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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042854 ID=TCONS_00042854|Name=TCONS_00042854|organism=Clytia hemisphaerica|type=transcript|length=1309bp
AACTcgcaaaacaagatggcggaacAAGAGATTGCCAACAAAGAGAAACA
GGCAGCTGGCTCAAGTAAGAGAAGTGCTGACGTCCTGGGAGAAGATGAAC
TTGAAGGGCCAAGAGCTAAAGTGTCTTGTCTAGAACTTTTTGAAGAGGAC
AATGCAATAAACTTAAGATCAGATCTAGCGGATCAAATAAACAACTACAT
TCGCAGACATGTCTCGGACAAAATTCTAAAAGAGAAGATTTTGGAAGACT
ATCCGATTCCATCTAACATAGACAAACCTCAGAAATTGGATATGTTTGTC
GAACAAAGTTGCATACTATAGACGTTTAAACATGGTTGAAAATATGACAG
GCGACTCTAAGAGAGCCAAGGAGCTTCtaagtgaaaatgaagaagttttc
aatgaaaaatcttGCAACCTTTTTGGTGAAAAGTTTGAGGATCTCATTGT
CAAATTAGccaaatccaaaaagaaatcaaaagatgcATTGTCAAATCTTG
CATCACCCAAGCCGGTATCCAAGAAGCCCTTTCACAGGAGCTCTCTATCA
AATGCAGATCAAGGAGGAGATAGGGGGCGTGGAAACAGAGGTGCCTTCAG
TGGTTGGTTGGCCAGGAGTCAGTCATCCTTCAACAAAAGAGGTAAGCCAT
CCTCCTTCAAATCTTCTGGAAATTCTACCAATGGGGGCTTTTTCCAAAGG
AGATCCCTCAAACACCGTTAGCAGGAAGGACAAAGTTCTTCCTGGAAAAC
TGGAAGAAACTAACAAACGATCAGATCTTATTAGAGATGGTGAGCGGGTA
CAGAATCCNNNNNNNNNNNNNNNNNAAATTTATTCCATACGAACACTTCA
AGATGGAGGGATTATTTTTAGTGAAGGAAATTCTGAAGCAGGGGGACTGG
ATGTTAAAAATCGATCCCAACGATGCATATTTCGCCATACCTTTAGATCA
GCATTCTCAGAGGTTTGTGAGATTCGAATGGGACAAGACCCTATACCAAT
TCCAGTGTCTCTGTTACGGTTTATCTCCAGCTCCAAgagtgttttcaaaa
attctgaagGTTCCAATTTCACTTCTGAGGAGATTAGGGAttcgtttaat
catatttctgGACGATATCCTGCTAATAGCCTCGACTCCAGAGGAGTTGA
GACAGATGAGGGACACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTCTA
ATAAATGTCAAGAAGTCAGTTTTCGAACCAACCCAAAAGATAGAATTCTT
GGGGATGATAATAGACTCAATCAAAATGACTCTAAGCCTTCCAGAAGAGA
AGGTGGTTG Run BLAST on NCBI protein sequence of TCONS_00042854-protein >TCONS_00042854-protein ID=TCONS_00042854-protein|Name=TCONS_00042854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MHCQILHHPSRYPRSPFTGALYQMQIKEEIGGVETEVPSVVGWPGVSHPS
TKEVSHPPSNLLEILPMGAFSKGDPSNTVSRKDKVLPGKLEETNKRSDLI
RDGERVQNXXXXXXXIYSIRTLQDGGIIFSEGNSEAGGLDVKNRSQRCIF
RHTFRSAFSEVCEIRMGQDPIPIPVSLLRFISSSKSVFKNSEGSNFTSEE
IRDSFNHISGRYPANSLDSRGVETDEGHNYFPFAKSWVSNKCQEVSFRTN
PKDRILGDDNRLNQNDSKPSRREGG Run BLAST on NCBI transcript from alignment at sc0003735:7652..9242+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042854 ID=TCONS_00042854|Name=TCONS_00042854|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at sc0003735:7652..9242+ (Clytia hemisphaerica)
AACTcgcaaaacaagatggcggaacAAGAGTAAGTGTaattaaaattctt
tgaattccCCAAATATCCAAGTAATCTGACACATATTGAAAGTGATAAAA
GGCTCAGCCATCACTGAGAGGATAATGGGTCATAACTAAGTTACTCATTT
CACTTCGAGATACAGGAACTAGCTGGTATAGCCATAGATTCTTTTTTTGC
TCGTTGTTTTGTCAGATCAGAATCGAAAGAAACAATAGGTTAAGCCCCCA
GGGCTAACCGTTCCACAATACTTATTACCTGTGGTAATATGTTTTCTCTT
TTATGTCACAGGATTGCCAACAAAGAGAAACAGGCAGCTGGCTCAAGTAA
GAGAAGTGCTGACGTCCTGGGAGAAGATGAACTTGAAGGGCCAAGAGCTA
AAGTGTCTTGTCTAGAACTTTTTGAAGAGGACAATGCAATAAACTTAAGA
TCAGATCTAGCGGATCAAATAAACAACTACATTCGCAGACATGTCTCGGA
CAAAATTCTAAAAGAGAAGATTTTGGAAGACTATCCGATTCCATCTAACA
TAGACAAACCTCAGAAATTGGATATGTTTGTCGAACAAAGTTGCATACTA
TAGACGTTTAAACATGGTTGAAAATATGACAGGCGACTCTAAGAGAGCCA
AGGAGCTTCtaagtgaaaatgaagaagttttcaatgaaaaatcttGCAAC
CTTTTTGGTGAAAAGTTTGAGGATCTCATTGTCAAATTAGccaaatccaa
aaagaaatcaaaagatgcATTGTCAAATCTTGCATCACCCAAGCCGGTAT
CCAAGAAGCCCTTTCACAGGAGCTCTCTATCAAATGCAGATCAAGGAGGA
GATAGGGGGCGTGGAAACAGAGGTGCCTTCAGTGGTTGGTTGGCCAGGAG
TCAGTCATCCTTCAACAAAAGAGGTAAGCCATCCTCCTTCAAATCTTCTG
GAAATTCTACCAATGGGGGCTTTTTCCAAAGGAGATCCCTCAAACACCGT
TAGCAGGAAGGACAAAGTTCTTCCTGGAAAACTGGAAGAAACTAACAAAC
GATCAGATCTTATTAGAGATGGTGAGCGGGTACAGAATCCNNNNNNNNNN
NNNNNNNAAATTTATTCCATACGAACACTTCAAGATGGAGGGATTATTTT
TAGTGAAGGAAATTCTGAAGCAGGGGGACTGGATGTTAAAAATCGATCCC
AACGATGCATATTTCGCCATACCTTTAGATCAGCATTCTCAGAGGTTTGT
GAGATTCGAATGGGACAAGACCCTATACCAATTCCAGTGTCTCTGTTACG
GTTTATCTCCAGCTCCAAgagtgttttcaaaaattctgaagGTTCCAATT
TCACTTCTGAGGAGATTAGGGAttcgtttaatcatatttctgGACGATAT
CCTGCTAATAGCCTCGACTCCAGAGGAGTTGAGACAGATGAGGGACACAA
CTATTTTCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAGAAGTCA
GTTTTCGAACCAACCCAAAAGATAGAATTCTTGGGGATGATAATAGACTC
AATCAAAATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTG Coding sequence (CDS) from alignment at sc0003735:7652..9242+ >TCONS_00042854 ID=TCONS_00042854|Name=TCONS_00042854|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0003735:7652..9242+ (Clytia hemisphaerica)
atgcATTGTCAAATCTTGCATCACCCAAGCCGGTATCCAAGAAGCCCTTT
CACAGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGATAGGGGGCGTGG
AAACAGAGGTGCCTTCAGTGGTTGGTTGGCCAGGAGTCAGTCATCCTTCA
ACAAAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGAAATTCTACCAAT
GGGGGCTTTTTCCAAAGGAGATCCCTCAAACACCGTTAGCAGGAAGGACA
AAGTTCTTCCTGGAAAACTGGAAGAAACTAACAAACGATCAGATCTTATT
AGAGATGGTGAGCGGGTACAGAATCCNNNNNNNNNNNNNNNNNAAATTTA
TTCCATACGAACACTTCAAGATGGAGGGATTATTTTTAGTGAAGGAAATT
CTGAAGCAGGGGGACTGGATGTTAAAAATCGATCCCAACGATGCATATTT
CGCCATACCTTTAGATCAGCATTCTCAGAGGTTTGTGAGATTCGAATGGG
ACAAGACCCTATACCAATTCCAGTGTCTCTGTTACGGTTTATCTCCAGCT
CCAAgagtgttttcaaaaattctgaagGTTCCAATTTCACTTCTGAGGAG
ATTAGGGAttcgtttaatcatatttctgGACGATATCCTGCTAATAGCCT
CGACTCCAGAGGAGTTGAGACAGATGAGGGACACAACTATTTTCCTTTTG
CAAAGTCTTGGGTTTCTAATAAATGTCAAGAAGTCAGTTTTCGAACCAAC
CCAAAAGATAGAATTCTTGGGGATGATAATAGACTCAATCAAAATGACTC
TAAGCCTTCCAGAAGAGAAGGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042854-exon-sc0003735-1491911889:7652..7680 | TCONS_00042854-exon-sc0003735-1491911889:7652..7680 | Clytia hemisphaerica | exon |
| TCONS_00042854-exon-sc0003735-1510915933:7652..7680 | TCONS_00042854-exon-sc0003735-1510915933:7652..7680 | Clytia hemisphaerica | exon |
| TCONS_00042854-exon-sc0003735-1575043694:7652..7680 | TCONS_00042854-exon-sc0003735-1575043694:7652..7680 | Clytia hemisphaerica | exon |
| TCONS_00042854-exon-sc0003735-1491911889:7963..9242 | TCONS_00042854-exon-sc0003735-1491911889:7963..9242 | Clytia hemisphaerica | exon |
| TCONS_00042854-exon-sc0003735-1510915933:7963..9242 | TCONS_00042854-exon-sc0003735-1510915933:7963..9242 | Clytia hemisphaerica | exon |
| TCONS_00042854-exon-sc0003735-1575043694:7963..9242 | TCONS_00042854-exon-sc0003735-1575043694:7963..9242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003735 | supercontig | sc0003735:7652..9242 + |
Blast
The following BLAST results are available for this feature:
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