaerica|type=transcript|length=1295bp
tCTGACTATAAAAGAAtgacaacatttttttttcattttcatttttacac
tgACAGAGCAGGTACACCATGGCTATGCTGCAAGGTGCAAAGTATGTTGG
CTGTTTTAGAGCATCACAAGGTAATTGTGGTATTTCTCCGAGGAACAATA
TATCTGGAACTTTCGAAATTACTGATATTGATCGACCTGTTCGCGTTGGT
TCAAATGTAGTCAATGAAAAAGAGCTCATAGAATCTAGAGCTAAAGTGAC
AATggaagaaaatgccaaaatttgTGCATATCATCGATACCAGTTGGGAA
CCTTATGGAGATCACCTAATTATTGTCTTTATCCATTGCATAAGAAACCC
GCTGTCAAAGGCTTCAGGGCTCAGACCAGCATCAATAAGTATGTACGAGT
CAATTAATGAAGAGTTTCCCTTGGAGTTTGCTATGTTTGGAAACTTATGC
CGTATCCATCGATCAATGCCAGTTGTTGTTGATACTGATTCTACCGATCT
TGATTTTACACCACCTCCAGACACTCAAGACTTCCGTTCATTCTTCGAGG
AATCGCCATTTGATAAGTCTCCCACCAAATACAAACTGACAAATTCTGTG
AATAATTTATCTGAATCGACTGTAAGATATCATAAACGAAAGTACAAGGA
TTATGTCGAATCATGCAAGAAAAAGTACAAGGAAATGGTTGCTCCAGGTC
AGGTGGACGAGTTTTCAGCCTTATTTTCTTCATCTGGCTCAGAGACTGAA
GAAGGTTGTATACCTGAAGACCTGAAATTCTTACATAGGGCATACCAAGA
AGCTGAATCCGAAAAACAGAAAACTCTTATACTGTCAGCTATTCCCAAAG
AGCAATATTCTATACAAAATATTATGAACTTGTTTTCATGCACCAAATAT
CGAGTTCAACAAGCAAGGAAATGGGCAGAAACAAATGGGGCACTAAACTT
CCAGTCAGAAAAACCCTTTACCAAGAACAAATTGAACATTGACTCTGCTG
AACATTTCGTAAATTTCTTGTTTCAAAGTAATCTCCTGCAAGATGTTGCC
TATGGAACAAGTACTTTAGAGTTTGCTGATGGTTCAAAACAACTTCTTCC
AAAGTCTGTTCTTACGTTGTCCAAGACTCATACAATCTCTGCATATAAAG
AACATTGCCGTCTTATAAACTTTACACCTCTATCTGACAGTACTCTTTGG
CAGATTTTGAAAGCTATAAAGCCTGGTCAACGCCGTGCAATGGCCGGGCT
TGATAACAACACGTCAGATGGCTTAAAAGGTTTTCAAACATTGAC Run BLAST on NCBI protein sequence of TCONS_00042975-protein >TCONS_00042975-protein ID=TCONS_00042975-protein|Name=TCONS_00042975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MPKFVHIIDTSWEPYGDHLIIVFIHCIRNPLSKASGLRPASISMYESINE
EFPLEFAMFGNLCRIHRSMPVVVDTDSTDLDFTPPPDTQDFRSFFEESPF
DKSPTKYKLTNSVNNLSESTVRYHKRKYKDYVESCKKKYKEMVAPGQVDE
FSALFSSSGSETEEGCIPEDLKFLHRAYQEAESEKQKTLILSAIPKEQYS
IQNIMNLFSCTKYRVQQARKWAETNGALNFQSEKPFTKNKLNIDSAEHFV
NFLFQSNLLQDVAYGTSTLEFADGSKQLLPKSVLTLSKTHTISAYKEHCR
LINFTPLSDSTLWQILKAIKPGQRRAMAGLDNNTSDGLKGFQTL Run BLAST on NCBI transcript from alignment at sc0003826:6827..8121 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042975 ID=TCONS_00042975|Name=TCONS_00042975|organism=Clytia hemisphaerica|type=transcript|length=1295bp|location=Sequence derived from alignment at sc0003826:6827..8121 (Clytia hemisphaerica)
GTCAATGTTTGAAAACCTTTTAAGCCATCTGACGTGTTGTTATCAAGCCC
GGCCATTGCACGGCGTTGACCAGGCTTTATAGCTTTCAAAATCTGCCAAA
GAGTACTGTCAGATAGAGGTGTAAAGTTTATAAGACGGCAATGTTCTTTA
TATGCAGAGATTGTATGAGTCTTGGACAACGTAAGAACAGACTTTGGAAG
AAGTTGTTTTGAACCATCAGCAAACTCTAAAGTACTTGTTCCATAGGCAA
CATCTTGCAGGAGATTACTTTGAAACAAGAAATTTACGAAATGTTCAGCA
GAGTCAATGTTCAATTTGTTCTTGGTAAAGGGTTTTTCTGACTGGAAGTT
TAGTGCCCCATTTGTTTCTGCCCATTTCCTTGCTTGTTGAACTCGATATT
TGGTGCATGAAAACAAGTTCATAATATTTTGTATAGAATATTGCTCTTTG
GGAATAGCTGACAGTATAAGAGTTTTCTGTTTTTCGGATTCAGCTTCTTG
GTATGCCCTATGTAAGAATTTCAGGTCTTCAGGTATACAACCTTCTTCAG
TCTCTGAGCCAGATGAAGAAAATAAGGCTGAAAACTCGTCCACCTGACCT
GGAGCAACCATTTCCTTGTACTTTTTCTTGCATGATTCGACATAATCCTT
GTACTTTCGTTTATGATATCTTACAGTCGATTCAGATAAATTATTCACAG
AATTTGTCAGTTTGTATTTGGTGGGAGACTTATCAAATGGCGATTCCTCG
AAGAATGAACGGAAGTCTTGAGTGTCTGGAGGTGGTGTAAAATCAAGATC
GGTAGAATCAGTATCAACAACAACTGGCATTGATCGATGGATACGGCATA
AGTTTCCAAACATAGCAAACTCCAAGGGAAACTCTTCATTAATTGACTCG
TACATACTTATTGATGCTGGTCTGAGCCCTGAAGCCTTTGACAGCGGGTT
TCTTATGCAATGGATAAAGACAATAATTAGGTGATCTCCATAAGGTTCCC
AACTGGTATCGATGATATGCAcaaattttggcattttcttccATTGTCAC
TTTAGCTCTAGATTCTATGAGCTCTTTTTCATTGACTACATTTGAACCAA
CGCGAACAGGTCGATCAATATCAGTAATTTCGAAAGTTCCAGATATATTG
TTCCTCGGAGAAATACCACAATTACCTTGTGATGCTCTAAAACAGCCAAC
ATACTTTGCACCTTGCAGCATAGCCATGGTGTACCTGCTCTGTcagtgta
aaaatgaaaatgaaaaaaaaatgttgtcaTTCTTTTATAGTCAGa Coding sequence (CDS) from alignment at sc0003826:6827..8121 >TCONS_00042975 ID=TCONS_00042975|Name=TCONS_00042975|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0003826:6827..8121 (Clytia hemisphaerica)
CAATGTTTGAAAACCTTTTAAGCCATCTGACGTGTTGTTATCAAGCCCGG
CCATTGCACGGCGTTGACCAGGCTTTATAGCTTTCAAAATCTGCCAAAGA
GTACTGTCAGATAGAGGTGTAAAGTTTATAAGACGGCAATGTTCTTTATA
TGCAGAGATTGTATGAGTCTTGGACAACGTAAGAACAGACTTTGGAAGAA
GTTGTTTTGAACCATCAGCAAACTCTAAAGTACTTGTTCCATAGGCAACA
TCTTGCAGGAGATTACTTTGAAACAAGAAATTTACGAAATGTTCAGCAGA
GTCAATGTTCAATTTGTTCTTGGTAAAGGGTTTTTCTGACTGGAAGTTTA
GTGCCCCATTTGTTTCTGCCCATTTCCTTGCTTGTTGAACTCGATATTTG
GTGCATGAAAACAAGTTCATAATATTTTGTATAGAATATTGCTCTTTGGG
AATAGCTGACAGTATAAGAGTTTTCTGTTTTTCGGATTCAGCTTCTTGGT
ATGCCCTATGTAAGAATTTCAGGTCTTCAGGTATACAACCTTCTTCAGTC
TCTGAGCCAGATGAAGAAAATAAGGCTGAAAACTCGTCCACCTGACCTGG
AGCAACCATTTCCTTGTACTTTTTCTTGCATGATTCGACATAATCCTTGT
ACTTTCGTTTATGATATCTTACAGTCGATTCAGATAAATTATTCACAGAA
TTTGTCAGTTTGTATTTGGTGGGAGACTTATCAAATGGCGATTCCTCGAA
GAATGAACGGAAGTCTTGAGTGTCTGGAGGTGGTGTAAAATCAAGATCGG
TAGAATCAGTATCAACAACAACTGGCATTGATCGATGGATACGGCATAAG
TTTCCAAACATAGCAAACTCCAAGGGAAACTCTTCATTAATTGACTCGTA
CATACTTATTGATGCTGGTCTGAGCCCTGAAGCCTTTGACAGCGGGTTTC
TTATGCAATGGATAAAGACAATAATTAGGTGATCTCCATAAGGTTCCCAA
CTGGTATCGATGATATGCAcaaattttggcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042975-exon-sc0003826-1491911889:6827..8121 | TCONS_00042975-exon-sc0003826-1491911889:6827..8121 | Clytia hemisphaerica | exon |
| TCONS_00042975-exon-sc0003826-1510915933:6827..8121 | TCONS_00042975-exon-sc0003826-1510915933:6827..8121 | Clytia hemisphaerica | exon |
| TCONS_00042975-exon-sc0003826-1575043694:6827..8121 | TCONS_00042975-exon-sc0003826-1575043694:6827..8121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003826 | supercontig | sc0003826:6827..8121 . |
Blast
The following BLAST results are available for this feature:
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