TCONS_00042873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042873
Unique NameTCONS_00042873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042873 ID=TCONS_00042873|Name=TCONS_00042873|organism=Clytia hemisphaerica|type=transcript|length=305bp
caaattcatgtaaaaaaaacaatgaatttgGCATCTGACATGAACGCATC
TCAAAAGCAGACAGAAGAATTATTAATTTATGTTGGCGNATTGACAGTGA
CAATAATAGCATACTTGATGATAACTCTCAAAGTAACAATAATACTGACG
TCAATAATGATGACGACATTCTTTCCAATAATACTAATAGCAGCAATAAC
ATGAACGAAAACATTGATGACAGTGTTGTCAGTAACCAAGATGAAAGCAA
TGACGAGGAAGTTCAAAGAGATGAAGGAGAAAATTGTGGGGGTGCACCAC
TACCA
Run BLAST on NCBI

transcript from alignment at sc0003753:447..751

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042873 ID=TCONS_00042873|Name=TCONS_00042873|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0003753:447..751 (Clytia hemisphaerica)
TGGTAGTGGTGCACCCCCACAATTTTCTCCTTCATCTCTTTGAACTTCCT
CGTCATTGCTTTCATCTTGGTTACTGACAACACTGTCATCAATGTTTTCG
TTCATGTTATTGCTGCTATTAGTATTATTGGAAAGAATGTCGTCATCATT
ATTGACGTCAGTATTATTGTTACTTTGAGAGTTATCATCAAGTATGCTAT
TATTGTCACTGTCAATNCGCCAACATAAATTAATAATTCTTCTGTCTGCT
TTTGAGATGCGTTCATGTCAGATGCcaaattcattgttttttttacatga
atttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026656XLOC_026656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042873-exon-sc0003753-1491911889:447..751TCONS_00042873-exon-sc0003753-1491911889:447..751Clytia hemisphaericaexon
TCONS_00042873-exon-sc0003753-1510915933:447..751TCONS_00042873-exon-sc0003753-1510915933:447..751Clytia hemisphaericaexon
TCONS_00042873-exon-sc0003753-1575043694:447..751TCONS_00042873-exon-sc0003753-1575043694:447..751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003753supercontigsc0003753:447..751 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36927	1.80048	0	0	0.995961	0.393511	1.42426	1.33338	1.24471	3.46898	0.37412	1.72152	1.22795	2.55047	1.88715	1.12511	3.0493	3.97783	1.17763	3.28613	1.07109	3.13465	0.846794	3.07944	0	0.707677	3.54439	3.24229	4.50846	3.75825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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