TCONS_00042930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042930
Unique NameTCONS_00042930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042930 ID=TCONS_00042930|Name=TCONS_00042930|organism=Clytia hemisphaerica|type=transcript|length=290bp
TAAAACCGGAAAACAGGACAACCAACAAGAGCATCCAAACAAATTCAAAG
AAGATGGTATCTCAAAAAAGAAAAACAACGCAGAGCTTGATAACCAATAT
CGCAAAAAGCCCAACCACGATAGCTCAAGGATACTCGACTCTGAAGattg
CTTCATTGAGTGCAGCGAAAAACAGGGTAAGTATTTTCATATTCAAATAC
TGGGTAGGGCATGAGCAGAAACCAAAATAATAACAGACACAAATTGGTAt
ctaaattatttaatttttctttatctgATGATTAAGTAAT
Run BLAST on NCBI

transcript from alignment at sc0003789:3..617+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042930 ID=TCONS_00042930|Name=TCONS_00042930|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0003789:3..617+ (Clytia hemisphaerica)
TAAAACCGGAAAACAGGACAACCAACAAGAGCATCCAAACAAATTCAAAG
AAGATGGTATCTCAAAAAAGGTGAGAAGAACCTCTTACAGCGATTAGGCT
AATCAAATTCCGTTTACTAAGTAGTAAAAATATTGTTTACTTTCAGAAAA
ACAACGCAGAGCTTGATAACCAATATCGCAAAAAGCCCAACCACGATAGC
TCAAGGATACTCGACTCTGAAGGTACGTAAAGCTACATATTTAGGTAGTT
TTTGAGCGAGTTTACTTATTGCACAATTTTGCTGTAGAACAACTCTATGA
TTTATAGGttgatttattttcataaaaattctttttttacagatTGCTTC
ATTGAGTGCAGCGAAAAACAGGGTAAGTATTTTCATATTCAAATACCGGG
TAGGGCATGAGCAGAAACCAAAATAATAACAGACACAAATTGNcattttc
ataaaaattttttttttacagattgCTTCATTGAGTGCAGCGAAAAACAG
GGTAAGTATTTTCATATTCAAATACTGGGTAGGGCATGAGCAGAAACCAA
AATAATAACAGACACAAATTGGTAtctaaattatttaatttttctttatc
tgATGATTAAGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026696XLOC_026696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042930-exon-sc0003789-1491911889:3..72TCONS_00042930-exon-sc0003789-1491911889:3..72Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1510915933:3..72TCONS_00042930-exon-sc0003789-1510915933:3..72Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1575043694:3..72TCONS_00042930-exon-sc0003789-1575043694:3..72Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1491911889:149..224TCONS_00042930-exon-sc0003789-1491911889:149..224Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1510915933:149..224TCONS_00042930-exon-sc0003789-1510915933:149..224Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1575043694:149..224TCONS_00042930-exon-sc0003789-1575043694:149..224Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1491911889:474..617TCONS_00042930-exon-sc0003789-1491911889:474..617Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1510915933:474..617TCONS_00042930-exon-sc0003789-1510915933:474..617Clytia hemisphaericaexon
TCONS_00042930-exon-sc0003789-1575043694:474..617TCONS_00042930-exon-sc0003789-1575043694:474..617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003789supercontigsc0003789:3..617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.87246	0.850786	0.493922	2.41613	0	0	0.560842	0	1.47041	4.09802	3.97763	2.90527	1.43968	4.51943	2.47706	1.59496	3.25009	2.68522	0.463722	0.970504	0.843544	1.85153	0	0.45473	0	1.254	1.19632	0	0.968362	1.47991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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