TCONS_00042957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042957
Unique NameTCONS_00042957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042957 ID=TCONS_00042957|Name=TCONS_00042957|organism=Clytia hemisphaerica|type=transcript|length=400bp
CTTTTTTGGGAACTGGAATGATACCCCCTGTTAACCATGCAGAAGGTGGC
ACGAAATCGTTAAATGTATGGTTACAAAACTCTAGAAGGAGGTCAAGAAA
AATAGGGTCTTTCCATAGAACTGTGGGTATATTGTCTAGACCGGAAGATT
TATTgatagaaaatgattttaaagctattttaagtTCATCTTTAGTAAAA
GACTCTGTTGAAATGTGTAAAAGATCAAAGACTTGGTTCAGAGGAAGTTA
GTCAGGTCCGAGAAGTGGGGGATTTCCAAGCAGTGACTTGAAATGAGCAA
GCcaattctcttttcttttctttggagATCCTCCTTTGAGCTGGATCGAT
GGATGATCCTTGCGCCCTGACAGTTCATTGATTGTCTTCCAAGCAGCTGA
Run BLAST on NCBI

transcript from alignment at sc0003805:8600..8999

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042957 ID=TCONS_00042957|Name=TCONS_00042957|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0003805:8600..8999 (Clytia hemisphaerica)
TCAGCTGCTTGGAAGACAATCAATGAACTGTCAGGGCGCAAGGATCATCC
ATCGATCCAGCTCAAAGGAGGATctccaaagaaaagaaaagagaattgGC
TTGCTCATTTCAAGTCACTGCTTGGAAATCCCCCACTTCTCGGACCTGAC
TAACTTCCTCTGAACCAAGTCTTTGATCTTTTACACATTTCAACAGAGTC
TTTTACTAAAGATGAacttaaaatagctttaaaatcattttctatcAATA
AATCTTCCGGTCTAGACAATATACCCACAGTTCTATGGAAAGACCCTATT
TTTCTTGACCTCCTTCTAGAGTTTTGTAACCATACATTTAACGATTTCGT
GCCACCTTCTGCATGGTTAACAGGGGGTATCATTCCAGTTCCCAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026719XLOC_026719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042957-exon-sc0003805-1491911889:8600..8999TCONS_00042957-exon-sc0003805-1491911889:8600..8999Clytia hemisphaericaexon
TCONS_00042957-exon-sc0003805-1510915933:8600..8999TCONS_00042957-exon-sc0003805-1510915933:8600..8999Clytia hemisphaericaexon
TCONS_00042957-exon-sc0003805-1575043694:8600..8999TCONS_00042957-exon-sc0003805-1575043694:8600..8999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003805supercontigsc0003805:8600..8999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.742989	0	0.460517	0	0.303666	1.33637	0.286174	0.334467	0	0.49883	0.849168	0.952442	0.237393	0	0	0.476791	0.222117	0.27549	0	0.013095	0.440005	0	0.261951	0.298733	1.20154	1.5329	0	0.271819	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top