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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042937 ID=TCONS_00042937|Name=TCONS_00042937|organism=Clytia hemisphaerica|type=transcript|length=402bp
TTCACTTTTAGACCCTACGAATGGACAATCTCTACAGCAGTACTGTTTTT
CTTTGCGAAACAACGGAAGACAGTCGGTACGTTAGATGTGATTTCAAACA
TTGCACCAAACATTCCCTCAATAACTATCCAGATCAAATACCAGTATCAT
ATTGGCTTTTAAACACACCGaaaaactgtcaatcaattGAGAAACACGTG
ACCCAAGAAATTCAACATTTTGTTGATGGTACTGGTGAAACCAGTGATCC
TCGAGAAGAATTCCAGTTGAACTCTCACTTGCTACATAATCCAAAATTGC
TTGCTCCATTTACAAAGattttgatAGTATTCAACATAAGGGCACCACAA
TCGAATTATGGAAACTGGATCAACAAGTTCTTAGAGTTAACACTGAAGGG
TA Run BLAST on NCBI protein sequence of TCONS_00042937-protein >TCONS_00042937-protein ID=TCONS_00042937-protein|Name=TCONS_00042937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MDNLYSSTVFLCETTEDSRYVRCDFKHCTKHSLNNYPDQIPVSYWLLNTP
KNCQSIEKHVTQEIQHFVDGTGETSDPREEFQLNSHLLHNPKLLAPFTKI
LIVFNIRAPQSNYGNWINKFLELTLKG Run BLAST on NCBI transcript from alignment at sc0003795:258..1845- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042937 ID=TCONS_00042937|Name=TCONS_00042937|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at sc0003795:258..1845- (Clytia hemisphaerica)
TTCACTTTTAGACCCTACGAATGGACAATCTCTACAGCAGTACTGTTTTT
CTTTGCGAAACAACGGAAGACAGTCGGTACGTTAGATGTGATTTCAAACA
TTGCACCAAACATTCCCTCAATAACTATCCAGATCAAATACCAGGTAAAA
AATGTATATCATATGTATGTGAAGAAATAAGAATTTCTGTCCAACTATCT
TCTTTCAGGAGATTTGGGTGGCACAGCAGTTTCGTCCTTTTCAGGAATCG
TCAGCACTGCATACTCTATATACAACACCATTCCGGTCCTTTTTACGCTG
GCCAATTTTACACCGTCCTCTTATTACGAAAAATAATTGCCGTAATTTAA
TCCCTTAAGCCGTCCCTTTTTACGCCAAAGTGACGGAATACACGTTGTTG
TTTTTTAAGAAACTAGTTTTACCAAACAGCCTCGATGTTTCTTAAGAAAT
CGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAAACTTTTTGACA
TAATCAAGCCTCATGGAAGGCTGGATTGGAAGGTTCTTAAAAAACGAATT
TAAAAATGTTATTTTCTCATTCTCAGCCTCAACATGTTTCTTAGATGTTT
CTTAGTTTTTAGGCATTCTGAGCCTCTTGTTTCTTAAAAGTGTGTTTCTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAAAAAAAAACGTGTAATAACGCAAAAAAGGGTCA
TCGTTAAAAGGGCCAATGAAGTAAATCATGATAAAAGATTATACCATGAG
GGCAAATTTTAAACCGATTTTTATCAAGTAAAATACCTCACAATTTTTTA
TCATGAGAAAAAAGGTATTTGAAGTCCAAAGTGTCAAATAATTTAAAAAT
AATCAGGCCTGGAGCAAAGAGCTTGTCTCCATCAATGTTAACTGACATTA
ATGAAAACAGCGTCAAAAGTTCTTCCTTCCCAACTGAATTCCGTCTCTAA
ATTCTGCAATTCCATTTTTCGTCTCATAAGAAAGAAGTCTTGCTGTGACC
GCTGCAAAAAGAGAATGCATTTAATTCTTATCAATTTGTTTCAAGTATCA
TATTGGCTTTTAAACACACCGAAAAACTGTCAATCAATTGAGAAACACGT
GACCCAAGAAATTCAACATTTTGTTGATGGTACTGGTGAAACCAGTGATC
CTCGAGAAGAATTCCAGTTGAACTCTCACTTGCTACATAATCCAAAATTG
CTTGCTCCATTTACAAAGGTAACCACGCCCTTTTCTTATTTTGAACTGGA
TTTCTTGATCTGGGGAACGATAGAATTTCTACCCTCTTTGGATTTAGATA
GAAATTCTCATACCCACTGTCGGGAAGAGTTTCCCCGGGGCTGTGAGACA
AGGGTACTATACGAACAAATTGCACTCTACAAGCTTTTAAATTCATGCTT
TAAAGCTTTAACCAACGAAGTCTTGAATTCATAATCTTGTTGTCATTTTG
TAGATTTTGATAGTATTCAACATAAGGGCACCACAATCGAATTATGGAAA
CTGGATCAACAAGTTCTTAGAGTTAACACTGAAGGGTA Coding sequence (CDS) from alignment at sc0003795:258..1845- >TCONS_00042937 ID=TCONS_00042937|Name=TCONS_00042937|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at sc0003795:258..1845- (Clytia hemisphaerica)
ATTTTGATAGTATTCAACATAAGGGCACCACAATCGAATTATGGAAACTG
GATCAACAAGTTCTTAGAGTTAACACTGAAGGGTTATCATATTGGCTTTT
AAACACACCGAAAAACTGTCAATCAATTGAGAAACACGTGACCCAAGAAA
TTCAACATTTTGTTGATGGTACTGGTGAAACCAGTGATCCTCGAGAAGAA
TTCCAGTTGAACTCTCACTTGCTACATAATCCAAAATTGCTTGCTCCATT
TACAAAGATGGACAATCTCTACAGCAGTACTGTTTTTCTTTGCGAAACAA
CGGAAGACAGTCGGTACGTTAGATGTGATTTCAAACATTGCACCAAACAT
TCCCTCAATAACTATCCAGATCAAATACCAGATTTTGATAGTATTCAACA
TAAGGGCACCACAATCGAATTATGGAAACTGGATCAACAAGTTCTTAGAG
TTAACACTGAAGGGTTATCATATTGGCTTTTAAACACACCGAAAAACTGT
CAATCAATTGAGAAACACGTGACCCAAGAAATTCAACATTTTGTTGATGG
TACTGGTGAAACCAGTGATCCTCGAGAAGAATTCCAGTTGAACTCTCACT
TGCTACATAATCCAAAATTGCTTGCTCCATTTACAAAGATGGACAATCTC
TACAGCAGTACTGTTTTTCTTTGCGAAACAACGGAAGACAGTCGGTACGT
TAGATGTGATTTCAAACATTGCACCAAACATTCCCTCAATAACTATCCAG
ATCAAATACCAGATTTTGATAGTATTCAACATAAGGGCACCACAATCGAA
TTATGGAAACTGGATCAACAAGTTCTTAGAGTTAACACTGAAGGGTTATC
ATATTGGCTTTTAAACACACCGAAAAACTGTCAATCAATTGAGAAACACG
TGACCCAAGAAATTCAACATTTTGTTGATGGTACTGGTGAAACCAGTGAT
CCTCGAGAAGAATTCCAGTTGAACTCTCACTTGCTACATAATCCAAAATT
GCTTGCTCCATTTACAAAGATGGACAATCTCTACAGCAGTACTGTTTTTC
TTTGCGAAACAACGGAAGACAGTCGGTACGTTAGATGTGATTTCAAACAT
TGCACCAAACATTCCCTCAATAACTATCCAGATCAAATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042937-exon-sc0003795-1575043694:1702..1845 | TCONS_00042937-exon-sc0003795-1575043694:1702..1845 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1575043694:578..750 | TCONS_00042937-exon-sc0003795-1575043694:578..750 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1575043694:258..342 | TCONS_00042937-exon-sc0003795-1575043694:258..342 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1510915933:1702..1845 | TCONS_00042937-exon-sc0003795-1510915933:1702..1845 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1510915933:578..750 | TCONS_00042937-exon-sc0003795-1510915933:578..750 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1510915933:258..342 | TCONS_00042937-exon-sc0003795-1510915933:258..342 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1491911889:1702..1845 | TCONS_00042937-exon-sc0003795-1491911889:1702..1845 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1491911889:578..750 | TCONS_00042937-exon-sc0003795-1491911889:578..750 | Clytia hemisphaerica | exon |
| TCONS_00042937-exon-sc0003795-1491911889:258..342 | TCONS_00042937-exon-sc0003795-1491911889:258..342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003795 | supercontig | sc0003795:258..1845 - |
Blast
The following BLAST results are available for this feature:
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