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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042947 ID=TCONS_00042947|Name=TCONS_00042947|organism=Clytia hemisphaerica|type=transcript|length=883bp
TCCCATTTACAAAGTTCCTATTCTCAAAAAAGATCCCAATAATGgcaatg
aaaataagaaacgtGAATCCCATGATAGACCTTCTCTTATGAATGAATTA
TACGGGTTTGAATTGTGGAGAAGTTTCCAAATGGCTGAATTAACTGAAGT
TATGAGGCAAAGGGATGATATACATTTTGTTGACCTTTTGAATCAAATTC
GTGTAGGTGAACTAGATGATGAAAAAGAAGAGCTTTTGAAATCAAGATTT
ATTTCTAAGGACAGCCCAAATTACCCGGCAGACGTGACTCATATTTTTGC
AGAAAACAAACCGGTTGATGCTTACAATTTGAAGAAACTTAATGGACTAT
CAACTGAAATGCATTTGATTACCGCACAAGATGAGGTGCCAAAACATTTG
ACAAGTTCAGATATGAAGTTTATTGAAAGTGCTAAAGCAAGAGAAACAGG
TGGTCTAGCGCGTGTGCTTGAATTGAAAGTTGGTGCACGCATTTTAATTT
CCAAAAACATTGACATAACAGATAGACTGGTTAATGGTCAAGTTGGAACA
GTTATGGGTTTTAAATTTAATTCAATTAATAAGATATCAGGTATCTATGT
TAAACTTGATGATACAAAAGCAGGTAAAAAAGGATCAAATTTAGATCAAG
TATTTAGAGAAAACAGTTGGACTTTGATTGAAAGAGCAGAATGTACCTTC
AACACAAGGAAAAAAAAGAATAGAAGAAGTAAAGAAAAACCTTTAATGGT
CAGAAGAACACAATTTCCTCTAGCNTGGATGCTGCAAATGAAGACCTTGC
TGATGTGCTCTCGTCATACAAACTGATAGTGAATGAACCTACTCATTTGG
CAGGTGGTCTTCTTGATCATGTGTATTTGAAAA Run BLAST on NCBI protein sequence of TCONS_00042947-protein >TCONS_00042947-protein ID=TCONS_00042947-protein|Name=TCONS_00042947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
PIYKVPILKKDPNNGNENKKRESHDRPSLMNELYGFELWRSFQMAELTEV
MRQRDDIHFVDLLNQIRVGELDDEKEELLKSRFISKDSPNYPADVTHIFA
ENKPVDAYNLKKLNGLSTEMHLITAQDEVPKHLTSSDMKFIESAKARETG
GLARVLELKVGARILISKNIDITDRLVNGQVGTVMGFKFNSINKISGIYV
KLDDTKAGKKGSNLDQVFRENSWTLIERAECTFNTRKKKNRRSKEKPLMV
RRTQFPLXWMLQMKTLLMCSRHTN Run BLAST on NCBI transcript from alignment at sc0003802:4158..5040 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042947 ID=TCONS_00042947|Name=TCONS_00042947|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0003802:4158..5040 (Clytia hemisphaerica)
TTTTCAAATACACATGATCAAGAAGACCACCTGCCAAATGAGTAGGTTCA
TTCACTATCAGTTTGTATGACGAGAGCACATCAGCAAGGTCTTCATTTGC
AGCATCCANGCTAGAGGAAATTGTGTTCTTCTGACCATTAAAGGTTTTTC
TTTACTTCTTCTATTCTTTTTTTTCCTTGTGTTGAAGGTACATTCTGCTC
TTTCAATCAAAGTCCAACTGTTTTCTCTAAATACTTGATCTAAATTTGAT
CCTTTTTTACCTGCTTTTGTATCATCAAGTTTAACATAGATACCTGATAT
CTTATTAATTGAATTAAATTTAAAACCCATAACTGTTCCAACTTGACCAT
TAACCAGTCTATCTGTTATGTCAATGTTTTTGGAAATTAAAATGCGTGCA
CCAACTTTCAATTCAAGCACACGCGCTAGACCACCTGTTTCTCTTGCTTT
AGCACTTTCAATAAACTTCATATCTGAACTTGTCAAATGTTTTGGCACCT
CATCTTGTGCGGTAATCAAATGCATTTCAGTTGATAGTCCATTAAGTTTC
TTCAAATTGTAAGCATCAACCGGTTTGTTTTCTGCAAAAATATGAGTCAC
GTCTGCCGGGTAATTTGGGCTGTCCTTAGAAATAAATCTTGATTTCAAAA
GCTCTTCTTTTTCATCATCTAGTTCACCTACACGAATTTGATTCAAAAGG
TCAACAAAATGTATATCATCCCTTTGCCTCATAACTTCAGTTAATTCAGC
CATTTGGAAACTTCTCCACAATTCAAACCCGTATAATTCATTCATAAGAG
AAGGTCTATCATGGGATTCacgtttcttattttcattgcCATTATTGGGA
TCTTTTTTGAGAATAGGAACTTTGTAAATGGGA Coding sequence (CDS) from alignment at sc0003802:4158..5040 >TCONS_00042947 ID=TCONS_00042947|Name=TCONS_00042947|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0003802:4158..5040 (Clytia hemisphaerica)
TCAGTTTGTATGACGAGAGCACATCAGCAAGGTCTTCATTTGCAGCATCC
ANGCTAGAGGAAATTGTGTTCTTCTGACCATTAAAGGTTTTTCTTTACTT
CTTCTATTCTTTTTTTTCCTTGTGTTGAAGGTACATTCTGCTCTTTCAAT
CAAAGTCCAACTGTTTTCTCTAAATACTTGATCTAAATTTGATCCTTTTT
TACCTGCTTTTGTATCATCAAGTTTAACATAGATACCTGATATCTTATTA
ATTGAATTAAATTTAAAACCCATAACTGTTCCAACTTGACCATTAACCAG
TCTATCTGTTATGTCAATGTTTTTGGAAATTAAAATGCGTGCACCAACTT
TCAATTCAAGCACACGCGCTAGACCACCTGTTTCTCTTGCTTTAGCACTT
TCAATAAACTTCATATCTGAACTTGTCAAATGTTTTGGCACCTCATCTTG
TGCGGTAATCAAATGCATTTCAGTTGATAGTCCATTAAGTTTCTTCAAAT
TGTAAGCATCAACCGGTTTGTTTTCTGCAAAAATATGAGTCACGTCTGCC
GGGTAATTTGGGCTGTCCTTAGAAATAAATCTTGATTTCAAAAGCTCTTC
TTTTTCATCATCTAGTTCACCTACACGAATTTGATTCAAAAGGTCAACAA
AATGTATATCATCCCTTTGCCTCATAACTTCAGTTAATTCAGCCATTTGG
AAACTTCTCCACAATTCAAACCCGTATAATTCATTCATAAGAGAAGGTCT
ATCATGGGATTCacgtttcttattttcattgcCATTATTGGGATCTTTTT
TGAGAATAGGAACTTTGTAAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042947-exon-sc0003802-1491911889:4158..5040 | TCONS_00042947-exon-sc0003802-1491911889:4158..5040 | Clytia hemisphaerica | exon |
| TCONS_00042947-exon-sc0003802-1510915933:4158..5040 | TCONS_00042947-exon-sc0003802-1510915933:4158..5040 | Clytia hemisphaerica | exon |
| TCONS_00042947-exon-sc0003802-1575043694:4158..5040 | TCONS_00042947-exon-sc0003802-1575043694:4158..5040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003802 | supercontig | sc0003802:4158..5040 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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