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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042923 ID=TCONS_00042923|Name=TCONS_00042923|organism=Clytia hemisphaerica|type=transcript|length=1047bp
ACAATATTATGCAGATGATTGTAGCTCTTCGTAGTGTCTTTTATACTCGT
GGTCGGGGAGTAATCTAAGATTGGTTTTTGGTCTTAGAAAAGACACTATT
GGAGTATCGGTGGTGTTTTCAGATTTTGTTGGTGTGGATGTTTTTGGGGA
TGGAAGTGAAGGAAATTGTGATATATGTTGTGATTCGTCTGTAGTAAAAT
CAGAGATCGTTTGTGATTCTACTTGAGGAGGAGACGGTGGTGTTTCTTTG
ACGACTTCAATATAATTTTCTATGATTCGATGTGGATCAATATCCTCTCC
TTCTGGTTCATCAATAATATCTCTTGTGTTATCTAAATCATTTTCTTCAG
CCTAGGACAACTCAGGGAAGAGAGGTTGACTTAGGACCTCACTCGACCCG
GTACTTACCATAGCTACTTGGCTTTCCTCCGGTGGTGGGGTTTCGGAACG
TCCTCTCTTCGGGCTCGGTTGTTCTTCTATTTCTGTTCGTAAGGCCTTGC
TAAAAAGCTTGGCTTGTTGTCCTTTTTCCATCGGTTCATCCATTGTAAAG
TCAACAACATCAAGAATTTGCGTTTTTTGTTGGTGTTGGTGTNCTGTTCG
TAAGGCCTTGCTAAAAAGCTTGGCTTGTTGTCCTTTTTCCATCGGTTCAT
CCATTGTAAAGTCAACAACATCAAGAATTTGCGTTTTTTGTTGGTGCTGG
AACTGGAGGTGGATTGAAGGTCACATTTGATGATTTCTCCAATCTTTCAG
ATGGTGTTGTTTTGTTTTCCAATCCCTCATTTgtaggtttgtttttgttt
ttcttctttttctttttggttttctttAGTATACTTTTTGGTGGTTCTGG
TTTCAGCTTTTTTGAGTATTTCGACATCTTTTGATGTTACGCACATGTAT
ACGTTTTTTCGTGCTATTCCTTGTAGATGTATTTTGTTTAAAGCTTCTCT
TAGGTCCGTGACTTTCTTGTGGCCTATGGATggtcctccactctgagctt
ctattctttgacactttctttgtattgccaagttttgaaagtttttc Run BLAST on NCBI protein sequence of TCONS_00042923-protein >TCONS_00042923-protein ID=TCONS_00042923-protein|Name=TCONS_00042923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MDEPMEKGQQAKLFSKALRTXHQHQQKTQILDVVDFTMDEPMEKGQQAKL
FSKALRTEIEEQPSPKRGRSETPPPEESQVAMVSTGSSEVLSQPLFPELS Run BLAST on NCBI transcript from alignment at sc0003783:6429..7475 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042923 ID=TCONS_00042923|Name=TCONS_00042923|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at sc0003783:6429..7475 (Clytia hemisphaerica)
gaaaaactttcaaaacttggcaatacaaagaaagtgtcaaagaatagaag
ctcagagtggaggaccATCCATAGGCCACAAGAAAGTCACGGACCTAAGA
GAAGCTTTAAACAAAATACATCTACAAGGAATAGCACGAAAAAACGTATA
CATGTGCGTAACATCAAAAGATGTCGAAATACTCAAAAAAGCTGAAACCA
GAACCACCAAAAAGTATACTaaagaaaaccaaaaagaaaaagaagaaaaa
caaaaacaaacctacAAATGAGGGATTGGAAAACAAAACAACACCATCTG
AAAGATTGGAGAAATCATCAAATGTGACCTTCAATCCACCTCCAGTTCCA
GCACCAACAAAAAACGCAAATTCTTGATGTTGTTGACTTTACAATGGATG
AACCGATGGAAAAAGGACAACAAGCCAAGCTTTTTAGCAAGGCCTTACGA
ACAGNACACCAACACCAACAAAAAACGCAAATTCTTGATGTTGTTGACTT
TACAATGGATGAACCGATGGAAAAAGGACAACAAGCCAAGCTTTTTAGCA
AGGCCTTACGAACAGAAATAGAAGAACAACCGAGCCCGAAGAGAGGACGT
TCCGAAACCCCACCACCGGAGGAAAGCCAAGTAGCTATGGTAAGTACCGG
GTCGAGTGAGGTCCTAAGTCAACCTCTCTTCCCTGAGTTGTCCTAGGCTG
AAGAAAATGATTTAGATAACACAAGAGATATTATTGATGAACCAGAAGGA
GAGGATATTGATCCACATCGAATCATAGAAAATTATATTGAAGTCGTCAA
AGAAACACCACCGTCTCCTCCTCAAGTAGAATCACAAACGATCTCTGATT
TTACTACAGACGAATCACAACATATATCACAATTTCCTTCACTTCCATCC
CCAAAAACATCCACACCAACAAAATCTGAAAACACCACCGATACTCCAAT
AGTGTCTTTTCTAAGACCAAAAACCAATCTTAGATTACTCCCCGACCACG
AGTATAAAAGACACTACGAAGAGCTACAATCATCTGCATAATATTGT Coding sequence (CDS) from alignment at sc0003783:6429..7475 >TCONS_00042923 ID=TCONS_00042923|Name=TCONS_00042923|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0003783:6429..7475 (Clytia hemisphaerica)
ATGGATGAACCGATGGAAAAAGGACAACAAGCCAAGCTTTTTAGCAAGGC
CTTACGAACAGNACACCAACACCAACAAAAAACGCAAATTCTTGATGTTG
TTGACTTTACAATGGATGAACCGATGGAAAAAGGACAACAAGCCAAGCTT
TTTAGCAAGGCCTTACGAACAGAAATAGAAGAACAACCGAGCCCGAAGAG
AGGACGTTCCGAAACCCCACCACCGGAGGAAAGCCAAGTAGCTATGGTAA
GTACCGGGTCGAGTGAGGTCCTAAGTCAACCTCTCTTCCCTGAGTTGTCC
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042923-exon-sc0003783-1491911889:6429..7475 | TCONS_00042923-exon-sc0003783-1491911889:6429..7475 | Clytia hemisphaerica | exon |
| TCONS_00042923-exon-sc0003783-1510915933:6429..7475 | TCONS_00042923-exon-sc0003783-1510915933:6429..7475 | Clytia hemisphaerica | exon |
| TCONS_00042923-exon-sc0003783-1575043694:6429..7475 | TCONS_00042923-exon-sc0003783-1575043694:6429..7475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003783 | supercontig | sc0003783:6429..7475 . |
Blast
The following BLAST results are available for this feature:
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