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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042848 ID=TCONS_00042848|Name=TCONS_00042848|organism=Clytia hemisphaerica|type=transcript|length=1042bp
ACGGGCGTTAGAGCGAATAAAGCGGATAGCGTAGATGAACCAGATGGTAT
TTACACCAGGTTTCGagaatcaattattattttggagacATTATTTTCGA
TTTTgcaataagtttttgaaaaattaaaacaaccattcaaaaattgaatt
tacgGGCGTTAGAACAAGTAAAGCGGCATTAGAATTCATGATTATTGAAG
TCAGCGGAGGAAAGACGGCGTTTAATAGTTTCGTGTCAGACATTTTTAAA
TAGATCGGTTCCTTTTCGAATTATTCAAGTACATTATAAATTTTGAATAG
TTTCAAAAATGAATAAATAAACAATTGTCCATTGGCTTCATGTCGATTTT
AGGATGATGTTAAGATTTTCAACGGCCTAACGAGGGACTAAGGCATTAAG
GCGAACATGCTTGCAAAACAATCGTTAATTTCCCATTTTGAGTCAGAGTA
TTGCGTctcttctatttcttctttttcatgctCAAAACGAACTGGTGACG
TGACGTTAGAACAGGTGGAGGAGATATTAATGAGTTGACAAAATTATTGA
TCGGTCAGTGGACCGGATCGTATTATGTTTACCAGTCGATTGATTGGTAG
AGGCATTTTCCAGCCTGTGGGTGTCAGAAGAGGCATTAGAATTTAATGAT
TATTGATGAATTCGTTTGAACTTCGACGGACAACAGGTATGAGAGACTTA
CTTATTTAACTTCGTCCCCTAATTCCCAAATCACTTATCAATTTGCGCTT
TTATCGGTTAACCAAGGTTGAAGAAAAGGAAAGAAGAGATgatattatta
aaaaaaggcAGAAAAATGCAAAACAGCTACGAGGAGAGAAAGCAATATTT
AATATCTCTAGTGGGGAATTAAAAGCAGCCAACAACGATTCAGATTGAGC
TCAGGTCGATGGGAGTAATAAGTTAGGTAGACACGGAGCATaccatataa
aaaaaaatatcattggAATTAAGCCTTACATAGCCATTACAAATCAATAT
ATCACCTTTGAAAATGAGTTACCAATCCCTTTAAGAATTGAC Run BLAST on NCBI transcript from alignment at sc0003734:2..2059- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042848 ID=TCONS_00042848|Name=TCONS_00042848|organism=Clytia hemisphaerica|type=transcript|length=2058bp|location=Sequence derived from alignment at sc0003734:2..2059- (Clytia hemisphaerica)
ACGGGCGTTAGAGCGAATAAAGCGGATAGCGTAGATGAACCAGATGGTAT
TTACACCAGGTTTCGAGAATCAATTATTATTTTGGAGACATTATTTTCGA
TTTTGCGATAAATTTTTTGAAAAATGAAAACAACCATTCAAAAATTGAAT
TCACGGGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGT
ATTTACACCAGGTTTCGAGAATCAATTATTATTATTTTGGAGACATTATT
TTCGATTTTGCAATAAGTTTTTGAAAAATTAAAACAACCATTCAAAAAAT
GAATTTACGGGCGTTAGAGCGAATAAAGCGGATAACGTAGATGAACCAGA
TGGTATTTACACCAGGTTTCGAGAATCAATTATATATTGGAGACATTATT
TTCGATTTTGCAATAAGTTTTTTGAAAAATTAAAACAACCATTCAAAAAT
TGAATTTACGGGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAG
ATAGTATTTACACCAGGTTTTGAGAATCAATTATTATTATTTTGGAGACA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTAAAACAACCATTCAAAAAATGAATTTACGGGCGTTAGAGC
GAATAAAGCGGATAGCGTAGATGAACCAGATGGTATTTACACCAGGTTTC
GAGAATCAATTATATATTGGAGACATTATTTTCGATTTTGCAATAAGTTT
TTGAAAAATTAAAACAACCATTCAAAAATTGAATTTACGGGCATTAGAAC
AAGTAAAGCGGATAGCGTAGATGAACCAGATGGTATTTACACCAGGTTTC
GAGAATCAATTATATTTCGGAGACATTATTTTCGATTTTGCAANACAACC
ATTCAAAAAATGAATTTACGGGCGTTAGAGCGAATAAAGCGGATAGCGTA
GATGAACCAGATGGTATTTACACCAGGTTTCGAGAATCAATTATATTTCG
GAGACATTATTTTCGATTTTGCAATAAGTTTTTGAAAAATTAAAACAACC
ATTCAAAAATTGAATTTACGGGCGTTAGAACAAGTAAAGCGGCATTAGAA
TTCATGATTATTGAAGTCAGCGGAGGAAAGACGGCGTTTAATAGTTTCGT
GTCAGACATTTTTAAATAGATCGGTTCCTTTTCGAATTATTCAAGTACAT
TATAAATTTTGAATAGTTTCAAAAATGAATAAATAAACAATTGTCCATTG
GCTTCATGTCGATTTTAGGATGATGTTAAGATTTTCAACGGCCTAACGAG
GGACTAAGGCATTAAGGCGAACATGCTTGCAAAACAATCGTTAATTTCCC
ATTTTGAGTCAGAGTATTGCGTCTCTTCTATTTCTTCTTTTTCATGCTCA
AAACGAACTGGTGACGTGACGTTAGAACAGGTGGAGGAGATATTAATGAG
TTGACAAAATTATTGATCGGTCAGTGGACCGGATCGTATTATGTTTACCA
GTCGATTGATTGGTAGAGGCATTTTCCAGCCTGTGGGTGTCAGAAGAGGC
ATTAGAATTTAATGATTATTGATGAATTCGTTTGAACTTCGACGGACAAC
AGGTATGAGAGACTTACTTATTTAACTTCGTCCCCTAATTCCCAAATCAC
TTATCAATTTGCGCTTTTATCGGTTAACCAAGGTTGAAGAAAAGGAAAGA
AGAGATGATATTATTAAAAAAAGGCAGAAAAATGCAAAACAGCTACGAGG
AGAGAAAGCAATATTTAATATCTCTAGTGGGGAATTAAAAGCAGCCAACA
ACGATTCAGATTGAGCTCAGGTCGATGGGAGTAATAAGTTAGGTAGACAC
GGAGCATACCATATAAAAAAAAATATCATTGGAATTAAGCCTTACATAGC
CATTACAAATCAATATATCACCTTTGAAAATGAGTTACCAATCCCTTTAA
GAATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042848-exon-sc0003734-1575043694:1971..2059 | TCONS_00042848-exon-sc0003734-1575043694:1971..2059 | Clytia hemisphaerica | exon |
| TCONS_00042848-exon-sc0003734-1575043694:2..954 | TCONS_00042848-exon-sc0003734-1575043694:2..954 | Clytia hemisphaerica | exon |
| TCONS_00042848-exon-sc0003734-1510915933:1971..2059 | TCONS_00042848-exon-sc0003734-1510915933:1971..2059 | Clytia hemisphaerica | exon |
| TCONS_00042848-exon-sc0003734-1510915933:2..954 | TCONS_00042848-exon-sc0003734-1510915933:2..954 | Clytia hemisphaerica | exon |
| TCONS_00042848-exon-sc0003734-1491911889:1971..2059 | TCONS_00042848-exon-sc0003734-1491911889:1971..2059 | Clytia hemisphaerica | exon |
| TCONS_00042848-exon-sc0003734-1491911889:2..954 | TCONS_00042848-exon-sc0003734-1491911889:2..954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003734 | supercontig | sc0003734:2..2059 - |
Blast
The following BLAST results are available for this feature:
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