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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042849 ID=TCONS_00042849|Name=TCONS_00042849|organism=Clytia hemisphaerica|type=transcript|length=1195bp
CGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTACACCAGGTTT
TGAgaatcaattattattattttggagacattattttcgattttgcaata
agttttttgaaaaatgaaaacaaccattcaaaaaaaaaaaaaatgaattt
acggGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTAT
TTACACCAGGTTTTGAgaatcaattattattattttggagacATTATTTT
CGATTTTgcaataagtttttgaaaaattaaaacaaccattcaaaaattga
atttacgGGCGTTAGAACAAGTAAAGCGGCATTAGAATTCATGATTATTG
AAGTCAGCGGAGGAAAGACGGCGTTTAATAGTTTCGTGTCAGACATTTTT
AAATAGATCGGTTCCTTTTCGAATTATTCAAGTACATTATAAATTTTGAA
TAGTTTCAAAAATGAATAAATAAACAATTGTCCATTGGCTTCATGTCGAT
TTTAGGATGATGTTAAGATTTTCAACGGCCTAACGAGGGACTAAGGCATT
AAGGCGAACATGCTTGCAAAACAATCGTTAATTTCCCATTTTGAGTCAGA
GTATTGCGTctcttctatttcttctttttcatgctCAAAACGAACTGGTG
ACGTGACGTTAGAACAGGTGGAGGAGATATTAATGAGTTGACAAAATTAT
TGATCGGTCAGTGGACCGGATCGTATTATGTTTACCAGTCGATTGATTGG
TAGAGGCATTTTCCAGCCTGTGGGTGTCAGAAGAGGCATTAGAATTTAAT
GATTATTGATGAATTCGTTTGAACTTCGACGGACAACAGGTATGAGAGAC
TTACTTATTTAACTTCGTCCCCTAATTCCCAAATCACTTATCAATTTGCG
CTTTTATCGGTTAACCAAGGTTGAAGAAAAGGAAAGAAGAGATgatatta
ttaaaaaaaggcAGAAAAATGCAAAACAGCTACGAGGAGAGAAAGCAATA
TTTAATATCTCTAGTGGGGAATTAAAAGCAGCCAACAACGATTCAGATTG
AGCTCAGGTCGATGGGAGTAATAAGTTAGGTAGACACGGAGCATaccata
taaaaaaaaatatcattggAATTAAGCCTTACATAGCCATTACAAATCAA
TATATCACCTTTGAAAATGAGTTACCAATCCCTTTAAGAATTGAC Run BLAST on NCBI transcript from alignment at sc0003734:2..2648- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042849 ID=TCONS_00042849|Name=TCONS_00042849|organism=Clytia hemisphaerica|type=transcript|length=2647bp|location=Sequence derived from alignment at sc0003734:2..2648- (Clytia hemisphaerica)
CGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTACACCAGGTTT
TGAGAATCAATTATTATTATTTTGGAGACATTATTTTCGATTTTGCAATA
AGTTTTTTGAAAAATGAAAACAACCATTCAAAAAAAAAAAAAATGAATTT
ACGGGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTAT
TTACACCAGGTTTTGAGAATCAATTATTATTATTTTGGAGACATTATTTT
CGATTTTGCAATAAGTTTTTTGAAAAATGAAAACAACCATTCAAAAAATG
AATTTACGGGCGTTAGAGCGAATAAAACGGATAGCGTAGATGAACCAGAT
GGTATTTACACCAGGTTTCGAGAATCAATTATATTTTGGAGACATTATTT
TCGATTTTGCAATAAGTTTTTGAAAAATTANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGGCGTTAG
AGCGAATAAAGCGGATAGCGTAGATGAACCAGATGGTATTTACACCAGGT
TTCGAGAATCAATTATTATTTTGGAGACATTATTTTCGATTTTGCGATAA
ATTTTTTGAAAAATGAAAACAACCATTCAAAAATTGAATTCACGGGCGTT
AGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTACACCAG
GTTTCGAGAATCAATTATTATTATTTTGGAGACATTATTTTCGATTTTGC
AATAAGTTTTTGAAAAATTAAAACAACCATTCAAAAAATGAATTTACGGG
CGTTAGAGCGAATAAAGCGGATAACGTAGATGAACCAGATGGTATTTACA
CCAGGTTTCGAGAATCAATTATATATTGGAGACATTATTTTCGATTTTGC
AATAAGTTTTTTGAAAAATTAAAACAACCATTCAAAAATTGAATTTACGG
GCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTAC
ACCAGGTTTTGAGAATCAATTATTATTATTTTGGAGACANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
AAACAACCATTCAAAAAATGAATTTACGGGCGTTAGAGCGAATAAAGCGG
ATAGCGTAGATGAACCAGATGGTATTTACACCAGGTTTCGAGAATCAATT
ATATATTGGAGACATTATTTTCGATTTTGCAATAAGTTTTTGAAAAATTA
AAACAACCATTCAAAAATTGAATTTACGGGCATTAGAACAAGTAAAGCGG
ATAGCGTAGATGAACCAGATGGTATTTACACCAGGTTTCGAGAATCAATT
ATATTTCGGAGACATTATTTTCGATTTTGCAANACAACCATTCAAAAAAT
GAATTTACGGGCGTTAGAGCGAATAAAGCGGATAGCGTAGATGAACCAGA
TGGTATTTACACCAGGTTTCGAGAATCAATTATATTTCGGAGACATTATT
TTCGATTTTGCAATAAGTTTTTGAAAAATTAAAACAACCATTCAAAAATT
GAATTTACGGGCGTTAGAACAAGTAAAGCGGCATTAGAATTCATGATTAT
TGAAGTCAGCGGAGGAAAGACGGCGTTTAATAGTTTCGTGTCAGACATTT
TTAAATAGATCGGTTCCTTTTCGAATTATTCAAGTACATTATAAATTTTG
AATAGTTTCAAAAATGAATAAATAAACAATTGTCCATTGGCTTCATGTCG
ATTTTAGGATGATGTTAAGATTTTCAACGGCCTAACGAGGGACTAAGGCA
TTAAGGCGAACATGCTTGCAAAACAATCGTTAATTTCCCATTTTGAGTCA
GAGTATTGCGTCTCTTCTATTTCTTCTTTTTCATGCTCAAAACGAACTGG
TGACGTGACGTTAGAACAGGTGGAGGAGATATTAATGAGTTGACAAAATT
ATTGATCGGTCAGTGGACCGGATCGTATTATGTTTACCAGTCGATTGATT
GGTAGAGGCATTTTCCAGCCTGTGGGTGTCAGAAGAGGCATTAGAATTTA
ATGATTATTGATGAATTCGTTTGAACTTCGACGGACAACAGGTATGAGAG
ACTTACTTATTTAACTTCGTCCCCTAATTCCCAAATCACTTATCAATTTG
CGCTTTTATCGGTTAACCAAGGTTGAAGAAAAGGAAAGAAGAGATGATAT
TATTAAAAAAAGGCAGAAAAATGCAAAACAGCTACGAGGAGAGAAAGCAA
TATTTAATATCTCTAGTGGGGAATTAAAAGCAGCCAACAACGATTCAGAT
TGAGCTCAGGTCGATGGGAGTAATAAGTTAGGTAGACACGGAGCATACCA
TATAAAAAAAAATATCATTGGAATTAAGCCTTACATAGCCATTACAAATC
AATATATCACCTTTGAAAATGAGTTACCAATCCCTTTAAGAATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042849-exon-sc0003734-1575043694:2407..2648 | TCONS_00042849-exon-sc0003734-1575043694:2407..2648 | Clytia hemisphaerica | exon |
| TCONS_00042849-exon-sc0003734-1575043694:2..954 | TCONS_00042849-exon-sc0003734-1575043694:2..954 | Clytia hemisphaerica | exon |
| TCONS_00042849-exon-sc0003734-1510915933:2407..2648 | TCONS_00042849-exon-sc0003734-1510915933:2407..2648 | Clytia hemisphaerica | exon |
| TCONS_00042849-exon-sc0003734-1510915933:2..954 | TCONS_00042849-exon-sc0003734-1510915933:2..954 | Clytia hemisphaerica | exon |
| TCONS_00042849-exon-sc0003734-1491911889:2407..2648 | TCONS_00042849-exon-sc0003734-1491911889:2407..2648 | Clytia hemisphaerica | exon |
| TCONS_00042849-exon-sc0003734-1491911889:2..954 | TCONS_00042849-exon-sc0003734-1491911889:2..954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003734 | supercontig | sc0003734:2..2648 - |
Blast
The following BLAST results are available for this feature:
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