TCONS_00042862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042862
Unique NameTCONS_00042862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042862 ID=TCONS_00042862|Name=TCONS_00042862|organism=Clytia hemisphaerica|type=transcript|length=337bp
ACCTAAAGCAGCTCCGATGCCCGCTTCAGCGATCAAGTTATGACCGCAAG
CATGTCCAACTCCAGGTAAGGCATCATATTCACAAATCACTCCAACTTTT
ATTCCTTCTTTTTTTCCATAACGAGCAATAAATGAAGTTTCCAAAGGAGT
GCTCTTTGATACTTCAAACCCTTTTTTTTCAAGATATGACGTCAGCAAGG
CATGTGCTTTAAATTCTTCGAAATTCACTTCaggatttttccaaatttct
tgACTGATATTGTTTAGTTCATCCTTCTTGGAGTCTATGGCTTCGCAAAT
GATctgtttcaattttcctttCATTTTTATCCTGAAA
Run BLAST on NCBI

protein sequence of TCONS_00042862-protein

>TCONS_00042862-protein ID=TCONS_00042862-protein|Name=TCONS_00042862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
FRIKMKGKLKQIICEAIDSKKDELNNISQEIWKNPEVNFEEFKAHALLTS
YLEKKGFEVSKSTPLETSFIARYGKKEGIKVGVICEYDALPGVGHACGHN
LIAEAGIGAALG
Run BLAST on NCBI

transcript from alignment at sc0003737:4570..4906

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042862 ID=TCONS_00042862|Name=TCONS_00042862|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0003737:4570..4906 (Clytia hemisphaerica)
TTTCAGGATAAAAATGaaaggaaaattgaaacagATCATTTGCGAAGCCA
TAGACTCCAAGAAGGATGAACTAAACAATATCAGTcaagaaatttggaaa
aatcctGAAGTGAATTTCGAAGAATTTAAAGCACATGCCTTGCTGACGTC
ATATCTTGAAAAAAAAGGGTTTGAAGTATCAAAGAGCACTCCTTTGGAAA
CTTCATTTATTGCTCGTTATGGAAAAAAAGAAGGAATAAAAGTTGGAGTG
ATTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTTGCGGTCATAA
CTTGATCGCTGAAGCGGGCATCGGAGCTGCTTTAGGT

Coding sequence (CDS) from alignment at sc0003737:4570..4906

>TCONS_00042862 ID=TCONS_00042862|Name=TCONS_00042862|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0003737:4570..4906 (Clytia hemisphaerica)
TTCAGGATAAAAATGaaaggaaaattgaaacagATCATTTGCGAAGCCAT
AGACTCCAAGAAGGATGAACTAAACAATATCAGTcaagaaatttggaaaa
atcctGAAGTGAATTTCGAAGAATTTAAAGCACATGCCTTGCTGACGTCA
TATCTTGAAAAAAAAGGGTTTGAAGTATCAAAGAGCACTCCTTTGGAAAC
TTCATTTATTGCTCGTTATGGAAAAAAAGAAGGAATAAAAGTTGGAGTGA
TTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTTGCGGTCATAAC
TTGATCGCTGAAGCGGGCATCGGAGCTGCTTTAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026645XLOC_026645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042862-exon-sc0003737-1491911889:4570..4906TCONS_00042862-exon-sc0003737-1491911889:4570..4906Clytia hemisphaericaexon
TCONS_00042862-exon-sc0003737-1510915933:4570..4906TCONS_00042862-exon-sc0003737-1510915933:4570..4906Clytia hemisphaericaexon
TCONS_00042862-exon-sc0003737-1575043694:4570..4906TCONS_00042862-exon-sc0003737-1575043694:4570..4906Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042862-proteinTCONS_00042862-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003737supercontigsc0003737:4570..4906 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.0339	33.3393	44.4066	44.6172	0.438106	1.55191	7.57171	8.79001	18.4262	10.2178	12.5577	12.455	9.70476	9.67668	11.3445	16.6626	7.11334	8.71176	6.06278	5.17107	19.1407	16.8783	23.5404	20.1732	6.64233	3.6114	11.8354	4.5113	13.6567	13.1878
Blast
[Close]
BLAST of TCONS_00042862 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.580e-17
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = -2 
Query:   37 LKQIICEAIDSKKDELNNISQEIWKNPEVNFEEFKAHALLTSYLEKK----GFEVSKSTPLETSFIARYGKKEG---------IKVGVICEYDALPGVGHACGHN 312
            LK    E ID   + L  +S+ IW  PE+ +EE  AH +LT + E++     + V     L T+F A +   E          + +G +CEYDALPG+GHACGHN
Sbjct:   23 LKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHN 127
The following BLAST results are available for this feature:
BLAST of TCONS_00042862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P20D24.580e-1738.10Peptidase M20 domain-containing protein 2 OS=Homo ... [more]
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