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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042905 ID=TCONS_00042905|Name=TCONS_00042905|organism=Clytia hemisphaerica|type=transcript|length=1750bp
ggtaaaagaaaaaaacatggctgaTAAAATAATTGCTGCCCCCAAAATTA
CTGAAAAAGGCTTCATTGCAATGAAGATTTGTCCGAAATGCACGAAGAAG
ATTGGGGTGGCATCTAAAAGTTGTGCCCACTGTGGCCACAttataacaaa
aaaagaaagtcaGGTAAAAGAACGAAGTGGGACGATAAATGCATCGAGAA
GAAAGGGGGACATAAAAAAGATCATGGATGATTTACATAAAAATGATGAT
TATGATGCCGTTACCTTTTTTTACCACAAGACAAAACGTAAAAGCTgccg
aaaaagaagaagaaaaagaaaaaaacggaTCAGCGACATCGACATCGACA
CCGACATCGACACAGGCAGAGACACAGGCAGAGACAGAAACAACGACAGA
GACAAAAACAGGAACTTGGACAGAGACAGCGACAGAGACTGCGACAGCGA
CTGCGACAGAGACAGCAACAGAGACCATCGAGATGGTATTCGAAATTCAG
TCGGAAGACGAAAGAGAAGAGGAGGaagagaaagaagatggaaacgAAAG
ACAGGCGtttgatctttttaatttttaatttgtctgattaattttggcga
ttttTAGCCCTTTTCACGAAAATCTGTACCTTGAAATGTGTGGAATcgta
ttttaacaaaaaagagGTTTAAAGGGTCATTCGTCGTTTGCAAAACGCAG
AACCAGCAAGAACCAGCTGGTGCGTTTTGACACGCCGCATTAACTAATTC
TTCAAGTAGGGATTGTATTTATTCGAATAGCCCAATCTGAGATCTAAAGA
TAGTCTGGGTGTGGATTGAGGATCGAGTTTATGCAGGACTATCATGATAC
GATTGCACCGATGATACAACCTGAATGATAAGTGAATATAAAAGTAATTA
CTTCTTTCTACATTATAGAGGAGCTATAGTTCTTAGGCGATTTACAAACA
ACGCATTCGCGAAACTAAATCTGTGCAGAATTTCTCAAACTGCAcactcg
caaaattaaatccgcCCTCGTAATTCCAACTCGTGAAAATTAATCAgatt
aaagtattttttgtttAGACCTTTCCCTTCCGTTTTATCATAGTTTTTAT
AGCGACATCGACAGAGACTGCGACAGAGACAGAGACGACGACAGAGACTG
CGACAGCGACTGCGACAGCGACTGCGACAGAGACAGCGACAGCGACAGCG
ACAGAGACTGCGACAGAGACGACGACAGAGACTGCGACAGAGACGACGAC
AGAGACTGCGACAGAGACAGAGACTGCGACAGAGACGACGACATCGACAG
AGATGACGACAGAGACTGCGGCAGAGACAGTGACAGAGACGACGACAGAG
ACAGCGACAGATTAATAATGCGTAATATTATTTGAAAACGCTTTGCTTTT
ACTCGTGCAATTTATCCTAAAAAGTCCTCTTCCCGATACGATTGTTAGTA
CGAATTTCATCATATTCGAAATTAAAACTTAGCAAGtctagattttattt
ttgcatcTTTTGTGATTCGCAaggtatttttattgttttcttcaaatttt
tagcTTCTGATTTTTATGACATTATCATGCCaagttttaaatgtacatac
gcAGTCGTTTTTAaccataaaaaagaaattacatATTAGATactttattt
tatatttatatatttatatatataCTTTTTAACAAGCGAACAAAGTTGCT
ATCTTTTTTATCAAGTGTATacgagaaaagaaaaaaagaaatttcgaaaa Run BLAST on NCBI transcript from alignment at sc0003767:2890..6246- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042905 ID=TCONS_00042905|Name=TCONS_00042905|organism=Clytia hemisphaerica|type=transcript|length=3357bp|location=Sequence derived from alignment at sc0003767:2890..6246- (Clytia hemisphaerica)
GGTAAAAGAAAAAAACATGGCTGATAAAATAATTGCTGCCCCCAAAATTA
CTGAAAAAGGCTTCATTGCAATGAAGGTAATAAATAAATTATATATTGTT
CAATTTCTTTCAAAACTAAGTCTTTCAAAACTAAATCGACCTTATTATTT
AACATTTTTTTAATGTTGGAGACAAGAAGTTGAAACGTATAAGTTGGTTT
CTTTAAATACAGTATATGATTTTTCTCTTACAGATTTGTCCGAAATGCAC
GAAGAAGATTGGGGTGGCATCTAAAAGTTGTGCCCACTGTGGCCACATTA
TAACAAAAAAAGAAAGTCAGGTAAAAGAACGAAGTGGGACGATAAATGCA
TCGAGAAGAAAGGGGGACATAAAAAAGATCGTAAGTTTTCCAAACAGCAT
TTTTATCTCACTACCCAAAGTTTGTCTTCTATCTATGCATGTAAACTGGT
TTGTCAATGAATTTGTCTTGCATGTTCGTATTGTTTTAGTCTACGGTAGA
TTGTATATTTATTAATTTCTTGATACACAGTAACTGACAAAGAGGTAATT
AGCTATTTTTTATTGTCAGTGTCACTTTTTAACGAACATAAAAGTACTGG
GCAAGAAGGGCTTAATATATCCAACAAACAGTACCAAGTACCATCCCTTC
AGAAGAGCACACGTTTTAGGCAAAAAGACATTGGTAATAATTTTCAGAGA
ACTCTGTCTGAAACTTAGGTATAACCTTTTACACCATATTCCTCTTGTGA
TACCTTCCTTAATTAATTACTATTAGTTAATTAATTAATTAATCGTTGTA
AATATTATACAGAATGTAAAATTTTATTTTTACTATCATCTTTCAGATGG
ATGATTTACATAAAAATGATGATTATGATGCCGTTACCTTTTTTTACCAC
AAGACAAAACGTAAAAGGTACAACATTTTTAACCCCAACCAGCATGTTTA
ATTTCATGTAGACAAAACTTTCATTAACCGTTTCAAATTATTGGAAACTG
ATGTGAAATAGACATCTCATATCGGGCGGGTGTCCAGGATTTTACTGGCA
TAAGGTTTAAAGGTTTATTTTGTTCTCAGAGGAATTCATACTGCTCTAAC
CCCACTTTCTAATAAGTATTTTAAAAATTAATTGTATTTTTATACTACCC
TCGAGGGAAATAAACTTTCGCAACGAGAAACTTTTGCAAACAATATTTTA
ATCACAAACGGGCAATTCTTTTTTTTTCATCGCAGAACCTGTGATTGAAA
CAGTTAGTTCTTTTATTAAATTCACAAAAATTTCTTTCGCAAAAACTCAA
TTTTGGAGAGCTTGAATTTCTATACTTACTTTCTACTTTTAGAACCTTCC
AATTCCGGTGTACGGAAGGCCCCATGAAGCGAGCCCTATCAAACCAGGGA
ACTCTGAAAACACTGAGAAGTGTTTTTGAGAACCTTGTATCTGGTAAGAT
ATAATTCATTTGTAATCATATTTTTTTCCTTTTCCTTTTTAATTCATGTT
AATATTATACGGCAATTGAGCAACTTACAAACAGTTTTACTTTACAAGTA
AAATATTTTCACTGAAATTTTTTCAAAACAATAATTACCCGCGAATCGGA
AACATACAGTTTTTACGGATGGATAGTAGTATATAAAGAAAATGGGTTTT
CTTTGTTCGTTTCCAAATTTCGTGAATTTGAGTTTTGCGAAGAAAATTTT
ATGATCGTGAATCTTTTTTATACTTCGTGTGTCAAATATCGATAAATTAA
TTTTATTGTTTGGTCCCTTTTTATGATGCGCGAGATTTTCTACCGTAGCT
CTATTTTCGGAAAAAAATAGCCGAAGGTTCTTCGAAATAGATAGTCGAAA
TAAAAACAAATGGTTCAACATCCTTAAAATCTATTCTCAAATAACTTTTA
GCTGCCGAAAAAGAAGAAGAAAAAGAAAAAAACGGATCAGCGACATCGAC
ATCGACACCGACATCGACACAGGCAGAGACACAGGCAGAGACAGAAACAA
CGACAGAGACAAAAACAGGAACTTGGACAGAGACAGCGACAGAGACTGCG
ACAGCGACTGCGACAGAGACAGCAACAGAGACCATCGAGATGGTATTCGA
AATTCAGTCGGAAGACGAAAGAGAAGAGGAGGAAGAGAAAGAAGATGGAA
ACGAAAGACAGGCGTTTGATCTTTTTAATTTTTAATTTGTCTGATTAATT
TTGGCGATTTTTAGCCCTTTTCACGAAAATCTGTACCTTGAAATGTGTGG
AATCGTATTTTAACAAAAAAGAGGTTTAAAGGGTCATTCGTCGTTTGCAA
AACGCAGAACCAGCAAGAACCAGCTGGTGCGTTTTGACACGCCGCATTAA
CTAATTCTTCAAGTAGGGATTGTATTTATTCGAATAGCCCAATCTGAGAT
CTAAAGATAGTCTGGGTGTGGATTGAGGATCGAGTTTATGCAGGACTATC
ATGATACGATTGCACCGATGATACAACCTGAATGATAAGTGAATATAAAA
GTAATTACTTCTTTCTACATTATAGAGGAGCTATAGTTCTTAGGCGATTT
ACAAACAACGCATTCGCGAAACTAAATCTGTGCAGAATTTCTCAAACTGC
ACACTCGCAAAATTAAATCCGCCCTCGTAATTCCAACTCGTGAAAATTAA
TCAGATTAAAGTATTTTTTGTTTAGACCTTTCCCTTCCGTTTTATCATAG
TTTTTATAGCGACATCGACAGAGACTGCGACAGAGACAGAGACGACGACA
GAGACTGCGACAGCGACTGCGACAGCGACTGCGACAGAGACAGCGACAGC
GACAGCGACAGAGACTGCGACAGAGACGACGACAGAGACTGCGACAGAGA
CGACGACAGAGACTGCGACAGAGACAGAGACTGCGACAGAGACGACGACA
TCGACAGAGATGACGACAGAGACTGCGGCAGAGACAGTGACAGAGACGAC
GACAGAGACAGCGACAGATTAATAATGCGTAATATTATTTGAAAACGCTT
TGCTTTTACTCGTGCAATTTATCCTAAAAAGTCCTCTTCCCGATACGATT
GTTAGTACGAATTTCATCATATTCGAAATTAAAACTTAGCAAGTCTAGAT
TTTATTTTTGCATCTTTTGTGATTCGCAAGGTATTTTTATTGTTTTCTTC
AAATTTTTAGCTTCTGATTTTTATGACATTATCATGCCAAGTTTTAAATG
TACATACGCAGTCGTTTTTAACCATAAAAAAGAAATTACATATTAGATAC
TTTATTTTATATTTATATATTTATATATATACTTTTTAACAAGCGAACAA
AGTTGCTATCTTTTTTATCAAGTGTATACGAGAAAAGAAAAAAAGAAATT
TCGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042905-exon-sc0003767-1575043694:6171..6246 | TCONS_00042905-exon-sc0003767-1575043694:6171..6246 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1575043694:5867..6013 | TCONS_00042905-exon-sc0003767-1575043694:5867..6013 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1575043694:5330..5400 | TCONS_00042905-exon-sc0003767-1575043694:5330..5400 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1575043694:2890..4345 | TCONS_00042905-exon-sc0003767-1575043694:2890..4345 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1510915933:6171..6246 | TCONS_00042905-exon-sc0003767-1510915933:6171..6246 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1510915933:5867..6013 | TCONS_00042905-exon-sc0003767-1510915933:5867..6013 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1510915933:5330..5400 | TCONS_00042905-exon-sc0003767-1510915933:5330..5400 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1510915933:2890..4345 | TCONS_00042905-exon-sc0003767-1510915933:2890..4345 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1491911889:6171..6246 | TCONS_00042905-exon-sc0003767-1491911889:6171..6246 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1491911889:5867..6013 | TCONS_00042905-exon-sc0003767-1491911889:5867..6013 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1491911889:5330..5400 | TCONS_00042905-exon-sc0003767-1491911889:5330..5400 | Clytia hemisphaerica | exon |
| TCONS_00042905-exon-sc0003767-1491911889:2890..4345 | TCONS_00042905-exon-sc0003767-1491911889:2890..4345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003767 | supercontig | sc0003767:2890..6246 - |
Blast
The following BLAST results are available for this feature:
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