TCONS_00042907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042907
Unique NameTCONS_00042907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042907 ID=TCONS_00042907|Name=TCONS_00042907|organism=Clytia hemisphaerica|type=transcript|length=1865bp
gttttcttcttttaggtaaaagaaaaaaacatggctgaTAAAATAATTGC
TGCCCCCAAAATTACTGAAAAAGGCTTCATTGCAATGAAGATTTGTCCGA
AATGCACGAAGAAGATTGGGGTGGCATCTAAAAGTTGTGCCCACTGTGGC
CACAttataacaaaaaaagaaagtcaGGTAAAAGAACGAAGTGGGACGAT
AAATGCATCGAGAAGAAAGGGGGACATAAAAAAGATCATGGATGATTTAC
ATAAAAATGATGATTATGATGCCGTTACCTTTTTTTACCACAAGACAAAA
CGTAAAAGAACCTTCCAATTCCGGTGTACGGAAGGCCCCATGAAGCGAGC
CCTATCAAACCAGGGAACTCTGAAAACACTGAGAAGTGTTTTTGAGAACC
TTGTATCTGCTgccgaaaaagaagaagaaaaagaaaaaaacggaTCAGCG
ACATCGACATCGACACCGACATCGACACAGGCAGAGACACAGGCAGAGAC
AGAAACAACGACAGAGACAAAAACAGGAACTTGGACAGAGACAGCGACAG
AGACTGCGACAGCGACTGCGACAGAGACAGCAACAGAGACCATCGAGATG
GTATTCGAAATTCAGTCGGAAGACGAAAGAGAAGAGGAGGaagagaaaga
agatggaaacgAAAGACAGGCGtttgatctttttaatttttaatttgtct
gattaattttggcgattttTAGCCCTTTTCACGAAAATCTGTACCTTGAA
ATGTGTGGAATcgtattttaacaaaaaagagGTTTAAAGGGTCATTCGTC
GTTTGCAAAACGCAGAACCAGCAAGAACCAGCTGGTGCGTTTTGACACGC
CGCATTAACTAATTCTTCAAGTAGGGATTGTATTTATTCGAATAGCCCAA
TCTGAGATCTAAAGATAGTCTGGGTGTGGATTGAGGATCGAGTTTATGCA
GGACTATCATGATACGATTGCACCGATGATACAACCTGAATGATAAGTGA
ATATAAAAGTAATTACTTCTTTCTACATTATAGAGGAGCTATAGTTCTTA
GGCGATTTACAAACAACGCATTCGCGAAACTAAATCTGTGCAGAATTTCT
CAAACTGCAcactcgcaaaattaaatccgcCCTCGTAATTCCAACTCGTG
AAAATTAATCAgattaaagtattttttgtttAGACCTTTCCCTTCCGTTT
TATCATAGTTTTTATAGCGACATCGACAGAGACTGCGACAGAGACAGAGA
CGACGACAGAGACTGCGACAGCGACTGCGACAGCGACTGCGACAGAGACA
GCGACAGCGACAGCGACAGAGACTGCGACAGAGACGACGACAGAGACTGC
GACAGAGACGACGACAGAGACTGCGACAGAGACAGAGACTGCGACAGAGA
CGACGACATCGACAGAGATGACGACAGAGACTGCGGCAGAGACAGTGACA
GAGACGACGACAGAGACAGCGACAGATTAATAATGCGTAATATTATTTGA
AAACGCTTTGCTTTTACTCGTGCAATTTATCCTAAAAAGTCCTCTTCCCG
ATACGATTGTTAGTACGAATTTCATCATATTCGAAATTAAAACTTAGCAA
GtctagattttatttttgcatcTTTTGTGATTCGCAaggtatttttattg
ttttcttcaaatttttagcTTCTGATTTTTATGACATTATCATGCCaagt
tttaaatgtacatacgcAGTCGTTTTTAaccataaaaaagaaattacatA
TTAGATactttattttatatttatatatttatatatataCTTTTTAACAA
GCGAACAAAGTTGCTATCTTTTTTATCAAGTGTATacgagaaaagaaaaa
aagaaatttcgaaaa
Run BLAST on NCBI

transcript from alignment at sc0003767:2890..6260-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042907 ID=TCONS_00042907|Name=TCONS_00042907|organism=Clytia hemisphaerica|type=transcript|length=3371bp|location=Sequence derived from alignment at sc0003767:2890..6260- (Clytia hemisphaerica)
GTTTTCTTCTTTTAGGTAAAAGAAAAAAACATGGCTGATAAAATAATTGC
TGCCCCCAAAATTACTGAAAAAGGCTTCATTGCAATGAAGGTAATAAATA
AATTATATATTGTTCAATTTCTTTCAAAACTAAGTCTTTCAAAACTAAAT
CGACCTTATTATTTAACATTTTTTTAATGTTGGAGACAAGAAGTTGAAAC
GTATAAGTTGGTTTCTTTAAATACAGTATATGATTTTTCTCTTACAGATT
TGTCCGAAATGCACGAAGAAGATTGGGGTGGCATCTAAAAGTTGTGCCCA
CTGTGGCCACATTATAACAAAAAAAGAAAGTCAGGTAAAAGAACGAAGTG
GGACGATAAATGCATCGAGAAGAAAGGGGGACATAAAAAAGATCGTAAGT
TTTCCAAACAGCATTTTTATCTCACTACCCAAAGTTTGTCTTCTATCTAT
GCATGTAAACTGGTTTGTCAATGAATTTGTCTTGCATGTTCGTATTGTTT
TAGTCTACGGTAGATTGTATATTTATTAATTTCTTGATACACAGTAACTG
ACAAAGAGGTAATTAGCTATTTTTTATTGTCAGTGTCACTTTTTAACGAA
CATAAAAGTACTGGGCAAGAAGGGCTTAATATATCCAACAAACAGTACCA
AGTACCATCCCTTCAGAAGAGCACACGTTTTAGGCAAAAAGACATTGGTA
ATAATTTTCAGAGAACTCTGTCTGAAACTTAGGTATAACCTTTTACACCA
TATTCCTCTTGTGATACCTTCCTTAATTAATTACTATTAGTTAATTAATT
AATTAATCGTTGTAAATATTATACAGAATGTAAAATTTTATTTTTACTAT
CATCTTTCAGATGGATGATTTACATAAAAATGATGATTATGATGCCGTTA
CCTTTTTTTACCACAAGACAAAACGTAAAAGGTACAACATTTTTAACCCC
AACCAGCATGTTTAATTTCATGTAGACAAAACTTTCATTAACCGTTTCAA
ATTATTGGAAACTGATGTGAAATAGACATCTCATATCGGGCGGGTGTCCA
GGATTTTACTGGCATAAGGTTTAAAGGTTTATTTTGTTCTCAGAGGAATT
CATACTGCTCTAACCCCACTTTCTAATAAGTATTTTAAAAATTAATTGTA
TTTTTATACTACCCTCGAGGGAAATAAACTTTCGCAACGAGAAACTTTTG
CAAACAATATTTTAATCACAAACGGGCAATTCTTTTTTTTTCATCGCAGA
ACCTGTGATTGAAACAGTTAGTTCTTTTATTAAATTCACAAAAATTTCTT
TCGCAAAAACTCAATTTTGGAGAGCTTGAATTTCTATACTTACTTTCTAC
TTTTAGAACCTTCCAATTCCGGTGTACGGAAGGCCCCATGAAGCGAGCCC
TATCAAACCAGGGAACTCTGAAAACACTGAGAAGTGTTTTTGAGAACCTT
GTATCTGGTAAGATATAATTCATTTGTAATCATATTTTTTTCCTTTTCCT
TTTTAATTCATGTTAATATTATACGGCAATTGAGCAACTTACAAACAGTT
TTACTTTACAAGTAAAATATTTTCACTGAAATTTTTTCAAAACAATAATT
ACCCGCGAATCGGAAACATACAGTTTTTACGGATGGATAGTAGTATATAA
AGAAAATGGGTTTTCTTTGTTCGTTTCCAAATTTCGTGAATTTGAGTTTT
GCGAAGAAAATTTTATGATCGTGAATCTTTTTTATACTTCGTGTGTCAAA
TATCGATAAATTAATTTTATTGTTTGGTCCCTTTTTATGATGCGCGAGAT
TTTCTACCGTAGCTCTATTTTCGGAAAAAAATAGCCGAAGGTTCTTCGAA
ATAGATAGTCGAAATAAAAACAAATGGTTCAACATCCTTAAAATCTATTC
TCAAATAACTTTTAGCTGCCGAAAAAGAAGAAGAAAAAGAAAAAAACGGA
TCAGCGACATCGACATCGACACCGACATCGACACAGGCAGAGACACAGGC
AGAGACAGAAACAACGACAGAGACAAAAACAGGAACTTGGACAGAGACAG
CGACAGAGACTGCGACAGCGACTGCGACAGAGACAGCAACAGAGACCATC
GAGATGGTATTCGAAATTCAGTCGGAAGACGAAAGAGAAGAGGAGGAAGA
GAAAGAAGATGGAAACGAAAGACAGGCGTTTGATCTTTTTAATTTTTAAT
TTGTCTGATTAATTTTGGCGATTTTTAGCCCTTTTCACGAAAATCTGTAC
CTTGAAATGTGTGGAATCGTATTTTAACAAAAAAGAGGTTTAAAGGGTCA
TTCGTCGTTTGCAAAACGCAGAACCAGCAAGAACCAGCTGGTGCGTTTTG
ACACGCCGCATTAACTAATTCTTCAAGTAGGGATTGTATTTATTCGAATA
GCCCAATCTGAGATCTAAAGATAGTCTGGGTGTGGATTGAGGATCGAGTT
TATGCAGGACTATCATGATACGATTGCACCGATGATACAACCTGAATGAT
AAGTGAATATAAAAGTAATTACTTCTTTCTACATTATAGAGGAGCTATAG
TTCTTAGGCGATTTACAAACAACGCATTCGCGAAACTAAATCTGTGCAGA
ATTTCTCAAACTGCACACTCGCAAAATTAAATCCGCCCTCGTAATTCCAA
CTCGTGAAAATTAATCAGATTAAAGTATTTTTTGTTTAGACCTTTCCCTT
CCGTTTTATCATAGTTTTTATAGCGACATCGACAGAGACTGCGACAGAGA
CAGAGACGACGACAGAGACTGCGACAGCGACTGCGACAGCGACTGCGACA
GAGACAGCGACAGCGACAGCGACAGAGACTGCGACAGAGACGACGACAGA
GACTGCGACAGAGACGACGACAGAGACTGCGACAGAGACAGAGACTGCGA
CAGAGACGACGACATCGACAGAGATGACGACAGAGACTGCGGCAGAGACA
GTGACAGAGACGACGACAGAGACAGCGACAGATTAATAATGCGTAATATT
ATTTGAAAACGCTTTGCTTTTACTCGTGCAATTTATCCTAAAAAGTCCTC
TTCCCGATACGATTGTTAGTACGAATTTCATCATATTCGAAATTAAAACT
TAGCAAGTCTAGATTTTATTTTTGCATCTTTTGTGATTCGCAAGGTATTT
TTATTGTTTTCTTCAAATTTTTAGCTTCTGATTTTTATGACATTATCATG
CCAAGTTTTAAATGTACATACGCAGTCGTTTTTAACCATAAAAAAGAAAT
TACATATTAGATACTTTATTTTATATTTATATATTTATATATATACTTTT
TAACAAGCGAACAAAGTTGCTATCTTTTTTATCAAGTGTATACGAGAAAA
GAAAAAAAGAAATTTCGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026674XLOC_026674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042907-exon-sc0003767-1575043694:6171..6260TCONS_00042907-exon-sc0003767-1575043694:6171..6260Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1575043694:5867..6013TCONS_00042907-exon-sc0003767-1575043694:5867..6013Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1575043694:5330..5400TCONS_00042907-exon-sc0003767-1575043694:5330..5400Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1575043694:4804..4904TCONS_00042907-exon-sc0003767-1575043694:4804..4904Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1575043694:2890..4345TCONS_00042907-exon-sc0003767-1575043694:2890..4345Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1510915933:6171..6260TCONS_00042907-exon-sc0003767-1510915933:6171..6260Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1510915933:5867..6013TCONS_00042907-exon-sc0003767-1510915933:5867..6013Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1510915933:5330..5400TCONS_00042907-exon-sc0003767-1510915933:5330..5400Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1510915933:4804..4904TCONS_00042907-exon-sc0003767-1510915933:4804..4904Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1510915933:2890..4345TCONS_00042907-exon-sc0003767-1510915933:2890..4345Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1491911889:6171..6260TCONS_00042907-exon-sc0003767-1491911889:6171..6260Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1491911889:5867..6013TCONS_00042907-exon-sc0003767-1491911889:5867..6013Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1491911889:5330..5400TCONS_00042907-exon-sc0003767-1491911889:5330..5400Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1491911889:4804..4904TCONS_00042907-exon-sc0003767-1491911889:4804..4904Clytia hemisphaericaexon
TCONS_00042907-exon-sc0003767-1491911889:2890..4345TCONS_00042907-exon-sc0003767-1491911889:2890..4345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003767supercontigsc0003767:2890..6260 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.17493	8.43375	3.06111	1.53234	7.97876	7.67946	8.33912	10.4854	11.1121	7.82919	9.61594	11.2525	5.744	10.1609	7.71055	6.94463	12.9336	12.5447	5.76584	4.87854	12.7443	11.6533	5.8472	5.48761	8.43895	8.73378	5.16992	2.82469	3.14705	2.66343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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