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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042879 ID=TCONS_00042879|Name=TCONS_00042879|organism=Clytia hemisphaerica|type=transcript|length=881bp
ctcCGCCATTAAATAAcgagtcttttttttttccacACAGGTTTCGGATC
TACCGTCTTAATTAAAATATCGTACCCCGTACAAGTCGTTAATTGTTGGT
TCAGCCAAATTTCCTAAAAAAGgTTTCGGATCTATCGTCTTAATTGAAAT
ATCGTACGTAATTTTCGTCTGAAAAATCGAGGAGCCGATACTAAGATTGA
GGTATTTATATTTATGAATGTTTATCTGAAATTAGTTTATAAAACCatat
attaaatttttatttacgaTTCATTCTTCAGATTGTTCAAGAGATTTCTA
CCGAGGAGAGACGTGTAAAAACGAAATCACAGCCAACGCCACAAGACATA
AAAAAGGCAATCCTTTTAACCTCTGGTCCTGTTGTGACATTACGTACTTT
TTCCCATTATGCACCAAATGATTTACGTAAATCCATCCTCAAGCACGAAT
TCGTATTGGCGTGTAATTTGTTACAAGCGGAGGAATTGGGTCGACTCGTT
ACTATCATATCTCCAGGCAACTTTGCAAAATCTCAAGTGTTTAtcaaatc
atcaaatttacCTAGAGATTTTAACATGGTGGACCACGCTGAATATAACA
GAAAGAGACTCCTGtccatttcaaaaaaatctttagcTACTTCTATAAGA
GAAGTGCTAACGCAACAATATGGGGTAGAATTTTAGATTTGACATTAACA
CCCGTATGTTTGCGATTACTACATTTGTTTGGTAAtgtttaatttgaaat
atttctctGCTTTGCCGTAGCTAATTGTTCATCTACTTTGAGTTGATTAA
AGATTGTTAAAAATGTGCCATTTAAATGTGGTGTGCAGACCTATCTTAAT
TTATTATATCAGTTCGGCAAAGCTGTCATAT Run BLAST on NCBI transcript from alignment at sc0003755:37..2534+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042879 ID=TCONS_00042879|Name=TCONS_00042879|organism=Clytia hemisphaerica|type=transcript|length=2498bp|location=Sequence derived from alignment at sc0003755:37..2534+ (Clytia hemisphaerica)
ctcCGCCATTAAATAAcgagtcttttttttttccacACAGGTTTCGGATC
TACCGTCTTAATTAAAATATCGTACCCCGTACAAGTCGTTAATTGTTGGT
TCAGCCAAATTTCCTAAAAAAGGtaagaaaactttaaattttcgtCAAAA
GTAAATCACGCTTTGGTTGGGCACGAAGTGAACAGTGAATTTGAAAAGGT
ATAGGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGA
ACAGTCTTTTGAAAAGGGTTCGGGCACGAAGTGAACAGTCTTTTGAAAAG
GGTTCGGGCACGAAGTGAACAgtcttttgaaaaagatttgggCACGAAGT
GAACAGTGAATTTTGAAAAGGGTTCGGGCACGAAGTGAACAGTGAATTTT
AAAAAGGGTTTGGGTACGAAGTGAAcagtgaattttgaaaaattttgctg
cGCCATTAAATAACGAGTCTTTTTTTTCACACAGGTTTCGGATCTACCGT
CTTAATAAAAATATCGTACCCCGTACAAGTCGTTAACTGTTGGTTCagcc
aaattttctaaaaaaggtaagaaaactttaaattttcgcAAAAAGTAAAT
CACCCCTCTTTGGTTGGGCACGAAGTGAACAGTGATTTTGAAAAGGTATA
GGGCACGAAGTGAACAGTCTTTTGAAAAGGGTTCGGGCACGAAATGAACA
gtgttttgaaaaaggtttgGGCACGAAGTGAAcagtgaattttgaaaaat
tttgctcCGCCATTAAATAACGAGTCTTTCTTTTTCCACACAGGTTTCGG
ATCTACCGTCTTAATTANAAATTTTGGTCCGCCATTAAATaacgagtttt
ttttttcacacaggTTTCGGATCTATCGTCTTAATTGAAATATCGTACCC
CGTACAAGTCGTTTATTGTTGGTTCaaccaaattttctaaaaaaggtagg
aaaactttaaattttcgcAAAAAGTAAATCAGGGCACGAAGTGAACAGTC
TTTTTTAAAGGGTTCGGGCACGAAGTGAAcggtgaattttgaaaaatttt
ggtccGCCATTAAATaacgagttttttttttcacacaggTTTCGGATCTA
TCGTCTTAATTGAAATATCGTACCCCGTACAAGTCGTTTATTGTTGGTTc
aatcaaattttctaaaaaaggtaggaaaactttaaattttcgcAAAAAGT
AAATCAGGGCACGAAGTGAAcagtgaattttgaaaaattttgctcCGCCA
TTAAATAACGAGTCTTTTTTTTTCCACACAGGTTTCGGATCTACCGTCTT
AATTAAAATATCGTACCCCGTACAAGTCGCTAATTGTTGGTTCAGCCAAA
TTTTCTNattttctaaaaaaggtaggaaaactttaaattttcgcAAAAAG
TAAATCAGGGCACGAAGTGAACAGTCTTTTTTAAAGGGTTCGGGCACGAA
GTGAAcagtgaattttgaaaaattttggtccGCCATTAAATaacgagttt
tttttttcacacaggTTTCGGATCTATCGTCTTAATTGAAATATCGTACC
CCGTACAAGTCGTTTATTGTTGGTTCaaccaaattttctaaaaaaggtag
gaaaactttaaattttcgcAAAAAGTAAATCAGGGCACGAAGTGAACAGT
CTTTTTTAAAGGGTTCGGGCACGAAGTGAAcagtgaattttgaaaaattt
tggtccGCCATTAAATaacgagttttttttttcacacaggTTTCGGATCT
ATCGTCTTAATTGAAATATCGTACGTAATTTTCGTCTGAAAAATCGAGGA
GCCGATACTAAGATTGAGGTATTTATATTTATGAATGTTTATCTGAAATT
AGTTTATAAAACCatatattaaatttttatttacgaTTCATTCTTCAGAT
TGTTCAAGAGATTTCTACCGAGGAGAGACGTGTAAAAACGAAATCACAGC
CAACGCCACAAGACATAAAAAAGGCAATCCTTTTAACCTCTGGTCCTGTT
GTGACATTACGTACTTTTTCCCATTATGCACCAAATGATTTACGTAAATC
CATCCTCAAGCACGAATTCGTATTGGCGTGTAATTTGTTACAAGCGGAGG
AATTGGGTCGACTCGTTACTATCATATCTCCAGGCAACTTTGCAAAATCT
CAAGTGTTTAtcaaatcatcaaatttacCTAGAGATTTTAACATGGTGGA
CCACGCTGAATATAACAGAAAGAGACTCCTGtccatttcaaaaaaatctt
tagcTACTTCTATAAGAGAAGTGCTAACGCAACAATATGGGGTAGAATTT
TAGATTTGACATTAACACCCGTATGTTTGCGATTACTACATTTGTTTGGT
AAtgtttaatttgaaatatttctctGCTTTGCCGTAGCTAATTGTTCATC
TACTTTGAGTTGATTAAAGATTGTTAAAAATGTGCCATTTAAATGTGGTG
TGCAGACCTATCTTAATTTATTATATCAGTTCGGCAAAGCTGTCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042879-exon-sc0003755-1491911889:37..158 | TCONS_00042879-exon-sc0003755-1491911889:37..158 | Clytia hemisphaerica | exon |
| TCONS_00042879-exon-sc0003755-1510915933:37..158 | TCONS_00042879-exon-sc0003755-1510915933:37..158 | Clytia hemisphaerica | exon |
| TCONS_00042879-exon-sc0003755-1575043694:37..158 | TCONS_00042879-exon-sc0003755-1575043694:37..158 | Clytia hemisphaerica | exon |
| TCONS_00042879-exon-sc0003755-1491911889:1776..2534 | TCONS_00042879-exon-sc0003755-1491911889:1776..2534 | Clytia hemisphaerica | exon |
| TCONS_00042879-exon-sc0003755-1510915933:1776..2534 | TCONS_00042879-exon-sc0003755-1510915933:1776..2534 | Clytia hemisphaerica | exon |
| TCONS_00042879-exon-sc0003755-1575043694:1776..2534 | TCONS_00042879-exon-sc0003755-1575043694:1776..2534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003755 | supercontig | sc0003755:37..2534 + |
Blast
The following BLAST results are available for this feature:
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