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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042853 ID=TCONS_00042853|Name=TCONS_00042853|organism=Clytia hemisphaerica|type=transcript|length=1674bp
CTCCGCCCAATCTAATATTGGTTACCGCCCTCACTCGGATAGTAAATCTA
GGACATCGTCCTAAACTACCCCTCTTAGCTTTCAACTcgcaaaacaagat
ggcggaacAAGAGTAAGTGTaattaaaattctttgaattccCCAAATATC
CAAGTAATCTGACACATATTGAAAGTGATAAAAGGCTCAGCCATCACTGA
GAGGATAATGGGTCATAACTAAGTTACTCATTTCACTTCGAGATACAGGA
ACTAGCTGGTATAGCCATAGATTCTTTTTTTGCTCGTTGTTTTGTCAGAT
CAGAATCGAAAGAAACAATAGGTTAAGCCCCCAGGGCTAACCGTTCCACA
ATACTTATTACCTGTGGTAATATGTTTTCTCTTTTATGTCACAGGATTGC
CAACAAAGAGAAACAGGCAGCTGGCTCAAGTAAGAGAAGTGCTGACGTCC
TGGGAGAAGATGAACTTGAAGGGCCAAGAGCTAAAGTGTCTTGTCTAGAA
CTTTTTGAAGAGGACAATGCAATAAACTTAAGATCAGATCTAGCGGATCA
AATAAACAACTACATTCGCAGACATGTCTCGGACAAAATTCTAAAAGAGA
AGATTTTGGAAGACTATCCGATTCCATCTAACATAGACAAACCTCAGAAA
TTGGATATGTTTGTCGAACAAAGTTGCATACTATAGACGTTTAAACATGG
TTGAAAATATGACAGGCGACTCTAAGAGAGCCAAGGAGCTTCtaagtgaa
aatgaagaagttttcaatgaaaaatcttGCAACCTTTTTGGTGAAAAGTT
TGAGGATCTCATTGTCAAATTAGccaaatccaaaaagaaatcaaaagatg
cATTGTCAAATCTTGCATCACCCAAGCCGGTATCCAAGAAGCCCTTTCAC
AGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGATAGGGGGCGTGGAAA
CAGAGGTGCCTTCAGTGGTTGGTTGGCCAGGAGTCAGTCATCCTTCAACA
AAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGAAATTCTACCAATGGG
GGCTTTTTCCAAAGGAGATCCCTCAAACACCGTTAGCAGGAAGGACAAAG
TTCTTCCTGGAAAACTGGAAGAAACTAACAAACGATCAGATCTTATTAGA
GATGGTGAGCGGGTACAGAATCCNNNNNNNNNNNNNNNNNAAATTTATTC
CATACGAACACTTCAAGATGGAGGGATTATTTTTAGTGAAGGAAATTCTG
AAGCAGGGGGACTGGATGTTAAAAATCGATCCCAACGATGCATATTTCGC
CATACCTTTAGATCAGCATTCTCAGAGGTTTGTGAGATTCGAATGGGACA
AGACCCTATACCAATTCCAGTGTCTCTGTTACGGTTTATCTCCAGCTCCA
AgagtgttttcaaaaattctgaagGTTCCAATTTCACTTCTGAGGAGATT
AGGGAttcgtttaatcatatttctgGACGATATCCTGCTAATAGCCTCGA
CTCCAGAGGAGTTGAGACAGATGAGGGACACAACTATTTTCCTTTTGCAA
AGTCTTGGGTTTCTAATAAATGTCAAGAAGTCAGTTTTCGAACCAACCCA
AAAGATAGAATTCTTGGGGATGATAATAGACTCAATCAAAATGACTCTAA
GCCTTCCAGAAGAGAAGGTGGTTG Run BLAST on NCBI transcript from alignment at sc0003735:7569..9242+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042853 ID=TCONS_00042853|Name=TCONS_00042853|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at sc0003735:7569..9242+ (Clytia hemisphaerica)
CTCCGCCCAATCTAATATTGGTTACCGCCCTCACTCGGATAGTAAATCTA
GGACATCGTCCTAAACTACCCCTCTTAGCTTTCAACTcgcaaaacaagat
ggcggaacAAGAGTAAGTGTaattaaaattctttgaattccCCAAATATC
CAAGTAATCTGACACATATTGAAAGTGATAAAAGGCTCAGCCATCACTGA
GAGGATAATGGGTCATAACTAAGTTACTCATTTCACTTCGAGATACAGGA
ACTAGCTGGTATAGCCATAGATTCTTTTTTTGCTCGTTGTTTTGTCAGAT
CAGAATCGAAAGAAACAATAGGTTAAGCCCCCAGGGCTAACCGTTCCACA
ATACTTATTACCTGTGGTAATATGTTTTCTCTTTTATGTCACAGGATTGC
CAACAAAGAGAAACAGGCAGCTGGCTCAAGTAAGAGAAGTGCTGACGTCC
TGGGAGAAGATGAACTTGAAGGGCCAAGAGCTAAAGTGTCTTGTCTAGAA
CTTTTTGAAGAGGACAATGCAATAAACTTAAGATCAGATCTAGCGGATCA
AATAAACAACTACATTCGCAGACATGTCTCGGACAAAATTCTAAAAGAGA
AGATTTTGGAAGACTATCCGATTCCATCTAACATAGACAAACCTCAGAAA
TTGGATATGTTTGTCGAACAAAGTTGCATACTATAGACGTTTAAACATGG
TTGAAAATATGACAGGCGACTCTAAGAGAGCCAAGGAGCTTCtaagtgaa
aatgaagaagttttcaatgaaaaatcttGCAACCTTTTTGGTGAAAAGTT
TGAGGATCTCATTGTCAAATTAGccaaatccaaaaagaaatcaaaagatg
cATTGTCAAATCTTGCATCACCCAAGCCGGTATCCAAGAAGCCCTTTCAC
AGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGATAGGGGGCGTGGAAA
CAGAGGTGCCTTCAGTGGTTGGTTGGCCAGGAGTCAGTCATCCTTCAACA
AAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGAAATTCTACCAATGGG
GGCTTTTTCCAAAGGAGATCCCTCAAACACCGTTAGCAGGAAGGACAAAG
TTCTTCCTGGAAAACTGGAAGAAACTAACAAACGATCAGATCTTATTAGA
GATGGTGAGCGGGTACAGAATCCNNNNNNNNNNNNNNNNNAAATTTATTC
CATACGAACACTTCAAGATGGAGGGATTATTTTTAGTGAAGGAAATTCTG
AAGCAGGGGGACTGGATGTTAAAAATCGATCCCAACGATGCATATTTCGC
CATACCTTTAGATCAGCATTCTCAGAGGTTTGTGAGATTCGAATGGGACA
AGACCCTATACCAATTCCAGTGTCTCTGTTACGGTTTATCTCCAGCTCCA
AgagtgttttcaaaaattctgaagGTTCCAATTTCACTTCTGAGGAGATT
AGGGAttcgtttaatcatatttctgGACGATATCCTGCTAATAGCCTCGA
CTCCAGAGGAGTTGAGACAGATGAGGGACACAACTATTTTCCTTTTGCAA
AGTCTTGGGTTTCTAATAAATGTCAAGAAGTCAGTTTTCGAACCAACCCA
AAAGATAGAATTCTTGGGGATGATAATAGACTCAATCAAAATGACTCTAA
GCCTTCCAGAAGAGAAGGTGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042853-exon-sc0003735-1491911889:7569..9242 | TCONS_00042853-exon-sc0003735-1491911889:7569..9242 | Clytia hemisphaerica | exon |
| TCONS_00042853-exon-sc0003735-1510915933:7569..9242 | TCONS_00042853-exon-sc0003735-1510915933:7569..9242 | Clytia hemisphaerica | exon |
| TCONS_00042853-exon-sc0003735-1575043694:7569..9242 | TCONS_00042853-exon-sc0003735-1575043694:7569..9242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003735 | supercontig | sc0003735:7569..9242 + |
Blast
The following BLAST results are available for this feature:
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