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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042860 ID=TCONS_00042860|Name=TCONS_00042860|organism=Clytia hemisphaerica|type=transcript|length=918bp
CAAGTAATTCCATCAAAGAGAAAGTCAAACATCTTGGATTCAGTCGTTAT
CGGATCGTCTCGATGGTTCACGTAGGTCAAAATTTACATCAAGGAACTTC
GATTGCCAGTAGAACTTTGATGGATAAAGAAAATGACGATTTTACAGAGT
TAACGATTGATTATGGACATTTCTTTGTGACTGCTGTTGTGTATGCTGTT
TACAAATTGTAAATGGAAtgtgggaaaaaataaatagaaagaagATTTAG
TCAAAGTCTGTTCCAGCCAAAAATGGCAATGGTCACATTTTAATACATTA
AAGGAAACCCTGGCTAAAGGAAACCTTGTACAAtacaatttaaaagaaaa
gccTCAGTTGGAACTATCTTTCCAACGCAGTATTACTTTAatcatttatt
attttattcGAGACCATTTTTTTAGACAATACTTCAGAAATGTAATATAT
GAATGTGAAACAAGGTTAAAAGATATTCCTGTAAAACCTAATACACCAAT
ACCCACAAATTGTAAATCAACTGTTCCATTTCAATGAGCCTACAGTAAGG
AATCTTCGAAGCTTTTCTGAACCTTTTCTGAAAGTCCTTCCTCGCAAACG
ATATCAATAGCGGTCATTGCCATACTCTTTGCTGAATTCAATGTGGGTAA
CTGACTTTCCGCAGATCCAGCGGCTTTTGTAAAGCCATGGTTATGGTTTG
TTTCTTCCGATTTTATTTTATATATAGGGTGTATAGATGGTTTCATTGCT
GATACATTTCCCATATCTGTCGAAGCTTGCAATATGTCTCTCATGCTATC
ATCTTCAAAAGGAACGCCAAGTGATTTTGCGTTTTCGATGTAAAGATCGA
TCATGACTTGATTTGTATTGACAGCAGCGAAGTAAGGACTTGATTCAAAC
ATCTCCATAGTACAGCCT Run BLAST on NCBI transcript from alignment at sc0003737:9486..10536- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042860 ID=TCONS_00042860|Name=TCONS_00042860|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at sc0003737:9486..10536- (Clytia hemisphaerica)
CAAGTAATTCCATCAAAGAGAAAGTCAAACATCTTGGATTCAGTCGTTAT
CGGATCGTCTCGATGGTTCACGTAGGTCAAAATTTACATCAAGGAACTTC
GATTGCCAGTAGAACTTTGATGGATAAAGAAAATGACGATTTTACAGAGT
TAACGATTGATTATGGACATTTCTTTGTGACTGCTGTTGTGTATGCTGTT
TACAAATTGTAAATGGAATGTGGGAAAAAATAAATAGAAAGAAGATTTAG
TCAAAGTCTGTTCCAGCCAAAAATGGCAATGGTCACATTTTAATACATTA
AAGGAAACCCTGGCTAAAGGAAACCTTGTACAATACAATTTAAAAGAAAA
GCCTCAGTTGGAACTATCTTTCCAACGCAGTATTACTTTAATCATTTATT
ATTTTATTCGAGACCATTTTTTTAGACAATACTTCAGAAATGTAATATAT
GAATGTGAAACAAGGTTAAAAGATATTCCTATAAAACCTAATACACCAAT
ACCCACAAATTGTAAATCAACTGTTCCATTTCAATGAGCCTACAGTAAGG
AATCTTCGAAGCTTTTCTGAACCTTTTCTAAANAAATGTGAAACAAGGTT
AAAAGATATTCCTGTAAAACCTAATACACCAATACCCACAAATTGTAAAT
CAACTGTTCCATTTCAATGAGCCTACAGTAAGGAATCTTCGAAGCTTTTC
TGAACCTTTTCTGAAAGTCCTTCCTCGCAAACGATATCAATAGCGGTCAT
TGCCATACTCTTTGCTGAATTCAATGTGGGTAACTGACTTTCCGCAGATC
CAGCGGCTTTTGTAAAGCCATGGTTATGGTTTGTTTCTTCCGATTTTATT
TTATATATAGGGTGTATAGATGGTTTCATTGCTGATACATTTCCCATATC
TGTCGAAGCTTGCAATATGTCTCTCATGCTATCATCTTCAAAAGGAACGC
CAAGTGATTTTGCGTTTTCGATGTAAAGATCGATCATGACTTGATTTGTA
TTGACAGCAGCGAAGTAAGGACTTGATTCAAACATCTCCATAGTACAGCC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042860-exon-sc0003737-1575043694:10073..10536 | TCONS_00042860-exon-sc0003737-1575043694:10073..10536 | Clytia hemisphaerica | exon |
| TCONS_00042860-exon-sc0003737-1575043694:9486..9939 | TCONS_00042860-exon-sc0003737-1575043694:9486..9939 | Clytia hemisphaerica | exon |
| TCONS_00042860-exon-sc0003737-1510915933:10073..10536 | TCONS_00042860-exon-sc0003737-1510915933:10073..10536 | Clytia hemisphaerica | exon |
| TCONS_00042860-exon-sc0003737-1510915933:9486..9939 | TCONS_00042860-exon-sc0003737-1510915933:9486..9939 | Clytia hemisphaerica | exon |
| TCONS_00042860-exon-sc0003737-1491911889:10073..10536 | TCONS_00042860-exon-sc0003737-1491911889:10073..10536 | Clytia hemisphaerica | exon |
| TCONS_00042860-exon-sc0003737-1491911889:9486..9939 | TCONS_00042860-exon-sc0003737-1491911889:9486..9939 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003737 | supercontig | sc0003737:9486..10536 - |
Blast
BLAST of TCONS_00042860 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 4.109e-22 Identity = 49/125 (39.20%), Postives = 77/125 (61.60%), Query Frame = -2
Query: 546 GCTMEMFESSPYFAAVNTNQVMIDLYIENAKSLGVPF-EDDSMRDILQASTDMGNVSAMKPSIHPIYKIKSEETNHNHGFTKAAGSAESQLPTLNSAKSMAMTAIDIVCEEGLSEKVQKSFEDSL 917
GCT+E+ + + V N+ + Y+EN + LG+ F +D+M + STD GNVS + P IHP + I S NH +T+AAGS E+Q TL +AK++AMTA+D++ + L E +++ F+ L
Sbjct: 302 GCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFKLKL 426
The following BLAST results are available for this feature:
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