TCONS_00042934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042934
Unique NameTCONS_00042934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042934 ID=TCONS_00042934|Name=TCONS_00042934|organism=Clytia hemisphaerica|type=transcript|length=253bp
TTACTGTATTCACAAGAGGCCATTTGTAGAAAATTGGATCTCCATAGGCT
GGACTTTGCAACTTTAAAACTCTTGGCTCTGCCATTTTTCTAGATGATCC
TGTTTGTTCAAAGTATGATTagaaattaggaaaaaaatTCCTGTAGAGAA
GTCCCACTCAggccgccatcttgaaaaattattgttttgttCGAGCAAAC
AGTTTATCGCGAAAAAATTCCGTCGGCTTGGTGGTCGGAAAATCGGAAAT
GAC
Run BLAST on NCBI

transcript from alignment at sc0003792:8517..8769

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042934 ID=TCONS_00042934|Name=TCONS_00042934|organism=Clytia hemisphaerica|type=transcript|length=253bp|location=Sequence derived from alignment at sc0003792:8517..8769 (Clytia hemisphaerica)
GTCATTTCCGATTTTCCGACCACCAAGCCGACGGAATTTTTTCGCGATAA
ACTGTTTGCTCGaacaaaacaataatttttcaagatggcggccTGAGTGG
GACTTCTCTACAGGAatttttttcctaatttctAATCATACTTTGAACAA
ACAGGATCATCTAGAAAAATGGCAGAGCCAAGAGTTTTAAAGTTGCAAAG
TCCAGCCTATGGAGATCCAATTTTCTACAAATGGCCTCTTGTGAATACAG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026700XLOC_026700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042934-exon-sc0003792-1491911889:8517..8769TCONS_00042934-exon-sc0003792-1491911889:8517..8769Clytia hemisphaericaexon
TCONS_00042934-exon-sc0003792-1510915933:8517..8769TCONS_00042934-exon-sc0003792-1510915933:8517..8769Clytia hemisphaericaexon
TCONS_00042934-exon-sc0003792-1575043694:8517..8769TCONS_00042934-exon-sc0003792-1575043694:8517..8769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003792supercontigsc0003792:8517..8769 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.19384	1.42623	0	0	4.93086	14.0271	7.5214	10.5622	4.31365	4.57984	2.22265	0.974056	1.9454	1.51524	1.66098	1.33686	2.74484	0.562675	0	1.62692	1.41408	5.17306	4.19235	4.57375	19.6286	19.6202	0	3.21042	5.68164	2.48087
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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