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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042885 ID=TCONS_00042885|Name=TCONS_00042885|organism=Clytia hemisphaerica|type=transcript|length=1466bp
GCACTTTTAAATGCGATTAATCCCAACAAACCATAAGAAAATTTATCCTT
TTAGAATGAAACCGGTAATGAAAAGATCACGCGGCTCTCAAACTGATGGA
TTTAATATGGACAAGCCAAAAAAGATGACTGTCGATACCTCAACACAGAT
TTCTTCTTCAACTGGTAGTTATAAAAGAAACAGAATTATAAATGACCTTG
ATAAAGAAGGAATGACAATAAGAAAACTTTACACCGAGGTAATATGTAAT
AAAGAGACAGCTATCCGATGGGCAATGGATAATGGCTTGATTGCTTCGTC
AATGAAATGCTCATTTTGTTCCAGTGATATGGACTTAAAAGATGCACAAA
ATTATTCATCTGATGGGTGTAGGTGGCGCTGTAGAAAAAAAGACCATAGC
AGCGAAGCTTCCATTCGAAAAGGATCgtggtttgaaaaatctaatttgAC
GTTAGAAGAAATCATTGAATTAACTTATTGGTGGTCAACTGgttGTGAAC
AAACACAAGTTTGTAAAGAGATGGGAGTCAGTAGTAAAACAGCAGTCGAC
TGGTATAGTTTCTGCAGAGAAGTGTGCGAGGTGATAATAATGGTCCATAG
CAAGCCTATTGGTGGTCCAGgTACCCGTGTTCAAATTGACGAATCTAAAT
TTGGAAAGCGGAAGTACCACCGTGGTCATAAAGTAGAAGGTCAATGGGTG
TTTGGTGGAATTGAGGAAGAAAGTAGGCAAAACTTTATGGTTGCTGTGGA
AAAAAGGGATAAGAAGACCCTCATCCCTATCATTGAACGGTATATTTTAC
CTGGAACAACAATCATATCTGATTGCTGGAAAGCTTATGACTGTCTGTCT
CAGAAGGATTACGAACATTTGAAGGTAAACCACTCTGTTGAATTCGTTAA
CAGTAACGGAGATCATACCAATAAAATTGAGGGTCACTGGcgtcaagtga
aaaaaaatttgcctccTTTTGGTGTCAAGAAATATCTCTTTTCATCTCAC
CTGGCTGAGTTCATGTGGCGGTACACCCATAAAGAGTCANATATCTGATT
GCTGGAAAGCTTATGACTGTCTGTCTCAGAAGGATTACGAACATTTGAAG
GTAAACCACTCTGTTGAATTCGTTAACAGTAACGGAGATCATACCAATAA
AATTGAGGGTCACTGGCGTcaagcgaaaaaaaatttgcctccTTTTGGTG
TCAAGAAATATCTCTTTTCATCTCACCTGGCTGAGTTCATGTGGCGGTAC
ACCCATAAAGAGTCAGACCATTTCATTCAATTCATTAATGATGTCACGAA
AGTTTACAGCCCTAATGTATGAACGTAAAACAGTTTTGATTTTCTGTAAA
TAGTTTTAATGACTATCGTTTAATATAAATACTTACGTAATGTAAAACAC
AACTCACATTCTTTTGATTTCAAACAAATATACCATGACAGTAAAGTAGC
AAAGTAGCAAAGTAGC Run BLAST on NCBI protein sequence of TCONS_00042885-protein >TCONS_00042885-protein ID=TCONS_00042885-protein|Name=TCONS_00042885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MRLIPTNHKKIYPFRMKPVMKRSRGSQTDGFNMDKPKKMTVDTSTQISSS
TGSYKRNRIINDLDKEGMTIRKLYTEVICNKETAIRWAMDNGLIASSMKC
SFCSSDMDLKDAQNYSSDGCRWRCRKKDHSSEASIRKGSWFEKSNLTLEE
IIELTYWWSTGCEQTQVCKEMGVSSKTAVDWYSFCREVCEVIIMVHSKPI
GGPGTRVQIDESKFGKRKYHRGHKVEGQWVFGGIEEESRQNFMVAVEKRD
KKTLIPIIERYILPGTTIISDCWKAYDCLSQKDYEHLKVNHSVEFVNSNG
DHTNKIEGHWRQVKKNLPPFGVKKYLFSSHLAEFMWRYTHKESXI Run BLAST on NCBI transcript from alignment at sc0003755:2931..5021+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042885 ID=TCONS_00042885|Name=TCONS_00042885|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at sc0003755:2931..5021+ (Clytia hemisphaerica)
GCACTTTTAAATGCGATTAATCCCAACAAACCATAAGAAAATTTATCCTT
TTAGAATGAAACCGGTAATGAAAAGATCACGCGGCTCTCAAACTGATGGA
TTTAATATGGACAAGCCAAAAAAGATGACTGTCGATACCTCAACACAGAT
TTCTTCTTCAACTGGTAGTTATAAAAGAAACAGAATTATAAATGACCTTG
ATAAAGAAGGAATGACAATAAGAAAACTTTACACCGAGGTAATATGTAAT
AAAGAGACAGCTATCCGATGGGCAATGGATAATGGCTTGATTGCTTCGTC
AATGAAATGCTCATTTTGTTCCAGTGATATGGACTTAAAAGATGCACAAA
ATTATTCATCTGATGGGTGTAGGTGGCGCTGTAGAAAAAAAGACCATAGC
AGCGAAGCTTCCATTCGAAAAGGATCgtggtttgaaaaatctaatttgAC
GTTAGAAGAAATCATTGAATTAACTTATTGGTGGTCAACTGGCAAGTATT
TTCgacagaaaaataatttaaacttGTTTAGGATGTTGATAGATGATTAT
ATCGTCCGTTAGAGTGATAGTAAAAACAGGGGAGTAAAGAACAAATACAT
ACAATTTgcatgaatttaaatttttttataaatctaatatctacatttat
tttttaaggttGTGAACAAACACAAGTTTGTAAAGAGATGGGAGTCAGTA
GTAAAACAGCAGTCGACTGGTATAGTTTCTGCAGAGAAGTGTGCGAGGTG
ATAATAATGGTCCATAGCAAGCCTATTGGTGGTCCAGGTTGGTAGATGAT
TTTTTACACTGGAACTAATTTGTGTTAATTACAAAGGACAGCCTTCAAAG
GAGCCAAAAGTTCATAATTTCAGACTTAGACAagctttctttttgaaatt
ctttacaAATAGAGCACAATTTGAAACGtatgatattttcaaaatttagg
ttAATGCACTAAAATTATATatggattgaaatttttttcttaggTACCCG
TGTTCAAATTGACGAATCTAAATTTGGAAAGCGGAAGTACCACCGTGGTC
ATAAAGTAGAAGGTCAATGGGTGTTTGGTGGAATTGAGGAAGAAAGTAGG
CAAAACTTTATGGTTGCTGTGGAAAAAAGGGATAAGAAGACCCTCATCCC
TATCATTGAACGGTATATTTTACCTGGAACAACAATCATATCTGATTGCT
GGAAAGCTTATGACTGTCTGTCTCAGAAGGATTACGAACATTTGAAGGTA
TTTCATCCACtgttgatttttatttattgttaTTTCGTTATATTTGATGG
CCTTTGATCATATTCAATTCGTatttaatcaatcaatcaaagcATAAACT
GCATTTTCTCATTCTCTTTTTAGGTAAACCACTCTGTTGAATTCGTTAAC
AGTAACGGAGATCATACCAATAAAATTGAGGGTCACTGGcgtcaagtgaa
aaaaaatttgcctccTTTTGGTGTCAAGAAATATCTCTTTTCATCTCACC
TGGCTGAGTTCATGTGGCGGTACACCCATAAAGAGTCANATATCTGATTG
CTGGAAAGCTTATGACTGTCTGTCTCAGAAGGATTACGAACATTTGAAGG
TATTTCATCCACtgttgatttttatttatttttattgcgtTATATTTGAT
GGCCTTTGATCATATTCAATTCGTatttaatcaatcaatcaaagcATAAA
CTGCAATTTCTCATTCTCTTTTTAGGTAAACCACTCTGTTGAATTCGTTA
ACAGTAACGGAGATCATACCAATAAAATTGAGGGTCACTGGCGTcaagcg
aaaaaaaatttgcctccTTTTGGTGTCAAGAAATATCTCTTTTCATCTCA
CCTGGCTGAGTTCATGTGGCGGTACACCCATAAAGAGTCAGACCATTTCA
TTCAATTCATTAATGATGTCACGAAAGTTTACAGCCCTAATGTATGAACG
TAAAACAGTTTTGATTTTCTGTAAATAGTTTTAATGACTATCGTTTAATA
TAAATACTTACGTAATGTAAAACACAACTCACATTCTTTTGATTTCAAAC
AAATATACCATGACAGTAAAGTAGCAAAGTAGCAAAGTAGC Coding sequence (CDS) from alignment at sc0003755:2931..5021+ >TCONS_00042885 ID=TCONS_00042885|Name=TCONS_00042885|organism=Clytia hemisphaerica|type=CDS|length=4152bp|location=Sequence derived from alignment at sc0003755:2931..5021+ (Clytia hemisphaerica)
ATGCGATTAATCCCAACAAACCATAAGAAAATTTATCCTTTTAGAATGAA
ACCGGTAATGAAAAGATCACGCGGCTCTCAAACTGATGGATTTAATATGG
ACAAGCCAAAAAAGATGACTGTCGATACCTCAACACAGATTTCTTCTTCA
ACTGGTAGTTATAAAAGAAACAGAATTATAAATGACCTTGATAAAGAAGG
AATGACAATAAGAAAACTTTACACCGAGGTAATATGTAATAAAGAGACAG
CTATCCGATGGGCAATGGATAATGGCTTGATTGCTTCGTCAATGAAATGC
TCATTTTGTTCCAGTGATATGGACTTAAAAGATGCACAAAATTATTCATC
TGATGGGTGTAGGTGGCGCTGTAGAAAAAAAGACCATAGCAGCGAAGCTT
CCATTCGAAAAGGATCgtggtttgaaaaatctaatttgACGTTAGAAGAA
ATCATTGAATTAACTTATTGGTGGTCAACTGgttGTGAACAAACACAAGT
TTGTAAAGAGATGGGAGTCAGTAGTAAAACAGCAGTCGACTGGTATAGTT
TCTGCAGAGAAGTGTGCGAGGTGATAATAATGGTCCATAGCAAGCCTATT
GGTGGTCCAGgTACCCGTGTTCAAATTGACGAATCTAAATTTGGAAAGCG
GAAGTACCACCGTGGTCATAAAGTAGAAGGTCAATGGGTGTTTGGTGGAA
TTGAGGAAGAAAGTAGGCAAAACTTTATGGTTGCTGTGGAAAAAAGGGAT
AAGAAGACCCTCATCCCTATCATTGAACGGTATATTTTACCTGGAACAAC
AATCATATCTGATTGCTGGAAAGCTTATGACTGTCTGTCTCAGAAGGATT
ACGAACATTTGAAGGTAAACCACTCTGTTGAATTCGTTAACAGTAACGGA
GATCATACCAATAAAATTGAGGGTCACTGGcgtcaagtgaaaaaaaattt
gcctccTTTTGGTGTCAAGAAATATCTCTTTTCATCTCACCTGGCTGAGT
TCATGTGGCGGTACACCCATAAAGAGTCANATATCTGAATGCGATTAATC
CCAACAAACCATAAGAAAATTTATCCTTTTAGAATGAAACCGGTAATGAA
AAGATCACGCGGCTCTCAAACTGATGGATTTAATATGGACAAGCCAAAAA
AGATGACTGTCGATACCTCAACACAGATTTCTTCTTCAACTGGTAGTTAT
AAAAGAAACAGAATTATAAATGACCTTGATAAAGAAGGAATGACAATAAG
AAAACTTTACACCGAGGTAATATGTAATAAAGAGACAGCTATCCGATGGG
CAATGGATAATGGCTTGATTGCTTCGTCAATGAAATGCTCATTTTGTTCC
AGTGATATGGACTTAAAAGATGCACAAAATTATTCATCTGATGGGTGTAG
GTGGCGCTGTAGAAAAAAAGACCATAGCAGCGAAGCTTCCATTCGAAAAG
GATCgtggtttgaaaaatctaatttgACGTTAGAAGAAATCATTGAATTA
ACTTATTGGTGGTCAACTGgttGTGAACAAACACAAGTTTGTAAAGAGAT
GGGAGTCAGTAGTAAAACAGCAGTCGACTGGTATAGTTTCTGCAGAGAAG
TGTGCGAGGTGATAATAATGGTCCATAGCAAGCCTATTGGTGGTCCAGgT
ACCCGTGTTCAAATTGACGAATCTAAATTTGGAAAGCGGAAGTACCACCG
TGGTCATAAAGTAGAAGGTCAATGGGTGTTTGGTGGAATTGAGGAAGAAA
GTAGGCAAAACTTTATGGTTGCTGTGGAAAAAAGGGATAAGAAGACCCTC
ATCCCTATCATTGAACGGTATATTTTACCTGGAACAACAATCATATCTGA
TTGCTGGAAAGCTTATGACTGTCTGTCTCAGAAGGATTACGAACATTTGA
AGGTAAACCACTCTGTTGAATTCGTTAACAGTAACGGAGATCATACCAAT
AAAATTGAGGGTCACTGGcgtcaagtgaaaaaaaatttgcctccTTTTGG
TGTCAAGAAATATCTCTTTTCATCTCACCTGGCTGAGTTCATGTGGCGGT
ACACCCATAAAGAGTCANATATCTGAATGCGATTAATCCCAACAAACCAT
AAGAAAATTTATCCTTTTAGAATGAAACCGGTAATGAAAAGATCACGCGG
CTCTCAAACTGATGGATTTAATATGGACAAGCCAAAAAAGATGACTGTCG
ATACCTCAACACAGATTTCTTCTTCAACTGGTAGTTATAAAAGAAACAGA
ATTATAAATGACCTTGATAAAGAAGGAATGACAATAAGAAAACTTTACAC
CGAGGTAATATGTAATAAAGAGACAGCTATCCGATGGGCAATGGATAATG
GCTTGATTGCTTCGTCAATGAAATGCTCATTTTGTTCCAGTGATATGGAC
TTAAAAGATGCACAAAATTATTCATCTGATGGGTGTAGGTGGCGCTGTAG
AAAAAAAGACCATAGCAGCGAAGCTTCCATTCGAAAAGGATCgtggtttg
aaaaatctaatttgACGTTAGAAGAAATCATTGAATTAACTTATTGGTGG
TCAACTGgttGTGAACAAACACAAGTTTGTAAAGAGATGGGAGTCAGTAG
TAAAACAGCAGTCGACTGGTATAGTTTCTGCAGAGAAGTGTGCGAGGTGA
TAATAATGGTCCATAGCAAGCCTATTGGTGGTCCAGgTACCCGTGTTCAA
ATTGACGAATCTAAATTTGGAAAGCGGAAGTACCACCGTGGTCATAAAGT
AGAAGGTCAATGGGTGTTTGGTGGAATTGAGGAAGAAAGTAGGCAAAACT
TTATGGTTGCTGTGGAAAAAAGGGATAAGAAGACCCTCATCCCTATCATT
GAACGGTATATTTTACCTGGAACAACAATCATATCTGATTGCTGGAAAGC
TTATGACTGTCTGTCTCAGAAGGATTACGAACATTTGAAGGTAAACCACT
CTGTTGAATTCGTTAACAGTAACGGAGATCATACCAATAAAATTGAGGGT
CACTGGcgtcaagtgaaaaaaaatttgcctccTTTTGGTGTCAAGAAATA
TCTCTTTTCATCTCACCTGGCTGAGTTCATGTGGCGGTACACCCATAAAG
AGTCANATATCTGAATGCGATTAATCCCAACAAACCATAAGAAAATTTAT
CCTTTTAGAATGAAACCGGTAATGAAAAGATCACGCGGCTCTCAAACTGA
TGGATTTAATATGGACAAGCCAAAAAAGATGACTGTCGATACCTCAACAC
AGATTTCTTCTTCAACTGGTAGTTATAAAAGAAACAGAATTATAAATGAC
CTTGATAAAGAAGGAATGACAATAAGAAAACTTTACACCGAGGTAATATG
TAATAAAGAGACAGCTATCCGATGGGCAATGGATAATGGCTTGATTGCTT
CGTCAATGAAATGCTCATTTTGTTCCAGTGATATGGACTTAAAAGATGCA
CAAAATTATTCATCTGATGGGTGTAGGTGGCGCTGTAGAAAAAAAGACCA
TAGCAGCGAAGCTTCCATTCGAAAAGGATCgtggtttgaaaaatctaatt
tgACGTTAGAAGAAATCATTGAATTAACTTATTGGTGGTCAACTGgttGT
GAACAAACACAAGTTTGTAAAGAGATGGGAGTCAGTAGTAAAACAGCAGT
CGACTGGTATAGTTTCTGCAGAGAAGTGTGCGAGGTGATAATAATGGTCC
ATAGCAAGCCTATTGGTGGTCCAGgTACCCGTGTTCAAATTGACGAATCT
AAATTTGGAAAGCGGAAGTACCACCGTGGTCATAAAGTAGAAGGTCAATG
GGTGTTTGGTGGAATTGAGGAAGAAAGTAGGCAAAACTTTATGGTTGCTG
TGGAAAAAAGGGATAAGAAGACCCTCATCCCTATCATTGAACGGTATATT
TTACCTGGAACAACAATCATATCTGATTGCTGGAAAGCTTATGACTGTCT
GTCTCAGAAGGATTACGAACATTTGAAGGTAAACCACTCTGTTGAATTCG
TTAACAGTAACGGAGATCATACCAATAAAATTGAGGGTCACTGGcgtcaa
gtgaaaaaaaatttgcctccTTTTGGTGTCAAGAAATATCTCTTTTCATC
TCACCTGGCTGAGTTCATGTGGCGGTACACCCATAAAGAGTCANATATCT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042885-exon-sc0003755-1491911889:2931..3421 | TCONS_00042885-exon-sc0003755-1491911889:2931..3421 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1510915933:2931..3421 | TCONS_00042885-exon-sc0003755-1510915933:2931..3421 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1575043694:2931..3421 | TCONS_00042885-exon-sc0003755-1575043694:2931..3421 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1491911889:3589..3717 | TCONS_00042885-exon-sc0003755-1491911889:3589..3717 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1510915933:3589..3717 | TCONS_00042885-exon-sc0003755-1510915933:3589..3717 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1575043694:3589..3717 | TCONS_00042885-exon-sc0003755-1575043694:3589..3717 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1491911889:3924..4177 | TCONS_00042885-exon-sc0003755-1491911889:3924..4177 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1510915933:3924..4177 | TCONS_00042885-exon-sc0003755-1510915933:3924..4177 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1575043694:3924..4177 | TCONS_00042885-exon-sc0003755-1575043694:3924..4177 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1491911889:4304..4529 | TCONS_00042885-exon-sc0003755-1491911889:4304..4529 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1510915933:4304..4529 | TCONS_00042885-exon-sc0003755-1510915933:4304..4529 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1575043694:4304..4529 | TCONS_00042885-exon-sc0003755-1575043694:4304..4529 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1491911889:4656..5021 | TCONS_00042885-exon-sc0003755-1491911889:4656..5021 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1510915933:4656..5021 | TCONS_00042885-exon-sc0003755-1510915933:4656..5021 | Clytia hemisphaerica | exon |
| TCONS_00042885-exon-sc0003755-1575043694:4656..5021 | TCONS_00042885-exon-sc0003755-1575043694:4656..5021 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003755 | supercontig | sc0003755:2931..5021 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024445 | Tnp_ISXO2-like |
Blast
The following BLAST results are available for this feature:
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