|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042896 ID=TCONS_00042896|Name=TCONS_00042896|organism=Clytia hemisphaerica|type=transcript|length=1783bp
ATGTCATTGCAGTGTTGacgtcaaaagaaagaaaaaaatctaacgTTCAC
ACCCATTTTTGACGTCGTGCAAGAAAAACAGCACCGAAAAAATGGGTAGA
AAATGCATTGCGCGTGGCTGCAAATCTAATTATAACAAAAGTAAAGCGTc
gcaaaatgaaaatatacgAATCAggaatgaagaaaaatttgccGATTTTC
GTAAAATTCCAATGTATGGTTTCCCAAGCAAGAAGAAAAGACTCTATGAA
AGGCAGCGCTGGATCAAATCCATTCCTTACCTTACCGAAGAGATCGTCAA
TAATAACAATACACCAGCGGTTTGCCGTAAACATTGGCCAGAAAACGCTA
CTTTTGAAACAGGTCAGAACGGCCTTCCTCGACCAATCGAACCACCATCA
AGCTTTGATAATATACCGTCCAGTTCCATTCCAACACCTCTTCCACCTCC
AAGACCAATCGCGACAAACTAAAATTTGAGGACATCGCCAACTCCGATCG
ATTGACATTACTCGGTTTGCCTATCGTCGCATTTCAAGTCAATGGTGAAC
AGTGGATTCAATCTGGTGAATATATATCAGGAATACCATCATTTTCGCTG
AAAATATCGAAAGGTTTGAGATTCATTGCGTACAAAATGGGTGTTCAATG
TACCATAAAATCCCTTTCGAAAAATCGTATCACTCATCTCGATTCATGGT
CGTGTCTTGAGGAAGcactttgctttttgaaaaatagtgaATTCACTCGG
CATCAAACCATTTTACAAGAATAAATAGAATCTATGAAACCACCTCAAGT
CGGAAAAAAACTCTATTCTCTGCAAGTACTGATGTGAGCATTCGGCTACG
ATTCCTGTGAAAGCTATGACTGCTGCTTTTTTGTTCGATCAAATTCAGCA
AACTATTGCTCTGTTGCGTGGCGCTGGTGCCGATATCAAATCAATAATCG
TCGATGGNgtttttattcaaaatgattCCTGTGAAAGCTATGACTGCTGC
TTTTTTGTTCGATCAAATTCAGCAAACTATTGCTCTGTTGCGTGGCGCTG
GTGCCGATATCAAATCAATAATCGTCGATGGAAATCGAACGAACCAGAAT
TTCTTCAAGCAGTTTGATACGGTCACAGACAAACCCTGGTTGACAACTGA
TGGTATTTTCCttctgttcgatttggttcacCTGATTAAAAGTATTCGAA
ATAATTGGTTAACAGAGAAGACTGGCCAACTCACATTCAAAGAAGATAAT
GATACATTCATTGCCATGTGGTCTGACCTTATCCGATTACACGAAGTTGA
AAACATGTCAAACTTCTGCGGAGTTCGTGGCTTATCAAAGTTGACCGAAG
TCGCCGTACGCCCCAAACCGGTCGAACGGCAACGTGTATCGACATGTTTC
CGTGTTTTTTGTGAAGAGACGGTAGCAGCACTTAAAATTCACCCACATAT
GCAAAACATGAATGTCACCGGCACTGTCAAATTCATCGAAAAAGTCACCA
CTATGTGGAAGATCTTAAATGTTCGAACCGTTGGGAATTTGTATTTATAA
TTCACTCATAGGCCCATAAGATATTATCGAACATCTTTCTGAACAATTTC
TGCAAATCGCAGACGCATCGCTCCTCGAAGGAGACGAGCCAGAAAGTTCt
aaagctaaaagaaaaatgaaacatcttTTTCTATCATCACACTCTGAGTG
CATCCAGTTCTTTCAATTTTCTatagtttatttttttaaataaagtgttC
AGATTTCATTGTACTTAGGATATCGTAGTGAAA Run BLAST on NCBI protein sequence of TCONS_00042896-protein >TCONS_00042896-protein ID=TCONS_00042896-protein|Name=TCONS_00042896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MXFLFKMIPVKAMTAAFLFDQIQQTIALLRGAGADIKSIIVDGNRTNQNF
FKQFDTVTDKPWLTTDGIFLLFDLVHLIKSIRNNWLTEKTGQLTFKEDND
TFIAMWSDLIRLHEVENMSNFCGVRGLSKLTEVAVRPKPVERQRVSTCFR
VFCEETVAALKIHPHMQNMNVTGTVKFIEKVTTMWKILNVRTVGNLYL Run BLAST on NCBI transcript from alignment at sc0003759:4249..6267- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042896 ID=TCONS_00042896|Name=TCONS_00042896|organism=Clytia hemisphaerica|type=transcript|length=2019bp|location=Sequence derived from alignment at sc0003759:4249..6267- (Clytia hemisphaerica)
ATGTCATTGCAGTGTTGACGTCAAAAGAAAGAAAAAAATCTAACGTTCAC
ACCCATTTTTGACGTCGTGCAAGAAAAACAGCACCGAAAAAATGGGTAGA
AAATGCATTGCGCGTGGCTGCAAATCTAATTATAACAAAAGTAAAGCGTC
GCAAAATGAAAATATACGAATCAGGAATGAAGAAAAATTTGCCGATTTTC
GTAAAATTCCAATGTATGGTTTCCCAAGCAAGAAGAAAAGACTCTATGAA
AGGCAGCGCTGGATCAAATCCATTCCTTACCTTACCGAAGAGATCGTCAA
TAATAACAATACACCAGCGGTTTGCCGTAAACATTGGCCAGAAAACGCTA
CTTTTGAAACAGGTATGTAACCTTATTGCTTTCGTGGAATATTTGAACAA
GCTAAAGTCTTCGGATAAGTTTTTCTCTGTTCATAGCTTATCTATTAACA
TATTTTCGATATTATAAAAAATCCAAATCTGATGCTTGTTTTTGTTGAAA
ATTTGTATTTATAATTCACTCATATAGTCCCATAAGATACAAATCTACAA
CACAAAGTTCAATTAACTCTTAAACGCTATGTTTATTTCTTTCTTTAGGT
CAGAACGGCCTTCCTCGACCAATCGAACCACCATCAAGCTTTGATAATAT
ACCGTCCAGTTCCATTCCAACACCTCTTCCACCTCCAAGACCAATCGCGA
CAAACTAAAATTTGAGGACATCGCCAACTCCGATCGATTGACATTACTCG
GTTTGCCTATCGTCGCATTTCAAGTCAATGGTGAACAGTGGATTCAATCT
GGTGAATATATATCAGGAATACCATCATTTTCGCTGAAAATATCGAAAGG
TTTGAGATTCATTGCGTACAAAATGGGTGTTCAATGTACCATAAAATCCC
TTTCGAAAAATCGTATCACTCATCTCGATTCATGGTCGTGTCTTGAGGAA
GCACTTTGCTTTTTGAAAAATAGTGAATTCACTCGGCATCAAACCATTTT
ACAAGAATAAATAGAATCTATGAAACCACCTCAAGTCGGAAAAAAACTCT
ATTCTCTGCAAGTACTGATGTGAGCATTCGGCTACGATTCCTGTGAAAGC
TATGACTGCTGCTTTTTTGTTCGATCAAATTCAGCAAACTATTGCTCTGT
TGCGTGGCGCTGGTGCCGATATCAAATCAATAATCGTCGATGGNGTTTTT
ATTCAAAATGATTCCTGTGAAAGCTATGACTGCTGCTTTTTTGTTCGATC
AAATTCAGCAAACTATTGCTCTGTTGCGTGGCGCTGGTGCCGATATCAAA
TCAATAATCGTCGATGGAAATCGAACGAACCAGAATTTCTTCAAGCAGTT
TGATACGGTCACAGACAAACCCTGGTTGACAACTGATGGTATTTTCCTTC
TGTTCGATTTGGTTCACCTGATTAAAAGTATTCGAAATAATTGGTTAACA
GAGAAGACTGGCCAACTCACATTCAAAGAAGATAATGATACATTCATTGC
CATGTGGTCTGACCTTATCCGATTACACGAAGTTGAAAACATGTCAAACT
TCTGCGGAGTTCGTGGCTTATCAAAGTTGACCGAAGTCGCCGTACGCCCC
AAACCGGTCGAACGGCAACGTGTATCGACATGTTTCCGTGTTTTTTGTGA
AGAGACGGTAGCAGCACTTAAAATTCACCCACATATGCAAAACATGAATG
TCACCGGCACTGTCAAATTCATCGAAAAAGTCACCACTATGTGGAAGATC
TTAAATGTTCGAACCGTTGGGAATTTGTATTTATAATTCACTCATAGGCC
CATAAGATATTATCGAACATCTTTCTGAACAATTTCTGCAAATCGCAGAC
GCATCGCTCCTCGAAGGAGACGAGCCAGAAAGTTCTAAAGCTAAAAGAAA
AATGAAACATCTTTTTCTATCATCACACTCTGAGTGCATCCAGTTCTTTC
AATTTTCTATAGTTTATTTTTTTAAATAAAGTGTTCAGATTTCATTGTAC
TTAGGATATCGTAGTGAAA Coding sequence (CDS) from alignment at sc0003759:4249..6267- >TCONS_00042896 ID=TCONS_00042896|Name=TCONS_00042896|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0003759:4249..6267- (Clytia hemisphaerica)
ATGGNGTTTTTATTCAAAATGATTCCTGTGAAAGCTATGACTGCTGCTTT
TTTGTTCGATCAAATTCAGCAAACTATTGCTCTGTTGCGTGGCGCTGGTG
CCGATATCAAATCAATAATCGTCGATGGAAATCGAACGAACCAGAATTTC
TTCAAGCAGTTTGATACGGTCACAGACAAACCCTGGTTGACAACTGATGG
TATTTTCCTTCTGTTCGATTTGGTTCACCTGATTAAAAGTATTCGAAATA
ATTGGTTAACAGAGAAGACTGGCCAACTCACATTCAAAGAAGATAATGAT
ACATTCATTGCCATGTGGTCTGACCTTATCCGATTACACGAAGTTGAAAA
CATGTCAAACTTCTGCGGAGTTCGTGGCTTATCAAAGTTGACCGAAGTCG
CCGTACGCCCCAAACCGGTCGAACGGCAACGTGTATCGACATGTTTCCGT
GTTTTTTGTGAAGAGACGGTAGCAGCACTTAAAATTCACCCACATATGCA
AAACATGAATGTCACCGGCACTGTCAAATTCATCGAAAAAGTCACCACTA
TGTGGAAGATCTTAAATGTTCGAACCGTTGGGAATTTGTATTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042896-exon-sc0003759-1575043694:5906..6267 | TCONS_00042896-exon-sc0003759-1575043694:5906..6267 | Clytia hemisphaerica | exon |
| TCONS_00042896-exon-sc0003759-1575043694:4249..5669 | TCONS_00042896-exon-sc0003759-1575043694:4249..5669 | Clytia hemisphaerica | exon |
| TCONS_00042896-exon-sc0003759-1510915933:5906..6267 | TCONS_00042896-exon-sc0003759-1510915933:5906..6267 | Clytia hemisphaerica | exon |
| TCONS_00042896-exon-sc0003759-1510915933:4249..5669 | TCONS_00042896-exon-sc0003759-1510915933:4249..5669 | Clytia hemisphaerica | exon |
| TCONS_00042896-exon-sc0003759-1491911889:5906..6267 | TCONS_00042896-exon-sc0003759-1491911889:5906..6267 | Clytia hemisphaerica | exon |
| TCONS_00042896-exon-sc0003759-1491911889:4249..5669 | TCONS_00042896-exon-sc0003759-1491911889:4249..5669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003759 | supercontig | sc0003759:4249..6267 - |
Blast
The following BLAST results are available for this feature:
|
