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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042954 ID=TCONS_00042954|Name=TCONS_00042954|organism=Clytia hemisphaerica|type=transcript|length=1462bpRun BLAST on NCBI protein sequence of TCONS_00042954-protein >TCONS_00042954-protein ID=TCONS_00042954-protein|Name=TCONS_00042954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp MNEIEGIKIKIEEEEIHGGDETNHEDLEIVIKLENESIRYEDDENLEPFERun BLAST on NCBI transcript from alignment at sc0003803:5428..6889 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042954 ID=TCONS_00042954|Name=TCONS_00042954|organism=Clytia hemisphaerica|type=transcript|length=1462bp|location=Sequence derived from alignment at sc0003803:5428..6889 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003803:5428..6889 >TCONS_00042954 ID=TCONS_00042954|Name=TCONS_00042954|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at sc0003803:5428..6889 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00042954 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2) HSP 1 Score: 232.646 bits (592), Expect = 3.213e-67 Identity = 143/287 (49.83%), Postives = 182/287 (63.41%), Query Frame = -1
Query: 41 DQSIRPFKCNECGEQFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSFGHKSDLTLHQRTVHEGIKAFECQECGKSFGHKYDLKRHHRIVHEGIKAFECQECGKSFGQKSALTSHKRTVHEGIKPLNCQECGKSLGLRTTLTSHQRTVHEGVKAFKCQKCGKSFGQKTNLTSHQRTVHECVKAFKCQECGKCFSTKSCLKRHQRT-VHDKAF*ASEIWKKN*EKGSLKKHKRI 895
D+ + F+CNECG+ F+++S LTRH+R+H E ++C QC K + K+NL +HQ+ H G +PF C+EC KAF K+ LT+H+RT H G K ++C CGK+F KSDLT HQRT H G K +EC ECGKSF L H R H G K FEC ECGKSF QKS LT H+RT H G KP C CGK+ ++ LT HQ +H G+K ++C +CGK+F K++LT HQRT H K F C ECGK FS KS L +H RT +K + E K K L KH R
Sbjct: 323 DKGEKHFECNECGKAFWEKSHLTRHQRVHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQR-THTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRT 602 HSP 2 Score: 213.001 bits (541), Expect = 2.582e-60 Identity = 136/282 (48.23%), Postives = 172/282 (60.99%), Query Frame = -1
Query: 44 RPFKCNECGEQFYQESTLTRHKRIH-KECKYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSFGHKSDLTLHQRTVHEGIKAFECQECGKSFGHKYDLKRHHRIVHEGIKAFECQECGKSFGQKSALTSHKRTVHEGIKPLNCQECGKSLGLRTTLTSHQRTVHEGVKAFKCQKCGKSFGQKTNLTSHQRTVHECVKAFKCQECGKCFSTKSCLKRHQRT-VHDKAF*ASEIWKKN*EKGSLKKHKR 883
+PF+C ECG+ F Q+S LT+H+R H + Y C C K + K+ L +HQ H GL+P+ C EC K FC K+ LTIH+RT H G K F C ECGK F HKS L+ H RT H G K +EC ECGK F +K L +H+R H G K +EC ECGK+F QKS LT H+R +H G KP C ECGK+ ++ L HQRT H K +KC +CGKSF K+ L H+R H K ++C ECGK FS KS L H R +K+ +E K K L KH+R
Sbjct: 467 KPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNR-THTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSDLAKHQR 741 HSP 3 Score: 207.994 bits (528), Expect = 1.881e-58 Identity = 126/255 (49.41%), Postives = 161/255 (63.14%), Query Frame = -1
Query: 122 RPFKCNECGEQFYQESTLTRHKRIHKECK-YRCKQCDKCYNSKNNLIQHQKDFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSFGHKSDLTLHQRTVHEGIKAFECQECGKSFGHKYDLKRHHRIVHEGIKAFECQECGKSFGQKSALTSHKRTVHEGIKPLNCQECGKSLGLRTTLTSHQRTVHEGVKAFKCQKCGKSFGQKTNLTSHQRTVHECVKAFKCQECGKCFSTKSCLKRHQRT 883
+P++CN CG+ FY +S LTRH+ IH K Y C +C K + K++L HQ+ H G +PF C EC K F K+ L+ H RT H G K +EC ECGK F +KS LT H RT H G K +EC ECGK+F K L +H RI H G K +EC ECGK+F KSAL H+RT H KP C ECGKS +++ L H+R H G K ++C +CGKSF K++LT H R H K+ +C ECGK F KS L +HQR+
Sbjct: 495 KPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQRI-HIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRS 742 HSP 4 Score: 201.83 bits (512), Expect = 2.490e-56 Identity = 129/285 (45.26%), Postives = 173/285 (60.70%), Query Frame = -1
Query: 41 SIRPFKCNECGEQFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSFGHKSDLTLHQRTVHEGIKAFECQECGKSFGHKYDLKRHHRIVHEGIKAFECQECGKSFGQKSALTSHKRTVHEGIKPLNCQECGKSLGLRTTLTSHQRTVHEGVKAFKCQKCGKSFGQKTNLTSHQRTVHECVKAFKCQECGKCFSTKSCLKRHQRT-VHDKAF*ASEIWKKN*EKGSLKKHKRI 889
++ + C E G F ++ L++ ++ K E + C +C K + K++L +HQ+ H G + F+C++C K F K++LT H+R+ H G K FEC ECGK+F HKS LTLHQRT H G K ++C CGK+F K DL +H R H G K +EC ECGKSF S LT H+RT H G KP C ECGKS ++ LT HQRT H G K ++C CGK+F K+ LT HQ +H +K ++C ECGK F KS L HQRT +K F E K K +L +H R
Sbjct: 297 PVKHYDCGESGNNFRRKLCLSQLQKGDKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQR-THTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRT 574 HSP 5 Score: 186.808 bits (473), Expect = 3.487e-51 Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = -1
Query: 209 RPFKCNECGEQFYQESTLTRHKRIHK-ECKYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSFGHKSDLTLHQRTVHEGIKAFECQECGKSFGHKYDLKRHHRIVHEGIKAFECQECGKSFGQKSALTSHKRTVHEGIKPLNCQECGKSLGLRTTLTSHQRTVHEGVKAFKCQKCGKSFGQKTNLTSHQRT 883
+PF C ECG+ F +STL++H R H E Y C +C K + +K+ L +H + H G +P+ C+EC K FC+K+ LT H+R +H G K +EC ECGK+F HKS L +HQRT H K ++C ECGKSF K L H R H G K +EC ECGKSF KS+LT H R H G K C ECGK ++ L HQR+ H G K ++C C K+F QK+NL HQRT
Sbjct: 551 KPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHER-KHTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT 770 HSP 6 Score: 151.369 bits (381), Expect = 5.771e-39 Identity = 88/175 (50.29%), Postives = 115/175 (65.71%), Query Frame = -1
Query: 362 RPFKCNECGEQFYQESTLTRHKRIH-KECKYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFRCDECHKAFCRKNHLTIHKRTVHEGIKAFECQECGKSFGHKSDLTLHQRTVHEGIKAFECQECGKSFGHKYDLKRHHRIVHEGIKAFECQECGKSFGQKSALTSHKRTVHEGIKP 883
+P++CNECG+ F Q+S LT+H+RIH E Y C +C K + K+ LI HQ+ H +P++C+EC K+FC K+ L +H+R H G K +EC ECGKSF HKS LT+H R H G K+ +C ECGK F K DL +H R H G K +EC C K+F QKS L H+RT H G KP
Sbjct: 607 KPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQR-SHTGEKPYECNTCRKTFSQKSNLIVHQRT-HIGEKP 776 The following BLAST results are available for this feature:
BLAST of TCONS_00042954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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