|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042880 ID=TCONS_00042880|Name=TCONS_00042880|organism=Clytia hemisphaerica|type=transcript|length=477bp
cgagtcttttttttttccacACAGGTTTCGGATCTACCGTCTTAATTAAA
ATATCGTACCCCGTACAAGTCGTTAATTGTTGGTTCAGCCAAATTTCCTA
AAAAAGGtaagaaaactttaaattttcgtCAAAAGTAAATCACGCTTTGG
TTGGGCACGAAGTGAACAGTGAATTTGAAAAGGTATAGGGCACGAAGTGA
ACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGAACAGTCTTTTGAAAAG
GGTTCGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAGT
GAACAgtcttttgaaaaagatttgggCACGAAGTGAACAGTGAATTTTGA
AAAGGgtttgGGCACGAAGTGAAcagtgaattttgaaaaattttgctcCG
CCATTAAATAACGAGTCTTTCTTTTTCCACACAGGTTTCGGATCTACCGT
CTTAATTAAAATATCGTACCCCGTACA Run BLAST on NCBI transcript from alignment at sc0003755:53..1360+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042880 ID=TCONS_00042880|Name=TCONS_00042880|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at sc0003755:53..1360+ (Clytia hemisphaerica)
cgagtcttttttttttccacACAGGTTTCGGATCTACCGTCTTAATTAAA
ATATCGTACCCCGTACAAGTCGTTAATTGTTGGTTCAGCCAAATTTCCTA
AAAAAGGtaagaaaactttaaattttcgtCAAAAGTAAATCACGCTTTGG
TTGGGCACGAAGTGAACAGTGAATTTGAAAAGGTATAGGGCACGAAGTGA
ACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGAACAGTCTTTTGAAAAG
GGTTCGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAGT
GAACAgtcttttgaaaaagatttgggCACGAAGTGAACAGTGAATTTTGA
AAAGGGTTCGGGCACGAAGTGAACAGTGAATTTTAAAAAGGGTTTGGGTA
CGAAGTGAAcagtgaattttgaaaaattttgctgcGCCATTAAATAACGA
GTCTTTTTTTTCACACAGGTTTCGGATCTACCGTCTTAATAAAAATATCG
TACCCCGTACAAGTCGTTAACTGTTGGTTCagccaaattttctaaaaaag
gtaagaaaactttaaattttcgcAAAAAGTAAATCACCCCTCTTTGGTTG
GGCACGAAGTGAACAGTGATTTTGAAAAGGTATAGGGCACGAAGTGAACA
GTCTTTTGAAAAGGGTTCGGGCACGAAATGAACAgtgttttgaaaaaggt
ttgGGCACGAAGTGAAcagtgaattttgaaaaattttgctcCGCCATTAA
ATAACGAGTCTTTCTTTTTCCACACAGGTTTCGGATCTACCGTCTTAATT
ANAAATTTTGGTCCGCCATTAAATaacgagttttttttttcacacaggTT
TCGGATCTATCGTCTTAATTGAAATATCGTACCCCGTACAAGTCGTTTAT
TGTTGGTTCaaccaaattttctaaaaaaggtaggaaaactttaaattttc
gcAAAAAGTAAATCAGGGCACGAAGTGAACAGTCTTTTTTAAAGGGTTCG
GGCACGAAGTGAAcggtgaattttgaaaaattttggtccGCCATTAAATa
acgagttttttttttcacacaggTTTCGGATCTATCGTCTTAATTGAAAT
ATCGTACCCCGTACAAGTCGTTTATTGTTGGTTcaatcaaattttctaaa
aaaggtaggaaaactttaaattttcgcAAAAAGTAAATCAGGGCACGAAG
TGAAcagtgaattttgaaaaattttgctcCGCCATTAAATAACGAGTCTT
TTTTTTTCCACACAGGTTTCGGATCTACCGTCTTAATTAAAATATCGTAC
CCCGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042880-exon-sc0003755-1491911889:53..407 | TCONS_00042880-exon-sc0003755-1491911889:53..407 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1510915933:53..407 | TCONS_00042880-exon-sc0003755-1510915933:53..407 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1575043694:53..407 | TCONS_00042880-exon-sc0003755-1575043694:53..407 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1491911889:751..829 | TCONS_00042880-exon-sc0003755-1491911889:751..829 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1510915933:751..829 | TCONS_00042880-exon-sc0003755-1510915933:751..829 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1575043694:751..829 | TCONS_00042880-exon-sc0003755-1575043694:751..829 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1491911889:1318..1360 | TCONS_00042880-exon-sc0003755-1491911889:1318..1360 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1510915933:1318..1360 | TCONS_00042880-exon-sc0003755-1510915933:1318..1360 | Clytia hemisphaerica | exon |
| TCONS_00042880-exon-sc0003755-1575043694:1318..1360 | TCONS_00042880-exon-sc0003755-1575043694:1318..1360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003755 | supercontig | sc0003755:53..1360 + |
Blast
The following BLAST results are available for this feature:
|
