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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042891 ID=TCONS_00042891|Name=TCONS_00042891|organism=Clytia hemisphaerica|type=transcript|length=1718bp
CCCGGTTTCTCGGCTACAGCTGGACAAGCGCGCTTGGTGGCCGGCTGGCG
TTCACTACTTAAATTGAAAAAAAATGAAAATGCAAAGAACAAAATTAAAA
ATGGATCCACGTTTTGTTGCATTTTGTTACAATGTAGCCGAAGCCCAGAG
GGCGGGTACTTAGGCAAATGGAAAATACGTTTACGTGCCGCCTTTCAGGG
TAAGTCTTGCTAAGGGTCTTAAAAATCACAATTTCAAAATTTAGTTCCGG
TTACAAAAAAAAGCAAAACAACCAATTTTTAGGGCCTAAAAAGGCAAAAG
GCATATTTTGATGAAAATATAATGACTTACAGATTTGAATCCTCGTCCGG
TCCACAACTAGATGGAGGTGACGGGTCCGTCGGGTTGGGAAGTGAAGGAG
TGGCTGGAGCGCGCATGGTGGCCGACTGGCGTTCACTAATTGAAATGAAA
ATAAATGAAAATGCTACTTGGGAAAAAATACGTATTAGGTTTTTATAACA
TATATCTTCAAAGTTCCCGGTTTCTCGGCTACAGCTGGACAAGCGCGCTT
GGTGGCCGGCTGGCGTTCACTACTTAAATTGAAAAAAAATGAAAATGCAA
AGAACAAAATTAAAAATGGATCCACGTTTTGTTGCATTTTGTTACATTGT
AGCCGAAGCCCAGAGGGCGGGTACTTAGGCAAATGGAAGATACGGTTAAG
TGCCGCCTTTCAGGGTAAGTTCACGTGTAAGGAAGCCAAAAGAGAAACAC
TGATTTGACGAAAACAATCGGATGTTATAGGGATTATACTTAAAACTAGT
CTTAACTGACGCTATAGTGTGCCCCCCCCGGCTTAAACCTTTACATTTCT
TCGATGTCATCAGCTCATAGAAAAGAGTCACTCCACTCTACAAGACGATT
GAGAGTAAAAGGGTCATTTTTCTTTTAAAAAGATTTATTCCCTACATAAA
GACAATAGAAACCTCCCCCTAGTAAAGCTGATGAAAGATGTTCAAGGAGT
GTTATAAAGGTTTTTGTGAAACCGTTGTGTGAAAGATATATAATAAGCAG
CAGTAATACAAATTACAATTACCTTGGCTTAAGCCATTCAAGACCAGCTG
AAATGAAAAAAAAAATTCAATTGAAGAACGGTTTTGTTTGTGTTATGAAT
TGCAAGAAACTAGAAAACGGCATCATTGTTCCCCAAAAACTGGATTCATC
CTTTTCATTAAACGCTACTCTTAACGAACATAAGTTGAAAAATGCCGATG
CTGAGCACGACAGAGATTTTATATCTTAAAACAAAAGCAAACGATCTAAT
ATCGGAGTAGCCTGTCTCGGTACAAATGGGTTGAAGCTTTATTGAGTATA
TTCAAAGTGTAACGTACCCTAAGCCTACAAATTGTACAAATGGAAAGAAG
CTTTATTGAGTATATTCAAACATATTTTACAGTTCTCTTGCTACCACTTT
AACGGGCAAAAGTATTTACCTTCTTCAACCAATAAATCGGCAAtctctct
tttattttttttctttgtttcttcgTTTAGCTTTTTAGAGATAGCACCGT
ATATTTCGATCGATGACCGGAACGTGTGTTCACCACGACTTCCTCCCGAT
CTAGAAAGATGGCGGAAGGTCACGCAGCGAAGAAGATAAGAATCCGGTAA
ACACGAAGGAGGTGTTACTTCTGGACTTAGGAAGGAAAGAAGATCATTAA
TTCATTAATCAAGTATCA Run BLAST on NCBI transcript from alignment at sc0003755:5745..7732- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042891 ID=TCONS_00042891|Name=TCONS_00042891|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at sc0003755:5745..7732- (Clytia hemisphaerica)
CCCGGTTTCTCGGCTACAGCTGGACAAGCGCGCTTGGTGGCCGGCTGGCG
TTCACTACTTAAATTGAAAAAAAATGAAAATGCAAAGAACAAAATTAAAA
ATGGATCCACGTTTTGTTGCATTTTGTTACAATGTAGCCGAAGCCCAGAG
GGCGGGTACTTAGGCAAATGGAAAATACGTTTACGTGCCGCCTTTCAGGG
TAAGTCTTGCTAAGGGTCTTAAAAATCACAATTTCAAAATTTAGTTCCGG
TTACAAAAAAAAGCAAAACAACCAATTTTTAGGGCCTAAAAAGGCAAAAG
GCATATTTTGATGAAAATATAATGACTTACAGATTTGAATCCTCGTCCGG
TCCACAACTAGATGGAGGTGACGGGTCCGTCGGGTTGGGAAGTGAAGGAG
TGGCTGGAGCGCGCATGGTGGCCGACTGGCGTTCACTAATTGAAATGAAA
ATAAATGAAAATGCTACTTGGGAAAAAATACGTATTAGGTTTTTATAACA
TATATCTTCAAAGTTCCCGGTTTCTCGGCTACAGCTGGACAAGCGCGCTT
GGTGGCCGGCTGGCGTTCACTACTTAAATTGAAAAAAAATGAAAATGCAA
AGAACAAAATTAAAAATGGATCCACGTTTTGTTGCATTTTGTTACATTGT
AGCCGAAGCCCAGAGGGCGGGTACTTAGGCAAATGGAAGATACGGTTAAG
TGCCGCCTTTCAGGGTAAGTTCACGTGTAAGGAAGCCAAAAGAGAAACAC
TGATTTGACGAAAACAATCGGATGTTATAGGGATTATACTTAAAACTAGT
CTTAACTGACGCTATAGTGTGCCCCCCCCGGCTTAAACCTTTACATTTCT
TCGATGTCATCAGCTCATAGAAAAGAGTCACTCCACTCTACAAGACGATT
GAGAGTAAAAGGGTCATTTTTCTTTTAAAAAGATTTATTCCCTACATAAA
GACAATAGAAACCTCCCCCTAGTAAAGCTGATGAAAGATGTTCAAGGAGT
GTTATAAAGGTTTTTGTGAAACCGTTGTGTGAAAGATATATAATAAGCAG
CAGTAATACAAATTACAATTACCTTGGCTTAAGCCATTCAAGACCAGCTG
AAATGAAAAAAAAAATTCAATTGAAGAACGGTTTTGTTTGTGTTATGAAT
TGCAAGAAACTAGAAAACGGCATCATTGTTCCCCAAAAACTGGATTCATC
CTTTTCATTAAACGCTACTCTTAACGAACATAAGTTGAAAAATGCCGATG
CTGAGCACGACAGAGATTTTATATCTTAAAACAAAAGCAAACGATCTAAT
ATCGGAGTAGCCTGTCTCGGTACAAATGGGTTGAAGCTTTATTGAGTATA
TTCAAAGTGTAACGTACCCTAAGCCTACAAATTGTACAAATGGAAAGAAG
CTTTATTGAGTATATTCAAACATATTTTACAGTTCTCTTGCTACCACTTT
AACGGGCAAAAGTATTTACCTTCTTCAACCAATAAATCGGCAATCTCTCT
TTTATTTTTTTTCTTTGTTTCTTCGTTTAGCTTTTTAGAGATAGCACCGT
ATATTTCGATCGATGACCGGAACGTGTGTTCACCACGACTTCCTCCCGAT
CTAGAAAGGTATAGTACCAAGGCAGACCGTGGTTCCTCAGAGCAGATGTT
CACCATTTTTTCCGTAATTTGTCGTTTTTTATTACTTACATATACAGCAA
AGTTTTTCTTGGAGGACATGATGGCAAGTTATTCTTCTCTTGATGCCGGA
TAAGGTAGATTGATGGTAGTTATGAAAGTAGATAGACAAACACTTTTTGT
AAGTTAGTTGAATTTTAAATTTTTGACGTAAAACTACTTATTTGACGTCA
ATTCACTTTTCTACATCAATTTTTAAAGATGGCGGAAGGTCACGCAGCGA
AGAAGATAAGAATCCGGTAAACACGAAGGAGGTGTTACTTCTGGACTTAG
GAAGGAAAGAAGATCATTAATTCATTAATCAAGTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042891-exon-sc0003755-1575043694:6125..7732 | TCONS_00042891-exon-sc0003755-1575043694:6125..7732 | Clytia hemisphaerica | exon |
| TCONS_00042891-exon-sc0003755-1575043694:5745..5854 | TCONS_00042891-exon-sc0003755-1575043694:5745..5854 | Clytia hemisphaerica | exon |
| TCONS_00042891-exon-sc0003755-1510915933:6125..7732 | TCONS_00042891-exon-sc0003755-1510915933:6125..7732 | Clytia hemisphaerica | exon |
| TCONS_00042891-exon-sc0003755-1510915933:5745..5854 | TCONS_00042891-exon-sc0003755-1510915933:5745..5854 | Clytia hemisphaerica | exon |
| TCONS_00042891-exon-sc0003755-1491911889:6125..7732 | TCONS_00042891-exon-sc0003755-1491911889:6125..7732 | Clytia hemisphaerica | exon |
| TCONS_00042891-exon-sc0003755-1491911889:5745..5854 | TCONS_00042891-exon-sc0003755-1491911889:5745..5854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003755 | supercontig | sc0003755:5745..7732 - |
Blast
The following BLAST results are available for this feature:
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