TCONS_00042936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042936
Unique NameTCONS_00042936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042936 ID=TCONS_00042936|Name=TCONS_00042936|organism=Clytia hemisphaerica|type=transcript|length=613bp
CTATCGTATCCAGGGAAAATTACATTCCGTTTTGCTTCTGATTGATGTGG
CGATTCCTGAGGTGGCTTAGCCTTTTTGAGGCAAGAAGTTAGATCTTTAC
TATGAAAGTATCTTGGTTTTGAAGGAGATTGGTTTCCTGAATTTGATGAA
AGCCTccttttggaagaattttcCTTTGTTGAGTCATTAATAGGTGATTC
ATTGGAATAATGATGCAATTTTTCCACGAAAGTTTTCATTGCAATTCTCA
ATATGATGCTTCAATGTGTCCATAaactttttcttatcttttgaATAGAG
TTTTATAAAGCAATTTGCTGCAAAGTTTGAACAATTTCTAACACCAAATA
GGATTTCTACATAGTTTTGCATGGCATTATCGAAGTCCTCAATTCTTTGA
GATCGCTCTTCCTCCTCAACATTTTCTCCATTACTTTGCTGAGgtttaaa
caatgaaaaaaagagTTTAAACAATGCCTGGTCAGGCGTTTTTATAAAGA
CATATCTTATCAACGCAAAGGAATTTAgagtaattttctttttttgaggt
CTGGTACTTGGTCGCATATTTCATCTTGGTCGCTATTTTTGTCTTGCTCG
GTGTTTTCGTCTT
Run BLAST on NCBI

protein sequence of TCONS_00042936-protein

>TCONS_00042936-protein ID=TCONS_00042936-protein|Name=TCONS_00042936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MRPSTRPQKKKITLNSFALIRYVFIKTPDQALFKLFFSLFKPQQSNGENV
EEEERSQRIEDFDNAMQNYVEILFGVRNCSNFAANCFIKLYSKDKKKFMD
TLKHHIENCNENFRGKIASLFQ
Run BLAST on NCBI

transcript from alignment at sc0003794:1822..2434

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042936 ID=TCONS_00042936|Name=TCONS_00042936|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0003794:1822..2434 (Clytia hemisphaerica)
AAGACGAAAACACCGAGCAAGACAAAAATAGCGACCAAGATGAAATATGC
GACCAAGTACCAGacctcaaaaaaagaaaattactcTAAATTCCTTTGCG
TTGATAAGATATGTCTTTATAAAAACGCCTGACCAGGCATTGTTTAAAct
ctttttttcattgtttaaacCTCAGCAAAGTAATGGAGAAAATGTTGAGG
AGGAAGAGCGATCTCAAAGAATTGAGGACTTCGATAATGCCATGCAAAAC
TATGTAGAAATCCTATTTGGTGTTAGAAATTGTTCAAACTTTGCAGCAAA
TTGCTTTATAAAACTCTATtcaaaagataagaaaaagttTATGGACACAT
TGAAGCATCATATTGAGAATTGCAATGAAAACTTTCGTGGAAAAATTGCA
TCATTATTCCAATGAATCACCTATTAATGACTCAACAAAGgaaaattctt
ccaaaaggAGGCTTTCATCAAATTCAGGAAACCAATCTCCTTCAAAACCA
AGATACTTTCATAGTAAAGATCTAACTTCTTGCCTCAAAAAGGCTAAGCC
ACCTCAGGAATCGCCACATCAATCAGAAGCAAAACGGAATGTAATTTTCC
CTGGATACGATAG

Coding sequence (CDS) from alignment at sc0003794:1822..2434

>TCONS_00042936 ID=TCONS_00042936|Name=TCONS_00042936|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0003794:1822..2434 (Clytia hemisphaerica)
ATGCGACCAAGTACCAGacctcaaaaaaagaaaattactcTAAATTCCTT
TGCGTTGATAAGATATGTCTTTATAAAAACGCCTGACCAGGCATTGTTTA
AActctttttttcattgtttaaacCTCAGCAAAGTAATGGAGAAAATGTT
GAGGAGGAAGAGCGATCTCAAAGAATTGAGGACTTCGATAATGCCATGCA
AAACTATGTAGAAATCCTATTTGGTGTTAGAAATTGTTCAAACTTTGCAG
CAAATTGCTTTATAAAACTCTATtcaaaagataagaaaaagttTATGGAC
ACATTGAAGCATCATATTGAGAATTGCAATGAAAACTTTCGTGGAAAAAT
TGCATCATTATTCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026702XLOC_026702Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042936-proteinTCONS_00042936-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042936-exon-sc0003794-1491911889:1822..2434TCONS_00042936-exon-sc0003794-1491911889:1822..2434Clytia hemisphaericaexon
TCONS_00042936-exon-sc0003794-1510915933:1822..2434TCONS_00042936-exon-sc0003794-1510915933:1822..2434Clytia hemisphaericaexon
TCONS_00042936-exon-sc0003794-1575043694:1822..2434TCONS_00042936-exon-sc0003794-1575043694:1822..2434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003794supercontigsc0003794:1822..2434 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.5082	57.0601	33.1606	27.9858	49.4897	36.4462	35.4152	31.7498	16.9494	15.3256	11.8973	11.4027	6.39739	4.92109	8.084	9.44282	18.4618	12.5835	2.78932	4.06185	14.0651	12.3628	34.1247	32.9901	14.5616	17.1715	11.7445	7.93438	18.0962	19.3629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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