TCONS_00042871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042871
Unique NameTCONS_00042871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042871 ID=TCONS_00042871|Name=TCONS_00042871|organism=Clytia hemisphaerica|type=transcript|length=1481bp
ttggaggaatcgtttagggccctggtactttagaagagaaaatatcaaga
atcttgatatttttcgacctttggactctGGCAGCTTGAGTGTGGGCAAT
ATGGTGCGAAGACAAGTACAGCCGAGCTGCGAGCACACTTACTAAATCAG
ATTATTACACTATTCAATAGCATTGTTGTACCCAAACTTCTATACGGTCT
AGAACTTGTGACTCTTACAAAATCAGAAGCTGAACATCTTAATACTCAAG
CAAGAATGTGTCTTAAGTCACTTTTCGGTGTATCTAAACGATCAAGGAAC
TTACTGAACAAACTATACAACCTAGCTGACATTACCACCCTCATAGATAG
CAGAAGACTTAGGCTACTCAGCCAAATCATTCACAACAAATCAGTTGCTC
CATACATCTTTCATCTACTAACTACGAATATGAACATAGACTTCAGCTAC
GTACACTCTACTAACAGAATTATAAATCGAGAAAATTTGAACATTTACAC
ATTGCTGTTGAATAAAAGTTATACTTTTAAAACTGAAGTTATTGAAATTT
CTGATGAAGTTGAGGAATGcatttattatataaaaaattggcatattttt
gaaaatagactTTCATTCAGAGCTAAGCTGGAAGAAAATATTGTGTGGTC
GTAGATTTTCTCACTGCCTTGCTCTTATATCTACAACATACAATATTCTC
TCTTCCACCTTTTCTCTTGAAATGATATCTTTTTAGAACGGGCAGCCCAG
TCTAGATTTtctgttgttgttttgattCCATCGTTCATACATTTTGCAGA
CTCTGATTCCCCGTAATTTCTTGTTCTGGCTTTTTTTTTCGAGTTGCTTG
GTGATTCCCTCGCTGATGATCTCAGCCGGCCTCTTATTTTGACACTTTGA
TGATTCCCATGTTAGACTGTTATCTTACTCTCTTTATCTCCTTACCGTTT
GGGCGGCCTTACAGTCTATATTTTTCAGTAAACATAGTATATATTTTGTT
CcgaaaacagaaaatttttaaatgtacataaaaGGAAAGAGCTTTATACT
TAGTTTTAGATATTTATATACCATTGATTttcttggtgataaaagagatg
ttaataataaaaaaattatcattcattttttccatttcagCTACATGCGA
ACTTGCCTCAAAAATCACAAGGCGAACGTGCTCGACAAGATCTCGAAAGA
TGAAATTAGGTCAGAACTTTCCCTGCGTGGTATTAAGTTTTTGATGGACG
ATTTGAAGCCTGCCCTCTTAGCAAAACTGGTAGAAGAAATGGCCGGCATC
CATCGCTTGCCAGCACTGTTAAGAAACAAAATCGACCCTGATTTTTACAA
TTTGTTACTACAGATAATCGAGATACAGGAGATTATTTACTTAAATGAAG
TCCACCGAACCAACGCTAAGGTATTCCGATATCTCAACCAGTCATTTCTT
CATTTGGTTGCAATGGAAGAACTAATGCCAC
Run BLAST on NCBI

protein sequence of TCONS_00042871-protein

>TCONS_00042871-protein ID=TCONS_00042871-protein|Name=TCONS_00042871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MYIKGKSFILSFRYLYTIDFLGDKRDVNNKKIIIHFFHFSYMRTCLKNHK
ANVLDKISKDEIRSELSLRGIKFLMDDLKPALLAKLVEEMAGIHRLPALL
RNKIDPDFYNLLLQIIEIQEIIYLNEVHRTNAKVFRYLNQSFLHLVAMEE
LMP
Run BLAST on NCBI

transcript from alignment at sc0003752:60..1695+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042871 ID=TCONS_00042871|Name=TCONS_00042871|organism=Clytia hemisphaerica|type=transcript|length=1636bp|location=Sequence derived from alignment at sc0003752:60..1695+ (Clytia hemisphaerica)
ttggaggaatcgtttagggccctggtactttagaagagaaaatatcaaga
atcttgatatttttcgacctttggactctGGCAGCTTGAGTGTGGGCAAT
ATGGTGCGAAGACAAGTACAGCCGAGCTGCGAGCACACTTACTAAATCAG
ATTATTACACTATTCAATAGCATTGTTGTACCCAAACTTCTATACGGTCT
AGAACTTGTGACTCTTACAAAATCAGAAGCTGAACATCTTAATACTCAAG
CAAGAATGTGTCTTAAGTCACTTTTCGGTGTATCTAAACGATCAAGGAAC
TTACTGAACAAACTATACAACCTAGCTGACATTACCACCCTCATAGATAG
CAGAAGACTTAGGCTACTCAGCCAAATCATTCACAACAAATCAGTTGCTC
CATACATCTTTCATCTACTAACTACGAATATGAACATAGACTTCAGCTAC
GTACACTCTACTAACAGAATTATAAATCGAGAAAATTTGAACATTTACAC
ATTGCTGTTGAATAAAAGTTATACTTTTAAAACTGAAGTTATTGAAATTT
CTGATGAAGTTGAGGAATGcatttattatataaaaaattggcatattttt
gaaaatagactTTCATTCAGAGCTAAGCTGGAAGAAAATATTGTGTGGTC
GTAGATTTTCTCACTGCCTTGCTCTTATATCTACAACATACAATATTCTC
TCTTCCACCTTTTCTCTTGAAATGATATCTTTTTAGAACGGGCAGCCCAG
TCTAGATTTtctgttgttgttttgattCCATCGTTCATACATTTTGCAGA
CTCTGATTCCCCGTAATTTCTTGTTCTGGCTTTTTTTTTCGAGTTGCTTG
GTGATTCCCTCGCTGATGATCTCAGCCGGCCTCTTATTTTGACACTTTGA
TGATTCCCATGTTAGACTGTTATCTTACTCTCTTTATCTCCTTACCGTTT
GGGCGGCCTTACAGTCTATATTTTTCAGTAAACATAGTATATATTTTGTT
CcgaaaacagaaaatttttaaatgtacataaaaGGAAAGAGCTTTATACT
TAGTTTTAGATATTTATATACCATTGATTttcttggtgataaaagagatg
ttaataataaaaaaattatcattcattttttccatttcagCTACATGCGA
ACTTGCCTCAAAAATCACAAGGCGAACGTGCTCGACAAGATCTCGAAAGA
TGAAATTAGGTCAGAACTTTCCCTGCGTGGTATTAAGTTTTTGATGGACG
ATTTGAAGCCTGCCCTCTTAGCAAAACTGGTAGAAGAAATGGCCGGCATC
CATCGCTTGCCAGCACTGTTAAGAAACAAAATCGACCCTGATTTTTACAA
TTTGTTACTACAGATAATCGAGATACAGGAGATTATTTACTTAAATGAAG
TCCACCGAACCAACGCTAAGgtatataaaatttaaaaagaattgaGCTAT
TTTAGCCGATGCTGAGAGCGTAACTACCAAACTAACCACCCGTAATCCTC
ATGCCATATTGAAGTCCTAAGTACTGACtgcaaaataaattaaaaaagct
GTGttaaattctgaattttttaaagGTATTCCGATATCTCAACCAGTCAT
TTCTTCATTTGGTTGCAATGGAAGAACTAATGCCAC

Coding sequence (CDS) from alignment at sc0003752:60..1695+

>TCONS_00042871 ID=TCONS_00042871|Name=TCONS_00042871|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0003752:60..1695+ (Clytia hemisphaerica)
atgtacataaaaGGAAAGAGCTTTATACTTAGTTTTAGATATTTATATAC
CATTGATTttcttggtgataaaagagatgttaataataaaaaaattatca
ttcattttttccatttcagCTACATGCGAACTTGCCTCAAAAATCACAAG
GCGAACGTGCTCGACAAGATCTCGAAAGATGAAATTAGGTCAGAACTTTC
CCTGCGTGGTATTAAGTTTTTGATGGACGATTTGAAGCCTGCCCTCTTAG
CAAAACTGGTAGAAGAAATGGCCGGCATCCATCGCTTGCCAGCACTGTTA
AGAAACAAAATCGACCCTGATTTTTACAATTTGTTACTACAGATAATCGA
GATACAGGAGATTATTTACTTAAATGAAGTCCACCGAACCAACGCTAAGG
TATTCCGATATCTCAACCAGTCATTTCTTCATTTGGTTGCAATGGAAGAA
CTAATGCCAatgtacataaaaGGAAAGAGCTTTATACTTAGTTTTAGATA
TTTATATACCATTGATTttcttggtgataaaagagatgttaataataaaa
aaattatcattcattttttccatttcagCTACATGCGAACTTGCCTCAAA
AATCACAAGGCGAACGTGCTCGACAAGATCTCGAAAGATGAAATTAGGTC
AGAACTTTCCCTGCGTGGTATTAAGTTTTTGATGGACGATTTGAAGCCTG
CCCTCTTAGCAAAACTGGTAGAAGAAATGGCCGGCATCCATCGCTTGCCA
GCACTGTTAAGAAACAAAATCGACCCTGATTTTTACAATTTGTTACTACA
GATAATCGAGATACAGGAGATTATTTACTTAAATGAAGTCCACCGAACCA
ACGCTAAGGTATTCCGATATCTCAACCAGTCATTTCTTCATTTGGTTGCA
ATGGAAGAACTAATGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026654XLOC_026654Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042871-proteinTCONS_00042871-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042871-exon-sc0003752-1491911889:60..1479TCONS_00042871-exon-sc0003752-1491911889:60..1479Clytia hemisphaericaexon
TCONS_00042871-exon-sc0003752-1510915933:60..1479TCONS_00042871-exon-sc0003752-1510915933:60..1479Clytia hemisphaericaexon
TCONS_00042871-exon-sc0003752-1575043694:60..1479TCONS_00042871-exon-sc0003752-1575043694:60..1479Clytia hemisphaericaexon
TCONS_00042871-exon-sc0003752-1491911889:1635..1695TCONS_00042871-exon-sc0003752-1491911889:1635..1695Clytia hemisphaericaexon
TCONS_00042871-exon-sc0003752-1510915933:1635..1695TCONS_00042871-exon-sc0003752-1510915933:1635..1695Clytia hemisphaericaexon
TCONS_00042871-exon-sc0003752-1575043694:1635..1695TCONS_00042871-exon-sc0003752-1575043694:1635..1695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003752supercontigsc0003752:60..1695 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.530339	0.688338	0.573516	1.10375	9.7515	9.00611	9.89826	11.8952	4.54357	5.06323	4.10881	4.65196	4.21654	3.96373	2.26929	1.89079	2.15378	2.46645	1.52931	2.1504	2.41903	3.44739	1.28871	1.1175	1.34957	3.28122	1.97296	1.82356	1.12798	1.48843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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