TCONS_00042917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042917
Unique NameTCONS_00042917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042917 ID=TCONS_00042917|Name=TCONS_00042917|organism=Clytia hemisphaerica|type=transcript|length=303bp
GAaactggagctcaactactttttgcctttaataATTCTgattggggaaa
aagtagagagcgtagcgccatcattcaaatcagaaagcgaaaATAGTTTA
cggcagattttctgactatgtACAATGTGTAAAATAAATATTCATCGGAA
ATCTCAGAAGATCAATCGAGAATCACAGTTTTAATGATACACACAACGGA
TTATTATACACAAAATTTCGTATGTGAGGCTCTAATAAAGACTCCGCAAG
AATGGGATGGATATTGAGATGGGAGATTCGGCAGATTTTTTAGAACATAT
TAg
Run BLAST on NCBI

transcript from alignment at sc0003773:9437..9739

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042917 ID=TCONS_00042917|Name=TCONS_00042917|organism=Clytia hemisphaerica|type=transcript|length=303bp|location=Sequence derived from alignment at sc0003773:9437..9739 (Clytia hemisphaerica)
cTAATATGTTCTAAAAAATCTGCCGAATCTCCCATCTCAATATCCATCCC
ATTCTTGCGGAGTCTTTATTAGAGCCTCACATACGAAATTTTGTGTATAA
TAATCCGTTGTGTGTATCATTAAAACTGTGATTCTCGATTGATCTTCTGA
GATTTCCGATGAATATTTATTTTACACATTGTacatagtcagaaaatctg
ccgTAAACTATtttcgctttctgatttgaatgatggcgctacgctctcta
ctttttccccaatcAGAATtattaaaggcaaaaagtagttgagctccagt
tTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026684XLOC_026684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042917-exon-sc0003773-1491911889:9437..9739TCONS_00042917-exon-sc0003773-1491911889:9437..9739Clytia hemisphaericaexon
TCONS_00042917-exon-sc0003773-1510915933:9437..9739TCONS_00042917-exon-sc0003773-1510915933:9437..9739Clytia hemisphaericaexon
TCONS_00042917-exon-sc0003773-1575043694:9437..9739TCONS_00042917-exon-sc0003773-1575043694:9437..9739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003773supercontigsc0003773:9437..9739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.12041	3.93345	3.19433	4.23717	1.7373	0.83182	1.49892	0.491768	0.251113	2.38336	0	0.298822	0.711161	0.69083	1.5908	9.57226	13.0632	3.20587	0	0.818028	1.55751	0	0	0.766363	0.0245256	0.836991	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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