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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042949 ID=TCONS_00042949|Name=TCONS_00042949|organism=Clytia hemisphaerica|type=transcript|length=1348bp
AAATTTAGTGGAGAAATTTATAAAACTTGTTAATGAAGGTCCATTTTACA
TATGTGTTTGTTGCAATAGATGTCTTTATCGACAAACTGTTATCAAATAT
TCTGCTGATAAGTATGACATGCCAGAAGAAGATTATTATTCTGAAGTTGT
TTCTTTTGATGGTCAGTTGTACATTTGCAAGACATGCCATAACAAGCTTA
AAAAAGGAGACTTGCCTTGCCAATCTGTCAAAAACAAGCTTTCGCTTGAT
GAATTACCAAAAGAATTTCATACTCTTCGCAGACTTGAAAAGATTCTCAT
TTCGCGcagaattttattcaaaaagattGCAATAATGCCTAAAGGCCAGT
TTCCAAAACTTAAAGGGTCTATTTGTAATGTGCCAATCAATGTTGAAGAT
GTTGCTAATACGTTACCAAGAAGTACAAGTGATAACGGTCTGCTCATCGT
CAAACTGAAAAGAAAACTAGAATATAGAGGACATGTTGTTTTTGAACCAA
TCAGGCCTGATTTCATTCACTGTATACTCagttatttgaaagaaaacaat
cCTCTCTATCATGATATACAAATTGATATTAATAACATTAATGACGAGTC
AATGGTAGAAAATGCTACAAATGTTATGGAGGAAGCAAACTCTGATAGAA
ATATCTCTACCAAGGATATTATTGAACCTGTTGGAGAACAAACTGATCAT
TCTGTCTTAGATGAGCTTGAAACTGCTGCCAATCCACTTGATGCTCACCG
TTCAAGTGCAAATGAAACAACTCTTATGTCTGAAGCTCCAACCGATACAG
AAGttgataatgaaattttaaCATTGGCACCTGGTGAAGGCGAAACACCT
ATTTCAATCCTGTACGATGCTTGCTCATCCTCATTTATTTCCTAAAGGCA
AATTTGGTTACAAAGTTGAACGTGATGTTAAACTTAGTCCGTCCAAGTAT
TTTAATCAAAGGCTTTTGAATGAGAAGCAAAACTTTGCATCTGACCCAGA
CTACATTTTTTATGCCTGTTCTGTCCTGCAGCAACTTAGACTataaaatc
aaattaatataGCAATGAAAAAGGTTTCTGCTTCTAATTTAAGTGCGGGC
ATgttaagtcaaaatttcaaagaaacagtGAAGCAATTTATTGCAAATGA
TAAAGCTTTTGCTTTCATGAGCACTGTCAAAGGAACACCTGcttattgga
aaaaaattcaacaagAAGTTTTAGCCATGGTTAAACAACTAGGTCCACCA
ACTTTCTTTAATACTTTGAGTTGTGCCGATCTTAGGTGGAACGAGCTGAT
CTCTATTATTTACAAACTTAAGGGTCAAAATATTACTGCTGAATTCAT Run BLAST on NCBI protein sequence of TCONS_00042949-protein >TCONS_00042949-protein ID=TCONS_00042949-protein|Name=TCONS_00042949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
NLVEKFIKLVNEGPFYICVCCNRCLYRQTVIKYSADKYDMPEEDYYSEVV
SFDGQLYICKTCHNKLKKGDLPCQSVKNKLSLDELPKEFHTLRRLEKILI
SRRILFKKIAIMPKGQFPKLKGSICNVPINVEDVANTLPRSTSDNGLLIV
KLKRKLEYRGHVVFEPIRPDFIHCILSYLKENNPLYHDIQIDINNINDES
MVENATNVMEEANSDRNISTKDIIEPVGEQTDHSVLDELETAANPLDAHR
SSANETTLMSEAPTDTEVDNEILTLAPGEGETPISILYDACSSSFIS Run BLAST on NCBI transcript from alignment at sc0003802:7452..8799 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042949 ID=TCONS_00042949|Name=TCONS_00042949|organism=Clytia hemisphaerica|type=transcript|length=1348bp|location=Sequence derived from alignment at sc0003802:7452..8799 (Clytia hemisphaerica)
ATGAATTCAGCAGTAATATTTTGACCCTTAAGTTTGTAAATAATAGAGAT
CAGCTCGTTCCACCTAAGATCGGCACAACTCAAAGTATTAAAGAAAGTTG
GTGGACCTAGTTGTTTAACCATGGCTAAAACTTcttgttgaatttttttc
caataagCAGGTGTTCCTTTGACAGTGCTCATGAAAGCAAAAGCTTTATC
ATTTGCAATAAATTGCTTCactgtttctttgaaattttgacttaacATGC
CCGCACTTAAATTAGAAGCAGAAACCTTTTTCATTGCtatattaatttga
ttttatAGTCTAAGTTGCTGCAGGACAGAACAGGCATAAAAAATGTAGTC
TGGGTCAGATGCAAAGTTTTGCTTCTCATTCAAAAGCCTTTGATTAAAAT
ACTTGGACGGACTAAGTTTAACATCACGTTCAACTTTGTAACCAAATTTG
CCTTTAGGAAATAAATGAGGATGAGCAAGCATCGTACAGGATTGAAATAG
GTGTTTCGCCTTCACCAGGTGCCAATGttaaaatttcattatcaaCTTCT
GTATCGGTTGGAGCTTCAGACATAAGAGTTGTTTCATTTGCACTTGAACG
GTGAGCATCAAGTGGATTGGCAGCAGTTTCAAGCTCATCTAAGACAGAAT
GATCAGTTTGTTCTCCAACAGGTTCAATAATATCCTTGGTAGAGATATTT
CTATCAGAGTTTGCTTCCTCCATAACATTTGTAGCATTTTCTACCATTGA
CTCGTCATTAATGTTATTAATATCAATTTGTATATCATGATAGAGAGgat
tgttttctttcaaataactGAGTATACAGTGAATGAAATCAGGCCTGATT
GGTTCAAAAACAACATGTCCTCTATATTCTAGTTTTCTTTTCAGTTTGAC
GATGAGCAGACCGTTATCACTTGTACTTCTTGGTAACGTATTAGCAACAT
CTTCAACATTGATTGGCACATTACAAATAGACCCTTTAAGTTTTGGAAAC
TGGCCTTTAGGCATTATTGCaatctttttgaataaaattctgCGCGAAAT
GAGAATCTTTTCAAGTCTGCGAAGAGTATGAAATTCTTTTGGTAATTCAT
CAAGCGAAAGCTTGTTTTTGACAGATTGGCAAGGCAAGTCTCCTTTTTTA
AGCTTGTTATGGCATGTCTTGCAAATGTACAACTGACCATCAAAAGAAAC
AACTTCAGAATAATAATCTTCTTCTGGCATGTCATACTTATCAGCAGAAT
ATTTGATAACAGTTTGTCGATAAAGACATCTATTGCAACAAACACATATG
TAAAATGGACCTTCATTAACAAGTTTTATAAATTTCTCCACTAAATTT Coding sequence (CDS) from alignment at sc0003802:7452..8799 >TCONS_00042949 ID=TCONS_00042949|Name=TCONS_00042949|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0003802:7452..8799 (Clytia hemisphaerica)
TTAGGAAATAAATGAGGATGAGCAAGCATCGTACAGGATTGAAATAGGTG
TTTCGCCTTCACCAGGTGCCAATGttaaaatttcattatcaaCTTCTGTA
TCGGTTGGAGCTTCAGACATAAGAGTTGTTTCATTTGCACTTGAACGGTG
AGCATCAAGTGGATTGGCAGCAGTTTCAAGCTCATCTAAGACAGAATGAT
CAGTTTGTTCTCCAACAGGTTCAATAATATCCTTGGTAGAGATATTTCTA
TCAGAGTTTGCTTCCTCCATAACATTTGTAGCATTTTCTACCATTGACTC
GTCATTAATGTTATTAATATCAATTTGTATATCATGATAGAGAGgattgt
tttctttcaaataactGAGTATACAGTGAATGAAATCAGGCCTGATTGGT
TCAAAAACAACATGTCCTCTATATTCTAGTTTTCTTTTCAGTTTGACGAT
GAGCAGACCGTTATCACTTGTACTTCTTGGTAACGTATTAGCAACATCTT
CAACATTGATTGGCACATTACAAATAGACCCTTTAAGTTTTGGAAACTGG
CCTTTAGGCATTATTGCaatctttttgaataaaattctgCGCGAAATGAG
AATCTTTTCAAGTCTGCGAAGAGTATGAAATTCTTTTGGTAATTCATCAA
GCGAAAGCTTGTTTTTGACAGATTGGCAAGGCAAGTCTCCTTTTTTAAGC
TTGTTATGGCATGTCTTGCAAATGTACAACTGACCATCAAAAGAAACAAC
TTCAGAATAATAATCTTCTTCTGGCATGTCATACTTATCAGCAGAATATT
TGATAACAGTTTGTCGATAAAGACATCTATTGCAACAAACACATATGTAA
AATGGACCTTCATTAACAAGTTTTATAAATTTCTCCACTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042949-exon-sc0003802-1491911889:7452..8799 | TCONS_00042949-exon-sc0003802-1491911889:7452..8799 | Clytia hemisphaerica | exon |
| TCONS_00042949-exon-sc0003802-1510915933:7452..8799 | TCONS_00042949-exon-sc0003802-1510915933:7452..8799 | Clytia hemisphaerica | exon |
| TCONS_00042949-exon-sc0003802-1575043694:7452..8799 | TCONS_00042949-exon-sc0003802-1575043694:7452..8799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003802 | supercontig | sc0003802:7452..8799 . |
Blast
The following BLAST results are available for this feature:
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