TCONS_00042842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042842
Unique NameTCONS_00042842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042842 ID=TCONS_00042842|Name=TCONS_00042842|organism=Clytia hemisphaerica|type=transcript|length=353bp
CTCTTTCATTTTATCTTCTGAAATCTTGACTCTTCTTTGGATTAAAAACC
GTCGTTTTTCGATCGCATATTCTAAAGCCTCCTCAAAGTCCATATCTTCC
TCGTCTCTGACTCTGTGTAAAGTTTGCATTACAGAATCGTGAACTCTATC
TTTTTTCATAGCTCGAAGGAACAGGATTCTTTCTTTGTATGCATCACCAA
TTGATAAGCCACTTTCTTGGCATTCTTCAATCAATTTGTCCCAGATATCT
ATCCTCGTTTCATCCTCATCTTCAGATGATTCGCTGTCATCAGAGTCTAC
TTCTTCATCGGTAGTCATTGATTCATCGTCTGAATGATCAATCTCCTCGT
CTT
Run BLAST on NCBI

protein sequence of TCONS_00042842-protein

>TCONS_00042842-protein ID=TCONS_00042842-protein|Name=TCONS_00042842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
DEEIDHSDDESMTTDEEVDSDDSESSEDEDETRIDIWDKLIEECQESGLS
IGDAYKERILFLRAMKKDRVHDSVMQTLHRVRDEEDMDFEEALEYAIEKR
RFLIQRRVKISEDKMKE
Run BLAST on NCBI

transcript from alignment at sc0003727:9195..9547

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042842 ID=TCONS_00042842|Name=TCONS_00042842|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at sc0003727:9195..9547 (Clytia hemisphaerica)
AAGACGAGGAGATTGATCATTCAGACGATGAATCAATGACTACCGATGAA
GAAGTAGACTCTGATGACAGCGAATCATCTGAAGATGAGGATGAAACGAG
GATAGATATCTGGGACAAATTGATTGAAGAATGCCAAGAAAGTGGCTTAT
CAATTGGTGATGCATACAAAGAAAGAATCCTGTTCCTTCGAGCTATGAAA
AAAGATAGAGTTCACGATTCTGTAATGCAAACTTTACACAGAGTCAGAGA
CGAGGAAGATATGGACTTTGAGGAGGCTTTAGAATATGCGATCGAAAAAC
GACGGTTTTTAATCCAAAGAAGAGTCAAGATTTCAGAAGATAAAATGAAA
GAG

Coding sequence (CDS) from alignment at sc0003727:9195..9547

>TCONS_00042842 ID=TCONS_00042842|Name=TCONS_00042842|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0003727:9195..9547 (Clytia hemisphaerica)
GACGAGGAGATTGATCATTCAGACGATGAATCAATGACTACCGATGAAGA
AGTAGACTCTGATGACAGCGAATCATCTGAAGATGAGGATGAAACGAGGA
TAGATATCTGGGACAAATTGATTGAAGAATGCCAAGAAAGTGGCTTATCA
ATTGGTGATGCATACAAAGAAAGAATCCTGTTCCTTCGAGCTATGAAAAA
AGATAGAGTTCACGATTCTGTAATGCAAACTTTACACAGAGTCAGAGACG
AGGAAGATATGGACTTTGAGGAGGCTTTAGAATATGCGATCGAAAAACGA
CGGTTTTTAATCCAAAGAAGAGTCAAGATTTCAGAAGATAAAATGAAAGA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026634XLOC_026634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042842-exon-sc0003727-1491911889:9195..9547TCONS_00042842-exon-sc0003727-1491911889:9195..9547Clytia hemisphaericaexon
TCONS_00042842-exon-sc0003727-1510915933:9195..9547TCONS_00042842-exon-sc0003727-1510915933:9195..9547Clytia hemisphaericaexon
TCONS_00042842-exon-sc0003727-1575043694:9195..9547TCONS_00042842-exon-sc0003727-1575043694:9195..9547Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042842-proteinTCONS_00042842-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003727supercontigsc0003727:9195..9547 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.66124	1.57528	1.90051	1.18616	2.28375	3.85745	0	0.328166	0	0	0.279797	0	0	0	0	0	0	0.348568	0.282486	0	0.26452	0	0	0.360537	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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