TCONS_00042927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042927
Unique NameTCONS_00042927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042927 ID=TCONS_00042927|Name=TCONS_00042927|organism=Clytia hemisphaerica|type=transcript|length=731bp
tagaaaaaaaatatttgaaatggaaacaaattCAGCATTGACGCAACCAT
GGAATCATTCTACCTTTAAAACTGTTATCATCGTTATGTTGTTATTgtag
aaaaacttttaactGGAGCTTTTGCTCAATTATAAGTCTTGTTACAGTCG
TTGAAGTAAATTCATTTGGATTTCCAATGGAAAGTATATCAATACATTAC
GCTTCAGAATGACAGACTTTATTGGTGGCTTGAAAACTCAAAATTCTATC
TCCTTCGCTTCAAACACTcggaaatgtaataaaaataaacGTGTACAATG
TAGTCCAGAaactggagctcaactactttttgcctttaataATTCTgatt
ggggaaaaagtagagagcgtagcgccatcattcaaatcagaaagcaaagA
TGGTTTACGGCAGATAGATTTTCTGGCTATGTACAGTGTAAAATAAATAT
TCATCGGAAATCTCAGAAGATTAATCGAGAATCACAGTTTTAATGATACA
CACAACGGATTATTATACACAAAATTTCGTATGTGAGGCTCTAATAAAGA
CTCGGCAAGAATGGGATGGATATTGAGATGGGAGATTCGGCAGATTTTTT
AGAACATATTAgcttttttatctttgaaatgAAAGATACTGTATTACAAT
AAAGATATAATGTACTGTATGTAGTAGATTTTGTCAATGAAAATGTTACT
TTCTTCATATCTCAACATCTAGAAGCTCGAT
Run BLAST on NCBI

transcript from alignment at sc0003786:656..1386

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042927 ID=TCONS_00042927|Name=TCONS_00042927|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0003786:656..1386 (Clytia hemisphaerica)
ATCGAGCTTCTAGATGTTGAGATATGAAGAAAGTAACATTTTCATTGACA
AAATCTACTACATACAGTACATTATATCTTTATTGTAATACAGTATCTTT
catttcaaagataaaaaagcTAATATGTTCTAAAAAATCTGCCGAATCTC
CCATCTCAATATCCATCCCATTCTTGCCGAGTCTTTATTAGAGCCTCACA
TACGAAATTTTGTGTATAATAATCCGTTGTGTGTATCATTAAAACTGTGA
TTCTCGATTAATCTTCTGAGATTTCCGATGAATATTTATTTTACACTGTA
CATAGCCAGAAAATCTATCTGCCGTAAACCATctttgctttctgatttga
atgatggcgctacgctctctactttttccccaatcAGAATtattaaaggc
aaaaagtagttgagctccagttTCTGGACTACATTGTACACgtttatttt
tattacatttccgAGTGTTTGAAGCGAAGGAGATAGAATTTTGAGTTTTC
AAGCCACCAATAAAGTCTGTCATTCTGAAGCGTAATGTATTGATATACTT
TCCATTGGAAATCCAAATGAATTTACTTCAACGACTGTAACAAGACTTAT
AATTGAGCAAAAGCTCCagttaaaagtttttctacAATAACAACATAACG
ATGATAACAGTTTTAAAGGTAGAATGATTCCATGGTTGCGTCAATGCTGa
atttgtttccatttcaaatattttttttcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026694XLOC_026694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042927-exon-sc0003786-1491911889:656..1386TCONS_00042927-exon-sc0003786-1491911889:656..1386Clytia hemisphaericaexon
TCONS_00042927-exon-sc0003786-1510915933:656..1386TCONS_00042927-exon-sc0003786-1510915933:656..1386Clytia hemisphaericaexon
TCONS_00042927-exon-sc0003786-1575043694:656..1386TCONS_00042927-exon-sc0003786-1575043694:656..1386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003786supercontigsc0003786:656..1386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.300889	0.0769535	0.1326	9.00637	6.55102	7.9328	9.10696	1.22461	1.81617	1.21965	1.0964	2.99276	2.79873	0.456344	1.23689	3.14534	1.6772	5.91373	7.81066	1.78873	2.94282	0.75643	1.36962	1.56934	2.24337	0.822614	0.527241	0	0.257242
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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