TCONS_00042883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042883
Unique NameTCONS_00042883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042883 ID=TCONS_00042883|Name=TCONS_00042883|organism=Clytia hemisphaerica|type=transcript|length=799bp
acACAGGTTTCGGATCTACCGTCTTAATTAAAATATCGTACCCCGTACAA
GTCGTTAATTGTTGGTTCAGCCAAATTTCCTAAAAAAGGtaagaaaactt
taaattttcgtCAAAAGTAAATCACGCTTTGGTTGGGCACGAAGTGAACA
GTGAATTTGAAAAGGTATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGG
TTCGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGA
ACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGAACAgtcttttgaaaaa
gatttgggCACGAAGTGAACAGTGAATTTTGAAAAGGGTTCGGGCACGAA
GTGAACAGTGAATTTTAAAAAGGGTTTGGGTACGAAGTGAAcagtgaatt
ttgaaaaattttgctgcGCCATTAAATAACGAGTCTTTTTTTTCACACAG
GTTTCGGATCTACCGTCTTAATAAAAATATCGTACCCCGTACAAGTCGTT
AACTGTTGGTTCagccaaattttctaaaaaaggtaagaaaactttaaatt
ttcgcAAAAAGTAAATCACCCCTCTTTGGTTGGGCACGAAGTGAACAGTG
ATTTTGAAAAGGTATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTC
GGGCACGAAATGAACAgtgttttgaaaaaggtttgGGCACGAAGTGAAca
gtgaattttgaaaaattttgctcCGCCATTAAATAACGAttttttttttc
acacagGTTTCGGATCTACCGTCTTAATTAAAATATCGTACCCCGTACA
Run BLAST on NCBI

transcript from alignment at sc0003755:71..1360+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042883 ID=TCONS_00042883|Name=TCONS_00042883|organism=Clytia hemisphaerica|type=transcript|length=1290bp|location=Sequence derived from alignment at sc0003755:71..1360+ (Clytia hemisphaerica)
acACAGGTTTCGGATCTACCGTCTTAATTAAAATATCGTACCCCGTACAA
GTCGTTAATTGTTGGTTCAGCCAAATTTCCTAAAAAAGGtaagaaaactt
taaattttcgtCAAAAGTAAATCACGCTTTGGTTGGGCACGAAGTGAACA
GTGAATTTGAAAAGGTATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGG
TTCGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGA
ACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGAACAgtcttttgaaaaa
gatttgggCACGAAGTGAACAGTGAATTTTGAAAAGGGTTCGGGCACGAA
GTGAACAGTGAATTTTAAAAAGGGTTTGGGTACGAAGTGAAcagtgaatt
ttgaaaaattttgctgcGCCATTAAATAACGAGTCTTTTTTTTCACACAG
GTTTCGGATCTACCGTCTTAATAAAAATATCGTACCCCGTACAAGTCGTT
AACTGTTGGTTCagccaaattttctaaaaaaggtaagaaaactttaaatt
ttcgcAAAAAGTAAATCACCCCTCTTTGGTTGGGCACGAAGTGAACAGTG
ATTTTGAAAAGGTATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTC
GGGCACGAAATGAACAgtgttttgaaaaaggtttgGGCACGAAGTGAAca
gtgaattttgaaaaattttgctcCGCCATTAAATAACGAGTCTTTCTTTT
TCCACACAGGTTTCGGATCTACCGTCTTAATTANAAATTTTGGTCCGCCA
TTAAATaacgagttttttttttcacacaggTTTCGGATCTATCGTCTTAA
TTGAAATATCGTACCCCGTACAAGTCGTTTATTGTTGGTTCaaccaaatt
ttctaaaaaaggtaggaaaactttaaattttcgcAAAAAGTAAATCAGGG
CACGAAGTGAACAGTCTTTTTTAAAGGGTTCGGGCACGAAGTGAAcggtg
aattttgaaaaattttggtccGCCATTAAATaacgagttttttttttcac
acaggTTTCGGATCTATCGTCTTAATTGAAATATCGTACCCCGTACAAGT
CGTTTATTGTTGGTTcaatcaaattttctaaaaaaggtaggaaaacttta
aattttcgcAAAAAGTAAATCAGGGCACGAAGTGAAcagtgaattttgaa
aaattttgctcCGCCATTAAATAACGAGTCTTTTTTTTTCCACACAGGTT
TCGGATCTACCGTCTTAATTAAAATATCGTACCCCGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026659XLOC_026659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042883-exon-sc0003755-1491911889:71..809TCONS_00042883-exon-sc0003755-1491911889:71..809Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1510915933:71..809TCONS_00042883-exon-sc0003755-1510915933:71..809Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1575043694:71..809TCONS_00042883-exon-sc0003755-1575043694:71..809Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1491911889:883..899TCONS_00042883-exon-sc0003755-1491911889:883..899Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1510915933:883..899TCONS_00042883-exon-sc0003755-1510915933:883..899Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1575043694:883..899TCONS_00042883-exon-sc0003755-1575043694:883..899Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1491911889:1318..1360TCONS_00042883-exon-sc0003755-1491911889:1318..1360Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1510915933:1318..1360TCONS_00042883-exon-sc0003755-1510915933:1318..1360Clytia hemisphaericaexon
TCONS_00042883-exon-sc0003755-1575043694:1318..1360TCONS_00042883-exon-sc0003755-1575043694:1318..1360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003755supercontigsc0003755:71..1360 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.340421	0.13322	0.245372	0	0.650789	0.0354996	0	0.286179	0.426451	0	0	0	0.268712	0.184912	0.388897	0.14495	0.0730967	0	0	0.270166	0	0.117984	0.843466	0	0	0.54837	0.00588202	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top