TCONS_00042902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042902
Unique NameTCONS_00042902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042902 ID=TCONS_00042902|Name=TCONS_00042902|organism=Clytia hemisphaerica|type=transcript|length=443bp
TTAGGAGCAGAGAATCTGATTTATGACTTGATAAAGAAAGGAGCGGTAGT
GAACGCGACTAATTACTTGGGAAGTACCCCATTGCATTACGCATGCCAAA
GAGGTCATCAAAAAGTGGCTGTTTTGTTGACACATTATGACGCTGATCCA
AACATTGTAGACAACGCCGGTAACTCTCCTCTTCACTTGGCCATTGAAAA
TTGCCATGAAATTGTAAGTTTAGTCTCATGGTTAAAGGGAAACTTTGGTC
CCCCGATTTTGTGGCGCGTCAACTTTAGATtggaaaagatttaaaaagGG
ATAGTGAAAACCTTTTAGTCTtatggaaggaaatatttgtacaaccaaat
attgaaaaattgacgTTACGGCAGATTCTTTTCATAATTGTAACAAGCTA
AATTCACTAAGGCAATGCAAAATCAAGAAATCCTTAAGTAGAC
Run BLAST on NCBI

transcript from alignment at sc0003765:8711..9484+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042902 ID=TCONS_00042902|Name=TCONS_00042902|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at sc0003765:8711..9484+ (Clytia hemisphaerica)
TTAGGAGCAGAGAATCTGATTTATGACTTGATAAAGAAAGGAGCGGTAGT
GAACGCGACTAATTACTTGGGAAGTACCCCATTGCATTACGCATGCCAAA
GAGGTCATCAAAAAGTGGCTGTGAGTATTTTGTGTTTTGAGatcaaatca
aattaatttgtttAAATTTTAAGAATTAGTATCCACGAAATACCCTTGAT
TGTTCATTGGTGTTCGTAAAAGTATTTTTAAGTCATAACAAAGACTTgta
aaatggtacttgatccCTCTTGCTTCATATTAAACAAATAATGAAAGAAA
AGGGTCAACGGCTAGTTGAGAAGTCCAGGAAAAGGAGTTGTTCCCTTCTC
TACATTTTGTGCAGATAGCTAAAGAAAAGGGAGCCTCcaggtcgccctcg
actgccgTTGCAAATTTACTGCTAATTCTATATACTTTGATGTCTTTTCA
GGTTTTGTTGACACATTATGACGCTGATCCAAACATTGTAGACAACGCCG
GTAACTCTCCTCTTCACTTGGCCATTGAAAATTGCCATGAAATTGTAAGT
TTAGTCTCATGGTTAAAGGGAAACTTTGGTCCCCCGATTTTGTGGCGCGT
CAACTTTAGATtggaaaagatttaaaaagGGATAGTGAAAACCTTTTAGT
CTtatggaaggaaatatttgtacaaccaaatattgaaaaattgacgTTAC
GGCAGATTCTTTTCATAATTGTAACAAGCTAAATTCACTAAGGCAATGCA
AAATCAAGAAATCCTTAAGTAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026672XLOC_026672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042902-exon-sc0003765-1491911889:8711..8830TCONS_00042902-exon-sc0003765-1491911889:8711..8830Clytia hemisphaericaexon
TCONS_00042902-exon-sc0003765-1510915933:8711..8830TCONS_00042902-exon-sc0003765-1510915933:8711..8830Clytia hemisphaericaexon
TCONS_00042902-exon-sc0003765-1575043694:8711..8830TCONS_00042902-exon-sc0003765-1575043694:8711..8830Clytia hemisphaericaexon
TCONS_00042902-exon-sc0003765-1491911889:9162..9484TCONS_00042902-exon-sc0003765-1491911889:9162..9484Clytia hemisphaericaexon
TCONS_00042902-exon-sc0003765-1510915933:9162..9484TCONS_00042902-exon-sc0003765-1510915933:9162..9484Clytia hemisphaericaexon
TCONS_00042902-exon-sc0003765-1575043694:9162..9484TCONS_00042902-exon-sc0003765-1575043694:9162..9484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003765supercontigsc0003765:8711..9484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.306918	0.454169	0.199087	0.839739	0	0	0	0	1.54906	1.44	1.39901	1.11072	0.507967	0.319215	0.434084	0.279275	0.344259	0.116658	0	0	0.644259	1.34945	0.177898	1.66533	0	0	0.638515	1.44438	0.536714	0.519652
Blast
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BLAST of TCONS_00042902 vs. Swiss-Prot (Human)
Match: ANR27 (Ankyrin repeat domain-containing protein 27 OS=Homo sapiens GN=ANKRD27 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.501e-19
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    4 GAENLIYDLIKKGAVVNATNYLGSTPLHYACQRGHQKVAVLLTHYDADPNIVDNAGNSPLHLAIENCHE 210
            G  +LI  L+ KGA+VNAT+Y G+TPLH ACQ+G+Q V +LL HY A   + DN GN+PLHLA    HE
Sbjct:  474 GQASLIDLLVSKGAMVNATDYHGATPLHLACQKGYQSVTLLLLHYKASAEVQDNNGNTPLHLACTYGHE 542
The following BLAST results are available for this feature:
BLAST of TCONS_00042902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANR275.501e-1956.52Ankyrin repeat domain-containing protein 27 OS=Hom... [more]
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