TCONS_00042859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042859
Unique NameTCONS_00042859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042859 ID=TCONS_00042859|Name=TCONS_00042859|organism=Clytia hemisphaerica|type=transcript|length=1737bp
tttcagggtagaaaatgaaagaaaaattgaaacagatcATTTGCGAAGCC
ATAGACTCCAAGAAAGATGAACTAAACAATATCAGTcaagaaatttggaa
aaatcctgagttgaatttcaaagaatttAAAGCGCATGCTTTGCTGACGT
CATATCTCGAGAAAGAAGGGTTTGAAGTATCAAAGAGCACTCCTTTGGAA
ACTTCATTTATTGCTCGTTATGGTAAAAAAGAAGGAATCAAAGTTGGAGT
GATTTGTGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATA
ATTTGATCGCTGAAGCAGGAATCGGAGCAGCTTTAGGATTGAAATCAGTG
ATTGATTCAAAACCTGATTGCAATTTCCACTTGATCGTTTATGGCACGCC
AGCGGAAGAAGGGGgcggtggaaaatgtttgatgaTCGAAAAAGGCGTTT
TTGATGAAGCAGATATTTGCATGATGAGTCATCCTGCGCCATATGAAATT
CCGAGCCCTTCTTGGCTTGGTGTTGCCCAATACAGAATCGTTTTCAAAGG
CAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAATGAACGCATTAG
ATGCCGCTGTAGCATGTTATAATAACGTTAGCATGTTACGACAACAAATG
AAACCAACTAATCGTATTCATTGCACTATTGTGGATGGAGGAGAAAGACC
AAATATCATTCCTGAACGCGCcgaaatgttttattttgttcgCGCGCAAA
CTGATAAAGAAGTCGCGAGTATGGTCGAACGACTCAGAGCGTGCGCTGAA
GGAGCAGCCCAGTCTACAGGCTGTACTATGGAGATGTTTGAATCAAGTCC
TTACTTCGCTGCTGTCAATACAAATCAAGTCATGATCGATCTTTACATCG
AAAACGCAAAATCACTTGGCGTTCCTTTTGAAGATGATAGCATGAGAGAC
ATATTGCAAGCTTCGACAGATATGGGAAATGTATCAGCAATGAAACCATC
TATACACCCTATATATAAAATAAAATCGGAAGAAACAAACCATAACCATG
GCTTTACAAAAGCCGCTGGATCTGCGGAAAGTCAGTTACCCACATTGAAT
TCAGCAAAGAGTATGGCAATGACCGCTATTGATATCGTTTGCGAGGAAGG
ACTTTCAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCTTACTGTAGGCTC
ATTGAAATGGAACAGTTGATTTACAATTTGTGGGTATTGGTGTATTAGGT
TTTATAGGAATATCTTTTAACCTTGTTTCACATTCATATATTACATTTCT
GAAGTATTGTCTAAAAAAATGGTCTCgaataaaataataaatgatTAAAG
TAATACTGCGTTGGAAAGATAGTTCCAACTGAggcttttcttttaaattg
taTTGTACAAGGTTTCCTTTAGCCAGGGTTTCCTTTAATGTATTAAAATG
TGACCATTGCCATTTTTGGCTGGAACAGACTTTGACTAAATcttctttct
atttattttttcccacaTTCCATTTACAATTTGTAAACAGCATACACAAC
AGCAGTCACAAAGAAATGTCCATAATCAATCGTTAACTCTGTAAAATCGT
CATTTTCTTTATCCATCAAAGTTCTACTGGCAATCGAAGTTCCTTGATGT
AAATTTTGACCTACGTGAACCATCGAGACGATCCGATAACGACTGAATCC
AAGATGTTTGACTTTCTCTTTGATGGAATTACTTGCA
Run BLAST on NCBI

protein sequence of TCONS_00042859-protein

>TCONS_00042859-protein ID=TCONS_00042859-protein|Name=TCONS_00042859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
MKEKLKQIICEAIDSKKDELNNISQEIWKNPELNFKEFKAHALLTSYLEK
EGFEVSKSTPLETSFIARYGKKEGIKVGVICEYDALPGVGHACGHNLIAE
AGIGAALGLKSVIDSKPDCNFHLIVYGTPAEEGGGGKCLMIEKGVFDEAD
ICMMSHPAPYEIPSPSWLGVAQYRIVFKGKTAHAAAAPWEGMNALDAAVA
CYNNVSMLRQQMKPTNRIHCTIVDGGERPNIIPERAEMFYFVRAQTDKEV
ASMVERLRACAEGAAQSTGCTMEMFESSPYFAAVNTNQVMIDLYIENAKS
LGVPFEDDSMRDILQASTDMGNVSAMKPSIHPIYKIKSEETNHNHGFTKA
AGSAESQLPTLNSAKSMAMTAIDIVCEEGLSEKVQKSFEDSLL
Run BLAST on NCBI

transcript from alignment at sc0003737:7264..10538+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042859 ID=TCONS_00042859|Name=TCONS_00042859|organism=Clytia hemisphaerica|type=transcript|length=3275bp|location=Sequence derived from alignment at sc0003737:7264..10538+ (Clytia hemisphaerica)
tttcagggtagaaaatgaaagaaaaattgaaacagatcATTTGCGAAGCC
ATAGACTCCAAGAAAGATGAACTAAACAATATCAGTcaagaaatttggaa
aaatcctgagttgaatttcaaagaatttAAAGCGCATGCTTTGCTGACGT
CATATCTCGAGAAAGAAGGGTTTGAAGTATCAAAGAGCACTCCTTTGGAA
ACTTCATTTATTGCTCGTTATGGTAAAAAAGAAGGAATCAAAGTTGGAGT
GATTTGTGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATA
ATTTGATCGCTGAAGCAGGAATCGGAGCAGCTTTAGGTAGGGAATACAGG
TTCAACAATACCATATTCAAATAACTGAtcagaaaagtttgaaaacatCT
TTTCACCCACCATTCAAAGTTATGATCACCAGGGTAACTAGTAAATGTTT
GGGAAAAGAGGTGACGATACAGCCTTAAAGCCATGAAGTATGTCTTAAAA
GTATGTGAACACTTtaccttttcaacattttctAAGCACCCACTCATGCT
ATGTTAAAAAGGTATGTACAGTTGGAAAGGTATTTTTGAGGAGAATGCTA
TAATATAATAAAGAATtcggaaaaaagaaaattaaatgaaaatttttcta
ctGGTTTAACATTCACAAAAGAGCACTTTTTAGAATATTTAAACCTTTCT
GATTCCAAAACTCAATTCAGATTTTTGGTATGATACTTACTTTGGACCAA
AGTTGGGTATAATGGTCAAAACTCATCCgaaatagcaaaaaaaacctAGT
TTTTGTGCCATTTTATCAAACCagtagaaaatatattttctttttacttt
tatttttcttcttcactgtcaatttttcaagaaattttaatcaaTGGATT
GTGAATTGATAAGCTGATGAATATTCTTTATATCTTTTTCCCTACTCCAG
GATTGAAATCAGTGATTGATTCAAAACCTGATTGCAATTTCCACTTGATC
GTTTATGGCACGCCAGCGGAAGAAGGGGgcggtggaaaatgtttgatgaT
CGAAAAAGGCGTTTTTGATGAAGCAGATATTTGCATGATGAGTCATCCTG
CGCCATATGAAATTCCGAGCCCTTCTTGGCTTGGTGTTGCCCAATACAGA
ATCGTTTTCAAAGGTAGCATTTTTTTATGGTAATAAAtatctatttttta
tataaaactaAACTTAGGCCTACAGCTTAAGTGCCAATCGTCCATAAATG
TATTTTTATCCGATTAGTACTAAAATGACGAATAATTTACAATACTAACT
AATGACTGGGCAATAACATTTGAATTTTTCTGCACGTGTAAATACGTGAT
AATACATTAGAATATCTCATTCTTACGAAGAAAATCTTCCAaatctatat
ttttatattttacttaTAATTAATGTATTCTTTTCTCTCCTCAGGCAAAA
CAGCACACGCAGCAGCGGCGCCATGGGAAGGAATGAACGCATTAGATGCC
GCTGTAGCATGTTATAATAACGTTAGCATGTTACGACAACAAATGAAACC
AACTAATCGTATTCATTGCACTATTGTGGATGGAGGAGAAAGACCAAATA
TCATTCCTGAACGCGCcgaaatgttttattttgttcgCGCGCAAACTGAT
AAAGAAGTCGCGAGTATGGTCGAACGACTCAGAGCGTGCGCTGAAGGAGC
AGCCCAGTCTACAGGTTAGAAATTTCTCTCTTACTTGATGAACCAGCTTT
TGTAGATTTCACTGCTATAATCTGTATGATCAAGCAACTTCCCAGGGGCT
ANCAGGTTAGAAATTTCTCTCTTACTTGATGAACCAGCTTTTGTAGATTT
CACTGCTATAATCTGTATGATCAAGCAACTTCCCAGGGGCTACTTTGACA
CAATTGatgtcgggtatgtgcgtgccatACGGGTCCTATTTTTaaaccct
cgaaagtctctcaaaaggTAGAAGAATCGagtctgaaagggtcccaaact
tacgaaatctaaaaattggaaaaaatagtctctcaaagggttgcAAAATG
TCGAAATTCAGTAGTCTCTCAAAtggtcgattttcgaactttgacTCGGA
cttacccgtcacctcgcaaacctagtagcTCCCCCCGGGGCAGCTTAAAA
TGTTGTGTGTTTATGGTCCGTCTTTAGAAGTAGTTATCCTGTAGACAGAT
TGAAGTGTTTATGAATTTTCATAGGCTGTACTATGGAGATGTTTGAATCA
AGTCCTTACTTCGCTGCTGTCAATACAAATCAAGTCATGATCGATCTTTA
CATCGAAAACGCAAAATCACTTGGCGTTCCTTTTGAAGATGATAGCATGA
GAGACATATTGCAAGCTTCGACAGATATGGGAAATGTATCAGCAATGAAA
CCATCTATACACCCTATATATAAAATAAAATCGGAAGAAACAAACCATAA
CCATGGCTTTACAAAAGCCGCTGGATCTGCGGAAAGTCAGTTACCCACAT
TGAATTCAGCAAAGAGTATGGCAATGACCGCTATTGATATCGTTTGCGAG
GAAGGACTTTCAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCTTACTGTA
GGCTCATTGAAATGGAACAGTTGATTTACAATTTGTGGGTATTGGTGTAT
TAGGTTTTACAGGAATATCTTTTAACCTTGTTTCACATTTNTTTAGAAAA
GGTTCAGAAAAGCTTCGAAGATTCCTTACTGTAGGCTCATTGAAATGGAA
CAGTTGATTTACAATTTGTGGGTATTGGTGTATTAGGTTTTATAGGAATA
TCTTTTAACCTTGTTTCACATTCATATATTACATTTCTGAAGTATTGTCT
AAAAAAATGGTCTCgaataaaataataaatgatTAAAGTAATACTGCGTT
GGAAAGATAGTTCCAACTGAggcttttcttttaaattgtaTTGTACAAGG
TTTCCTTTAGCCAGGGTTTCCTTTAATGTATTAAAATGTGACCATTGCCA
TTTTTGGCTGGAACAGACTTTGACTAAATcttctttctatttattttttc
ccacaTTCCATTTACAATTTGTAAACAGCATACACAACAGCAGTCACAAA
GAAATGTCCATAATCAATCGTTAACTCTGTAAAATCGTCATTTTCTTTAT
CCATCAAAGTTCTACTGGCAATCGAAGTTCCTTGATGTAAATTTTGACCT
ACGTGAACCATCGAGACGATCCGATAACGACTGAATCCAAGATGTTTGAC
TTTCTCTTTGATGGAATTACTTGCA

Coding sequence (CDS) from alignment at sc0003737:7264..10538+

>TCONS_00042859 ID=TCONS_00042859|Name=TCONS_00042859|organism=Clytia hemisphaerica|type=CDS|length=5910bp|location=Sequence derived from alignment at sc0003737:7264..10538+ (Clytia hemisphaerica)
atgaaagaaaaattgaaacagatcATTTGCGAAGCCATAGACTCCAAGAA
AGATGAACTAAACAATATCAGTcaagaaatttggaaaaatcctgagttga
atttcaaagaatttAAAGCGCATGCTTTGCTGACGTCATATCTCGAGAAA
GAAGGGTTTGAAGTATCAAAGAGCACTCCTTTGGAAACTTCATTTATTGC
TCGTTATGGTAAAAAAGAAGGAATCAAAGTTGGAGTGATTTGTGAATATG
ATGCATTACCTGGAGTTGGACATGCTTGCGGTCATAATTTGATCGCTGAA
GCAGGAATCGGAGCAGCTTTAGGATTGAAATCAGTGATTGATTCAAAACC
TGATTGCAATTTCCACTTGATCGTTTATGGCACGCCAGCGGAAGAAGGGG
gcggtggaaaatgtttgatgaTCGAAAAAGGCGTTTTTGATGAAGCAGAT
ATTTGCATGATGAGTCATCCTGCGCCATATGAAATTCCGAGCCCTTCTTG
GCTTGGTGTTGCCCAATACAGAATCGTTTTCAAAGGCAAAACAGCACACG
CAGCAGCGGCGCCATGGGAAGGAATGAACGCATTAGATGCCGCTGTAGCA
TGTTATAATAACGTTAGCATGTTACGACAACAAATGAAACCAACTAATCG
TATTCATTGCACTATTGTGGATGGAGGAGAAAGACCAAATATCATTCCTG
AACGCGCcgaaatgttttattttgttcgCGCGCAAACTGATAAAGAAGTC
GCGAGTATGGTCGAACGACTCAGAGCGTGCGCTGAAGGAGCAGCCCAGTC
TACAGGCTGTACTATGGAGATGTTTGAATCAAGTCCTTACTTCGCTGCTG
TCAATACAAATCAAGTCATGATCGATCTTTACATCGAAAACGCAAAATCA
CTTGGCGTTCCTTTTGAAGATGATAGCATGAGAGACATATTGCAAGCTTC
GACAGATATGGGAAATGTATCAGCAATGAAACCATCTATACACCCTATAT
ATAAAATAAAATCGGAAGAAACAAACCATAACCATGGCTTTACAAAAGCC
GCTGGATCTGCGGAAAGTCAGTTACCCACATTGAATTCAGCAAAGAGTAT
GGCAATGACCGCTATTGATATCGTTTGCGAGGAAGGACTTTCAGAAAAGG
TTCAGAAAAGCTTCGAAGATTCCTTACTGTAGatgaaagaaaaattgaaa
cagatcATTTGCGAAGCCATAGACTCCAAGAAAGATGAACTAAACAATAT
CAGTcaagaaatttggaaaaatcctgagttgaatttcaaagaatttAAAG
CGCATGCTTTGCTGACGTCATATCTCGAGAAAGAAGGGTTTGAAGTATCA
AAGAGCACTCCTTTGGAAACTTCATTTATTGCTCGTTATGGTAAAAAAGA
AGGAATCAAAGTTGGAGTGATTTGTGAATATGATGCATTACCTGGAGTTG
GACATGCTTGCGGTCATAATTTGATCGCTGAAGCAGGAATCGGAGCAGCT
TTAGGATTGAAATCAGTGATTGATTCAAAACCTGATTGCAATTTCCACTT
GATCGTTTATGGCACGCCAGCGGAAGAAGGGGgcggtggaaaatgtttga
tgaTCGAAAAAGGCGTTTTTGATGAAGCAGATATTTGCATGATGAGTCAT
CCTGCGCCATATGAAATTCCGAGCCCTTCTTGGCTTGGTGTTGCCCAATA
CAGAATCGTTTTCAAAGGCAAAACAGCACACGCAGCAGCGGCGCCATGGG
AAGGAATGAACGCATTAGATGCCGCTGTAGCATGTTATAATAACGTTAGC
ATGTTACGACAACAAATGAAACCAACTAATCGTATTCATTGCACTATTGT
GGATGGAGGAGAAAGACCAAATATCATTCCTGAACGCGCcgaaatgtttt
attttgttcgCGCGCAAACTGATAAAGAAGTCGCGAGTATGGTCGAACGA
CTCAGAGCGTGCGCTGAAGGAGCAGCCCAGTCTACAGGCTGTACTATGGA
GATGTTTGAATCAAGTCCTTACTTCGCTGCTGTCAATACAAATCAAGTCA
TGATCGATCTTTACATCGAAAACGCAAAATCACTTGGCGTTCCTTTTGAA
GATGATAGCATGAGAGACATATTGCAAGCTTCGACAGATATGGGAAATGT
ATCAGCAATGAAACCATCTATACACCCTATATATAAAATAAAATCGGAAG
AAACAAACCATAACCATGGCTTTACAAAAGCCGCTGGATCTGCGGAAAGT
CAGTTACCCACATTGAATTCAGCAAAGAGTATGGCAATGACCGCTATTGA
TATCGTTTGCGAGGAAGGACTTTCAGAAAAGGTTCAGAAAAGCTTCGAAG
ATTCCTTACTGTAGatgaaagaaaaattgaaacagatcATTTGCGAAGCC
ATAGACTCCAAGAAAGATGAACTAAACAATATCAGTcaagaaatttggaa
aaatcctgagttgaatttcaaagaatttAAAGCGCATGCTTTGCTGACGT
CATATCTCGAGAAAGAAGGGTTTGAAGTATCAAAGAGCACTCCTTTGGAA
ACTTCATTTATTGCTCGTTATGGTAAAAAAGAAGGAATCAAAGTTGGAGT
GATTTGTGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATA
ATTTGATCGCTGAAGCAGGAATCGGAGCAGCTTTAGGATTGAAATCAGTG
ATTGATTCAAAACCTGATTGCAATTTCCACTTGATCGTTTATGGCACGCC
AGCGGAAGAAGGGGgcggtggaaaatgtttgatgaTCGAAAAAGGCGTTT
TTGATGAAGCAGATATTTGCATGATGAGTCATCCTGCGCCATATGAAATT
CCGAGCCCTTCTTGGCTTGGTGTTGCCCAATACAGAATCGTTTTCAAAGG
CAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAATGAACGCATTAG
ATGCCGCTGTAGCATGTTATAATAACGTTAGCATGTTACGACAACAAATG
AAACCAACTAATCGTATTCATTGCACTATTGTGGATGGAGGAGAAAGACC
AAATATCATTCCTGAACGCGCcgaaatgttttattttgttcgCGCGCAAA
CTGATAAAGAAGTCGCGAGTATGGTCGAACGACTCAGAGCGTGCGCTGAA
GGAGCAGCCCAGTCTACAGGCTGTACTATGGAGATGTTTGAATCAAGTCC
TTACTTCGCTGCTGTCAATACAAATCAAGTCATGATCGATCTTTACATCG
AAAACGCAAAATCACTTGGCGTTCCTTTTGAAGATGATAGCATGAGAGAC
ATATTGCAAGCTTCGACAGATATGGGAAATGTATCAGCAATGAAACCATC
TATACACCCTATATATAAAATAAAATCGGAAGAAACAAACCATAACCATG
GCTTTACAAAAGCCGCTGGATCTGCGGAAAGTCAGTTACCCACATTGAAT
TCAGCAAAGAGTATGGCAATGACCGCTATTGATATCGTTTGCGAGGAAGG
ACTTTCAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCTTACTGTAGatga
aagaaaaattgaaacagatcATTTGCGAAGCCATAGACTCCAAGAAAGAT
GAACTAAACAATATCAGTcaagaaatttggaaaaatcctgagttgaattt
caaagaatttAAAGCGCATGCTTTGCTGACGTCATATCTCGAGAAAGAAG
GGTTTGAAGTATCAAAGAGCACTCCTTTGGAAACTTCATTTATTGCTCGT
TATGGTAAAAAAGAAGGAATCAAAGTTGGAGTGATTTGTGAATATGATGC
ATTACCTGGAGTTGGACATGCTTGCGGTCATAATTTGATCGCTGAAGCAG
GAATCGGAGCAGCTTTAGGATTGAAATCAGTGATTGATTCAAAACCTGAT
TGCAATTTCCACTTGATCGTTTATGGCACGCCAGCGGAAGAAGGGGgcgg
tggaaaatgtttgatgaTCGAAAAAGGCGTTTTTGATGAAGCAGATATTT
GCATGATGAGTCATCCTGCGCCATATGAAATTCCGAGCCCTTCTTGGCTT
GGTGTTGCCCAATACAGAATCGTTTTCAAAGGCAAAACAGCACACGCAGC
AGCGGCGCCATGGGAAGGAATGAACGCATTAGATGCCGCTGTAGCATGTT
ATAATAACGTTAGCATGTTACGACAACAAATGAAACCAACTAATCGTATT
CATTGCACTATTGTGGATGGAGGAGAAAGACCAAATATCATTCCTGAACG
CGCcgaaatgttttattttgttcgCGCGCAAACTGATAAAGAAGTCGCGA
GTATGGTCGAACGACTCAGAGCGTGCGCTGAAGGAGCAGCCCAGTCTACA
GGCTGTACTATGGAGATGTTTGAATCAAGTCCTTACTTCGCTGCTGTCAA
TACAAATCAAGTCATGATCGATCTTTACATCGAAAACGCAAAATCACTTG
GCGTTCCTTTTGAAGATGATAGCATGAGAGACATATTGCAAGCTTCGACA
GATATGGGAAATGTATCAGCAATGAAACCATCTATACACCCTATATATAA
AATAAAATCGGAAGAAACAAACCATAACCATGGCTTTACAAAAGCCGCTG
GATCTGCGGAAAGTCAGTTACCCACATTGAATTCAGCAAAGAGTATGGCA
ATGACCGCTATTGATATCGTTTGCGAGGAAGGACTTTCAGAAAAGGTTCA
GAAAAGCTTCGAAGATTCCTTACTGTAGatgaaagaaaaattgaaacaga
tcATTTGCGAAGCCATAGACTCCAAGAAAGATGAACTAAACAATATCAGT
caagaaatttggaaaaatcctgagttgaatttcaaagaatttAAAGCGCA
TGCTTTGCTGACGTCATATCTCGAGAAAGAAGGGTTTGAAGTATCAAAGA
GCACTCCTTTGGAAACTTCATTTATTGCTCGTTATGGTAAAAAAGAAGGA
ATCAAAGTTGGAGTGATTTGTGAATATGATGCATTACCTGGAGTTGGACA
TGCTTGCGGTCATAATTTGATCGCTGAAGCAGGAATCGGAGCAGCTTTAG
GATTGAAATCAGTGATTGATTCAAAACCTGATTGCAATTTCCACTTGATC
GTTTATGGCACGCCAGCGGAAGAAGGGGgcggtggaaaatgtttgatgaT
CGAAAAAGGCGTTTTTGATGAAGCAGATATTTGCATGATGAGTCATCCTG
CGCCATATGAAATTCCGAGCCCTTCTTGGCTTGGTGTTGCCCAATACAGA
ATCGTTTTCAAAGGCAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGG
AATGAACGCATTAGATGCCGCTGTAGCATGTTATAATAACGTTAGCATGT
TACGACAACAAATGAAACCAACTAATCGTATTCATTGCACTATTGTGGAT
GGAGGAGAAAGACCAAATATCATTCCTGAACGCGCcgaaatgttttattt
tgttcgCGCGCAAACTGATAAAGAAGTCGCGAGTATGGTCGAACGACTCA
GAGCGTGCGCTGAAGGAGCAGCCCAGTCTACAGGCTGTACTATGGAGATG
TTTGAATCAAGTCCTTACTTCGCTGCTGTCAATACAAATCAAGTCATGAT
CGATCTTTACATCGAAAACGCAAAATCACTTGGCGTTCCTTTTGAAGATG
ATAGCATGAGAGACATATTGCAAGCTTCGACAGATATGGGAAATGTATCA
GCAATGAAACCATCTATACACCCTATATATAAAATAAAATCGGAAGAAAC
AAACCATAACCATGGCTTTACAAAAGCCGCTGGATCTGCGGAAAGTCAGT
TACCCACATTGAATTCAGCAAAGAGTATGGCAATGACCGCTATTGATATC
GTTTGCGAGGAAGGACTTTCAGAAAAGGTTCAGAAAAGCTTCGAAGATTC
CTTACTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026642XLOC_026642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042859-exon-sc0003737-1491911889:7264..7599TCONS_00042859-exon-sc0003737-1491911889:7264..7599Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1510915933:7264..7599TCONS_00042859-exon-sc0003737-1510915933:7264..7599Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1575043694:7264..7599TCONS_00042859-exon-sc0003737-1575043694:7264..7599Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1491911889:8214..8426TCONS_00042859-exon-sc0003737-1491911889:8214..8426Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1510915933:8214..8426TCONS_00042859-exon-sc0003737-1510915933:8214..8426Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1575043694:8214..8426TCONS_00042859-exon-sc0003737-1575043694:8214..8426Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1491911889:8708..8977TCONS_00042859-exon-sc0003737-1491911889:8708..8977Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1510915933:8708..8977TCONS_00042859-exon-sc0003737-1510915933:8708..8977Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1575043694:8708..8977TCONS_00042859-exon-sc0003737-1575043694:8708..8977Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1491911889:9488..9831TCONS_00042859-exon-sc0003737-1491911889:9488..9831Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1510915933:9488..9831TCONS_00042859-exon-sc0003737-1510915933:9488..9831Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1575043694:9488..9831TCONS_00042859-exon-sc0003737-1575043694:9488..9831Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1491911889:9965..10538TCONS_00042859-exon-sc0003737-1491911889:9965..10538Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1510915933:9965..10538TCONS_00042859-exon-sc0003737-1510915933:9965..10538Clytia hemisphaericaexon
TCONS_00042859-exon-sc0003737-1575043694:9965..10538TCONS_00042859-exon-sc0003737-1575043694:9965..10538Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042859-proteinTCONS_00042859-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003737supercontigsc0003737:7264..10538 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.4795	45.7729	44.8748	43.6342	3.64941	3.22186	12.9816	15.081	27.0677	19.8538	19.3089	23.151	22.4077	21.989	30.2508	36.6741	20.5428	22.3722	14.4504	13.8537	27.0784	26.595	29.7674	27.6556	21.3752	21.9384	16.1169	13.3952	18.3624	15.0292
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011650Peptidase_M20_dimer
IPR002933Peptidase_M20
IPR017144Pept_M20A_amidohydro_pred
IPR017439Amidohydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016787 hydrolase activity
Blast
[Close]
BLAST of TCONS_00042859 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 1.749e-89
Identity = 165/406 (40.64%), Postives = 241/406 (59.36%), Query Frame = 3 
Query:   21 EKLKQIICEAIDSKKDELNNISQEIWKNPELNFKEFKAHALLTSYLEKE----GFEVSKSTPLETSFIARYGKKEG---------IKVGVICEYDALPGVGHACGHNXXXXXXXXXXXXXKSVIDS--KPDCNFHLIVYGTPAEEGGGGKCLMIEKGVFDEADICMMSHPAPYEIPSPSWLGVAQYRIVFKGKTAHAAAAPWEGMNALDAAVACYNNVSMLRQQMKPTNRIHCTIVDGGERPNIIPERAEMFYFVRAQTDKEVASMVERLRACAEGAAQSTGCTMEMFESSPYFAAVNTNQVMIDLYIENAKSLGVPF-EDDSMRDILQASTDMGNVSAMKPSIHPIYKIKSEETNHNHGFTKAAGSAESQLPTLNSAKSMAMTAIDIVCEEGLSEKVQKSFEDSL 1190
            E LK    E ID   + L  +S+ IW  PEL ++E  AH +LT + E+E     + V     L T+F A +   E          + +G +CEYDALPG+GHACGHNLIAE G  AALG++  ++   +P     ++V GTPAEE GGGK  +IE G F   D+  M+HP+         +      + + GK +H+A+ PWEG+NALDAAV  YNN+S+ RQQMKPT R+H  I +GG +PNIIP  +E+ Y+ RA + KE+  + ++   C   AA ++GCT+E+   +  +  V  N+ +   Y+EN + LG+ F  +D+M +    STD GNVS + P IHP + I S   NH   +T+AAGS E+Q  TL +AK++AMTA+D++ +  L E +++ F+  L
Sbjct:   21 ELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDMAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFKLKL 426
The following BLAST results are available for this feature:
BLAST of TCONS_00042859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P20D21.749e-8940.64Peptidase M20 domain-containing protein 2 OS=Homo ... [more]
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