TCONS_00042931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042931
Unique NameTCONS_00042931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042931 ID=TCONS_00042931|Name=TCONS_00042931|organism=Clytia hemisphaerica|type=transcript|length=325bp
CCCAGACCATATCGAACACGCCTACTCTGAAGAAATGTCCAAAAAGTCTT
TCATTGCCAGTCTACCAATCATTGATGCCGACGAGAAAAAGTATCAAGAC
TGTGTAAAGATTCTTCGAACATATGAAGGTTGGATTGCTGAAATCTATAA
TAAAGCGGGTCTCCTTGAGGAAATGCCATCCCAAGATCCTGATGTGCCTA
ACATTCAAGATTCTTCAGCCAACACTGGACAGACCTTTGGCCATACAATC
TTTTCAAACGATGACCCTATGAAGGAAATGAAAGTGATGTTTGGTGGTGA
TCAGATGACCAGAGTCAGATTTGCT
Run BLAST on NCBI

protein sequence of TCONS_00042931-protein

>TCONS_00042931-protein ID=TCONS_00042931-protein|Name=TCONS_00042931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
PDHIEHAYSEEMSKKSFIASLPIIDADEKKYQDCVKILRTYEGWIAEIYN
KAGLLEEMPSQDPDVPNIQDSSANTGQTFGHTIFSNDDPMKEMKVMFGGD
QMTRVRFA
Run BLAST on NCBI

transcript from alignment at sc0003789:7275..7827+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042931 ID=TCONS_00042931|Name=TCONS_00042931|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0003789:7275..7827+ (Clytia hemisphaerica)
CCCAGACCATATCGAACACGCCTACTCTGAAGAAATGTCCAAAAAGTCTT
TCATTGCCAGTCTACCAATCATTGATGCCGACGAGAAAAAGTATCAAGAC
TGTGTAAAGGTTAAATTTATTTCATGAGATTATAACTTTTTCTACTGCTA
TTCATcccattttttctttgaatacctgaaaatcttttaattaagataag
aaaaatttgagaagTCATATTTTAAGGAAGTAATTTATTTTTCTGAGAAT
TCAAACgagaatttttaaaatcaagtaGTTTTCCTTCAAAATCATGGAAA
AGTAGAGGTCACTGAGAAACTGTTCATTTTTTCTTAGATTCTTCGAACAT
ATGAAGGTTGGATTGCTGAAATCTATAATAAAGCGGGTCTCCTTGAGGAA
ATGCCATCCCAAGATCCTGATGTGCCTAACATTCAAGATTCTTCAGCCAA
CACTGGACAGACCTTTGGCCATACAATCTTTTCAAACGATGACCCTATGA
AGGAAATGAAAGTGATGTTTGGTGGTGATCAGATGACCAGAGTCAGATTT
GCT

Coding sequence (CDS) from alignment at sc0003789:7275..7827+

>TCONS_00042931 ID=TCONS_00042931|Name=TCONS_00042931|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0003789:7275..7827+ (Clytia hemisphaerica)
CCAGACCATATCGAACACGCCTACTCTGAAGAAATGTCCAAAAAGTCTTT
CATTGCCAGTCTACCAATCATTGATGCCGACGAGAAAAAGTATCAAGACT
GTGTAAAGATTCTTCGAACATATGAAGGTTGGATTGCTGAAATCTATAAT
AAAGCGGGTCTCCTTGAGGAAATGCCATCCCAAGATCCTGATGTGCCTAA
CATTCAAGATTCTTCAGCCAACACTGGACAGACCTTTGGCCATACAATCT
TTTCAAACGATGACCCTATGAAGGAAATGAAAGTGATGTTTGGTGGTGAT
CAGATGACCAGAGTCAGATTTGCTCCAGACCATATCGAACACGCCTACTC
TGAAGAAATGTCCAAAAAGTCTTTCATTGCCAGTCTACCAATCATTGATG
CCGACGAGAAAAAGTATCAAGACTGTGTAAAGATTCTTCGAACATATGAA
GGTTGGATTGCTGAAATCTATAATAAAGCGGGTCTCCTTGAGGAAATGCC
ATCCCAAGATCCTGATGTGCCTAACATTCAAGATTCTTCAGCCAACACTG
GACAGACCTTTGGCCATACAATCTTTTCAAACGATGACCCTATGAAGGAA
ATGAAAGTGATGTTTGGTGGTGATCAGATGACCAGAGTCAGATTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026697XLOC_026697Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042931-proteinTCONS_00042931-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042931-exon-sc0003789-1491911889:7275..7383TCONS_00042931-exon-sc0003789-1491911889:7275..7383Clytia hemisphaericaexon
TCONS_00042931-exon-sc0003789-1510915933:7275..7383TCONS_00042931-exon-sc0003789-1510915933:7275..7383Clytia hemisphaericaexon
TCONS_00042931-exon-sc0003789-1575043694:7275..7383TCONS_00042931-exon-sc0003789-1575043694:7275..7383Clytia hemisphaericaexon
TCONS_00042931-exon-sc0003789-1491911889:7612..7827TCONS_00042931-exon-sc0003789-1491911889:7612..7827Clytia hemisphaericaexon
TCONS_00042931-exon-sc0003789-1510915933:7612..7827TCONS_00042931-exon-sc0003789-1510915933:7612..7827Clytia hemisphaericaexon
TCONS_00042931-exon-sc0003789-1575043694:7612..7827TCONS_00042931-exon-sc0003789-1575043694:7612..7827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003789supercontigsc0003789:7275..7827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.305824	0	0	0	1.23726	0.3259	1.17955	0	1.80398	1.59609	0.61968	2.03677	2.03394	0.844905	1.2156	2.23632	1.1479	2.58844	2.27568	6.80382	1.18275	0.865356	1.05195	1.27517	0	0	5.03214	3.13275	6.10993	5.18754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top