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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042969 ID=TCONS_00042969|Name=TCONS_00042969|organism=Clytia hemisphaerica|type=transcript|length=1753bp
CTAGCTTCACGTATGCAATTGGGTTGGCCAACTGACGGATTACGTTTCGA
CGGAGAGTTGGAATAACGAGGAAACGAAGCGTAAAGTTTTCGCTATCGAT
TGTGAGATGAGAAAGAAAATCGCTTCACACAACCCTGGAAAAACAGTGAT
GTCGTTTTGGTTGTTGAAGACAAAGAGCTCCATGTTCATTCGATTACACT
GTCAATGGTTTCTCCTGTTTTTGAAGCCATGTTTAATGGAAATTTCAAAG
AAGCACAAACAAAGAGAGTTGTTTTGGAAGGAAAACCATACGATACATTT
TTATACATGCTGAGGATGGTTTACCCTTTTGAAGACGTTTTCTTGGAGGA
TGAAATTTTGTATTGtgaaggatgttccaccgtcaaGAAAGGTCAACGAA
AAGATTTCACAAAAGAACCACCACGTTTCGGATATTATCATGGTTGCTCT
gctgaatttaaagaaaaaggtACGTCGGAGAACTGGAAAAGTGCACGGGG
AAATCCATTCTCTTTCTAATATGGAAAGATCCTCTTATTCTGAAttcaat
aaatacaaaatacgTTTTTGACACTTATTTCGGggaaaatttcctttttc
tttattGTTTTGTCGTAAAGTTATTCTTTGTAGCattcaaaatttcttga
agccttgggatgtccTTAACTTTTTAAGCTTTAAGTAATATGTTCTAAAA
AatacatattcttattttcaccattttgtcagCAATTTTGTAttatttct
aagaaattggatgttttaagAGTCcattaaagccttaaaattccCTTAGC
TTTTTCTTAATATCTTGGTCATCGAAGCATCCTGTTCTTTtgtagtttgc
tcttataaaaaacgatatCTCTTTTATTTTCACGCACGTGCAAGCATTAT
ATTCTCTAACAAACGAATACTTGATTGACACAATCACCAAGAAAATCAAC
GAAGAATTGTCACGCCAAAGCAAGCAAATGTACAACTCCTCACATGCCCT
TCATCTTCTAGAAACAGCCGAGCTTATCGAGTCAGAANACAACTCCTCAC
ATGCCCTTCATCTTCTAGAAACAGCCGAGCTTATAGAGTCAGAAGATCTT
AAAACGGCCTGCCTCGATTATATCAAACGCGATTTGTATTCATTATCAAA
TGTTGATAAATTGCTGGAAGGAAGAAGTTTCACACTTAAGACCGAGATGA
AAATCAAGTAACAGCTCTTTGAGAAACTTTTGGGAAGGTTGAAAGGTTAT
TGCACCCATTATAATTACACCAGTAGCGCAGAAGAGTGTAAGAAGGAGAT
AACGAAATTAGGTGAAGAATTTCCGTCGATGGCACTTAAAGAAGGAAGTA
CATTTTGTCAATGTCAAAGGTTTGGGATTCGGATCTCCAGAAAtggaaga
tttaaaaaaagaatatttatgTAGCttaaatattttagattttttgccTT
ATTggtgtaaatgggtttttgaaACAGTTTGTTGGCACAGCCACAGTTCC
AGAGAAACAATATCATTCGTGGTGGACATGGCTTTACTGCTTCTTATTAT
ATATTCAGTATTcattttctcatcattttttacGGACTAATATTTTGAAG
CATCGTGAATTGCATGTTGCTCTTACTACAGCGTgtcgagaaaaaaaatg
agtcaaaaaagagTTCATATAATATCTAAAGACGTATTGGTAACAAGCGT
TGAAATCGTTTTGTATTAAACGTGTAAAAGTAGGGGGTGTATGATGAAAT
ggc Run BLAST on NCBI transcript from alignment at sc0003820:14..6598+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042969 ID=TCONS_00042969|Name=TCONS_00042969|organism=Clytia hemisphaerica|type=transcript|length=6585bp|location=Sequence derived from alignment at sc0003820:14..6598+ (Clytia hemisphaerica)
CTAGCTTCACGTATGCAATTGGGTTGGCCAACTGACGGATTACGTTTCGA
CGGAGAGTTGGAATAACGAGGAAACGAAGCGTAAAGTTTTCGCTATCGAT
TGTGAGATGGTAAGAGCGAACACTTTGTAATTCGTTTATCTATCGTTTTC
TGTTTATTCGCCTTGTTACTGCAAAAGTTTTTATGTTTGGTTCAaacatt
atggaagcaaacattcGATTTCCGTAAGGGGTCGCCtttacagattcgaa
cgttttctTCGTTCTATGAATGAGTTACGTGACTTAACAAAACACGCAAA
CCTAATGGTGGAAATTACCTAGTTAGTTTAGTAATATTCTTAAGAGACGA
TATCTCTGAAAAGAATTTGATCTGTTTGGAATTGTCAGAGGAATCGTTAG
agatttttcaagaactttttgccaaaattattCCTCCAACGCTGGTTTCT
CTTTAGCTCAGTCGGTAAAGCGCTCGCATAACTCGAAAATACTTAGATGC
CTATATATAATCCTCACGCGAGGAGTTTTTAGAActaatttcttagtttt
taattGATTCAATGTAATTAATTCTGGATTATCATCAAAGCGATTATCAG
ATGAATAAAAGAATGCGATTCCGATAATCAAAGAAATAGTCCATAAAAGA
TTTCGCAGATGGGACGCGTATGACAACCATTATGATAGTCCCCTagtccg
aatagggttaagggctctgaccatagtgaatttttcataattgccgtgtt
taaaatgtgttttctgactgatgtaaccaacaaaactatggcatgttata
cattttctgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaatttgatgaagaagaaaatgaagacttttgcga
ggaagagtatttcaactttgaagagcttagtttcggcgaagaaaaaacat
tttgaaaatcttttcgcagtagatggtgtatcttttaccgaacaataaaa
atttttgcggaaaatttttgtaaatgcttttTTGTCTCGAAATATGcaaa
atagtgttttttcatcaatttttcatctggattttgcttaaaaaaacagt
cgtAACTTTTgtcacatctttttagaaaaattttccgcaaaatttaaaat
agttcaattctttgcggacagtgtaaagaaattttgaaacaaaaaagtta
attacccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaggcaattctttgttaaaagtgttaaggaacct
gaaatataacttttatgttcaaataccaaaatcaatttttggactatggt
cagagcccttaataatGGAGCACAGAAGACCCAATCTCGAAAATCGCCCT
CATAGCTCGCCCCAATTTCGTTCCAACTACCACGAGACTGGTTGAAATGA
ATAACGGACCCTGGTAGTGACGGAATGTGTGACGCCAAACAGTTAGCAAT
ACCACTTCGGAAAAATCCATTTGATTTTCGATTTACAAATTAGCtgtttt
tattgcttttttaaaATACCAATTTCGAAAATTGCCCTCATagctactct
gtaccagagtgtatctcacgtttatcgcttctcgtagtacactctgtgcg
cattgtctgtttgataaaaaagttcccgtacggagacctgcGATGAAGCT
TGATTTATAGAGaacaacacttctctcatcgtctcccctctctcaccaac
actccatcgcagcggtcggtttgaaaaaactcaaatgagaaaagacaata
acaacagacactctacggcaatgaattttaaaatcaaccgtagatactgg
gtctgtgtacagacaacccCAAAGCTCGCCCCAATTTCTTTTGAACCACT
ACAAAACTGGTTGAAAAGAATGGCTGACCCTGGTGGTAACGGAATGAGTG
ACGCTGAACAGATAGCAGAAGATAATCAGCAATACCAGCTCGGAAAAATC
CATTTGATTCTCGATTTTACAAATTAGCTGTTTTTATGGGACTTTTAAAA
GACGGTTTTTACTATtaccatttttggacctaccccggtgggctgtaggt
cctataaattaacctctgttcgtccgttcgtccgttcgttactagctttt
ctcgggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatgcattttcgctaaac
gatatattttctgactgatttttttctcctcgcattgctatctaactttc
atcatcaggtaggtccattcagcatctagcttgttaaatatcaattctta
taaaaagtagcAAAGATTTAATGtcaaaaaaggggaaaattCTTAGAAAG
CTATTATATGTGTATCTTCACATGATCAATCAAAAGAAGTCTTGCAATAT
GAATCGATTATGTGTGTATAGACATCGTTTTTAAAAGCAAGCTCATTTGT
TATGATGTTTTAAAGTAgagctttttttgttttgagttgtGTGTTTGTAA
GTTGTTTGAGTTATTTCTAAAGGCCTTGAGATTTGATTTGACGGTTCATA
CTATCTCTAATTATTTTTACACGAAATAAATTTATTAAATTGATATTATA
GTCGGCATTAAGGTTACAGAAAGAATGAGTTTATCCAATGAAGGAAAAAA
TATGCTAAAACTGATCATAGAGAAAGAAAATCGCTTCACACAACCCTGGA
AAAACAGTGATGTCGTTTTGGTTGTTGAAGACAAAGAGCTCCATGTTCAT
TCGATTACACTGTCAATGGTTTCTCCTGTTTTTGAAGCCATGTTTAATGG
AAATTTCAAAGAAGCACAAACAAAGAGAGTTGTTTTGGAAGGAAAACCAT
ACGATACATTTTTATACATGCTGAGGATGGTTTACCCTTTTGAAGACGTT
TTCTTGGGTAAGTTCTTTCAAGTTTTATAATgtgaaatgaaaaattagac
TTAAGTTTTTGCAGCCACCTTAAggggagaaattttggcgaaaagaaatt
taaatttatagttcatttgccaaaataaattctcgtcaaatttaattttc
tttcaatttagtctctgtttcttttttcagctaaataaaaatattgaaca
aaaattggtcgttcgccaaaatttcttctcgccaaatttagaaattttat
taaatcacCAAAATAAATTCCGGCATATTGCACCAACATTGGTGAATGgg
ctcattcgccaaaatttcttctcttaaggtatttctaaagttttgaaGGA
GGAAACTTTGACTAAAActgaaatctaaaaataaagtcaTTTAGCATTTT
GATTTCTACAGTAAAACGAGAGCACCATTGATTATGCCGTGAAGTTTCCA
TGGGGAACGCAAACACGCACGGGCAACGCAAAGTCGAATTatggagacat
tcgagttatggaggttcaAATACAAGAGGCTCAACTGTATAACTCTGTGA
TGAAAAAAACGATAAGGGAagcatttttcaaaactactttgtCACCATGT
CTAATTCTTACAGATATTGTCTCGACTTTTTTCAATTAATAGAGGATGAA
ATTTTGTATTGtgaaggatgttccaccgtcaaGAAAGGTCAACGAAAAGA
TTTCACAAAAGAACCACCACGTTTCGGTATgtaaaattgagtttttgttt
tcatgtgTTAAAATCACCAGCGACAGTTTGGAATTCTCAAGAACCGTATT
TTTGAACGGTGTAAATTGTCTTGTAGCGTGTTGTCTAAATTTCTTGGATT
CTATATTTTCAGGATATTATCATGGTTGCTCTgctgaatttaaagaaaaa
ggtACGTCGGAGAACTGGAAAAGTGCACGGGGAAATCCATTCTCTTTCTA
ATATGGAAAGATCCTCTTATTCTGAAttcaataaatacaaaatacgTTTT
TGACACTTATTTCGGggaaaatttcctttttctttattGTTTTGTCGTAA
AGTTATTCTTTGTAGCattcaaaatttcttgaagccttgggatgtccTTA
ACTTTTTAAGCTTTAAGTAATATGTTCTAAAAAatacatattcttatttt
caccattttgtcagCAATTTTGTAttatttctaagaaattggatgtttta
agAGTCcattaaagccttaaaattccCTTAGCTTTTTCTTAATATCTTGG
TCATCGAAGCATCCTGTTCTTTtgtagtttgctcttataaaaaacgatat
CTCTTTTATTTTCACGCACGTGCAAGCATTATATTCTCTAACAAACGAAT
ACTTGATTGACACAATCACCAAGAAAATCAACGAAGAATTGTCACGCCAA
AGCAAGCAAATGTACAACTCCTCACATGCCCTTCATCTTCTAGAAACAGC
CGAGCTTATCGAGTCAGAANACAACTCCTCACATGCCCTTCATCTTCTAG
AAACAGCCGAGCTTATAGAGTCAGAAGATCTTAAAACGGCCTGCCTCGAT
TATATCAAACGCGATTTGTATTCATTATCAAATGTTGATAAATTGCTGGA
AGGAAGAAGTTTCACACTTAAGACCGAGATGAAAATCAAGTAACAGCTCT
TTGAGAAACTTTTGGGAAGGTTGAAAGGTTATTGCACCCATTATAATTAC
ACCAGTAGCGCAGAAGAGTGTAAGAAGGAGATAACGAAATTAGGTGAAGA
ATTTCCGTCGATGGCACTTAAAGAAGGAAGTACATTTTGTCAATGTCAAA
GGTTTGGGATTCGGATCTCCAGAAAtggaagatttaaaaaaagaatattt
atgTAGCttaaatattttagattttttgccTTATTggtgtaaatgggttt
ttgaaACAGTTTGTTGGCACAGCCACAGTTCCAGAGAAACAATATCATTC
GTGGTGGACATGGCTTTACTGCTTCTTATTATATATTCAGTATTcatttt
ctcatcattttttacGGACTAATATTTTGAAGCATCGTGAATTGCATGTT
GCTCTTACTACAGCGTgtcgagaaaaaaaatgagtcaaaaaagagTTCAT
ATAATATCTAAAGACGTATTGGTAACAAGCGTTGAAATCGTTTTGTATTA
AACGTGTAAAAGTAGGGGGTGTATGATGAAATggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042969-exon-sc0003820-1491911889:14..122 | TCONS_00042969-exon-sc0003820-1491911889:14..122 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1510915933:14..122 | TCONS_00042969-exon-sc0003820-1510915933:14..122 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1575043694:14..122 | TCONS_00042969-exon-sc0003820-1575043694:14..122 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1491911889:4184..4420 | TCONS_00042969-exon-sc0003820-1491911889:4184..4420 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1510915933:4184..4420 | TCONS_00042969-exon-sc0003820-1510915933:4184..4420 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1575043694:4184..4420 | TCONS_00042969-exon-sc0003820-1575043694:4184..4420 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1491911889:5056..5139 | TCONS_00042969-exon-sc0003820-1491911889:5056..5139 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1510915933:5056..5139 | TCONS_00042969-exon-sc0003820-1510915933:5056..5139 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1575043694:5056..5139 | TCONS_00042969-exon-sc0003820-1575043694:5056..5139 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1491911889:5276..6598 | TCONS_00042969-exon-sc0003820-1491911889:5276..6598 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1510915933:5276..6598 | TCONS_00042969-exon-sc0003820-1510915933:5276..6598 | Clytia hemisphaerica | exon |
| TCONS_00042969-exon-sc0003820-1575043694:5276..6598 | TCONS_00042969-exon-sc0003820-1575043694:5276..6598 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003820 | supercontig | sc0003820:14..6598 + |
Blast
The following BLAST results are available for this feature:
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