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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042841 ID=TCONS_00042841|Name=TCONS_00042841|organism=Clytia hemisphaerica|type=transcript|length=769bp
CGATCATAAGTGAACTCAGGGGCTCCTTTTGGCCTTTTGGAACAGACCCA
AGACGACAACATTTTACGAGGTAAACGATCATATTTCATACGTGTAACGT
GGCCAAGCNNNNNNNGACGACAACATTTTACGAGGTAAACGATCATATTT
CATACGTGTAACGTGGCCAAGCCATCGGAGCTGCCGTTTGTAAACATAAC
TATCAATCGATAAAAGATTTATCTTATTCAATAACTCATCATTAGTTAAA
CGAAGCTCGAAAACATGTTTCATTGTAACACCACACATCGATCGAACACA
TCGTCGTTGGAATACGCGTAGAAGGTTaaacaatttttcagttagacACC
ACGATTCAGATCCGTATAAGAGGATTGGTAAGATAAGCCCTTTGTAAACA
GAACTTTTGACGGATAGAGATATGTGTGAGTTGGACAGGACACTCTTACG
TAAAGCTCCGAATGCGTTACTAGCCTTATGTATTCTATTATTTACATCCG
CTTCATCAGTACAGTTCCTCGAGAGTATTGTCCCAAGGTAGCAAAACTGA
TCGACGATCGGTAAGAAACAGTTGTCATCTAGGCGGATGGGCTCAAGATT
TGTGTTATCAAAAGATTCAGGGGTTGTGTAGAGCGTCCTTGGTGCTCcaa
caaaaagaatttcagtTTTCGAAGGCTTGTTTGGGTTTCGTACATCGCCG
ATGTGCACTTCCATTCCGAACCTCTGAAAATGCTTTATGAGCAACGGGCA
GAAGGTTTCAACATCATCT Run BLAST on NCBI transcript from alignment at sc0003727:3405..4672- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042841 ID=TCONS_00042841|Name=TCONS_00042841|organism=Clytia hemisphaerica|type=transcript|length=1268bp|location=Sequence derived from alignment at sc0003727:3405..4672- (Clytia hemisphaerica)
CGATCATAAGTGAACTCAGGGGCTCCTTTTGGCCTTTTGGAACAGACCCA
AGACGACAACATTTTACGAGGTAAACGATCATATTTCATACGTGTAACGT
GGCCAAGCNNNNNNNGACGACAACATTTTACGAGGTAAACGATCATATTT
CATACGTGTAACGTGGCCAAGCCATCGGAGCTGCCGTTTGTAAACATAAC
TATCAATCGATAAAAGATTTATCTTATTCAATAACTCATCATTAGTTAAA
CGAAGCTCGAAAACATGTTTCATTGTAACACCACACATTGACTAGACTAG
TAAACTAGTCGTTGAAAACAGACCCATATACAAAAAATTCAAGCTCCAAA
TAAAAAGAATCGAAGGGGTGAAGTTGCGTGTCTTTTCTGAATTTCAACGA
CTAGAATCTACTTCCCTCAAAAAATGTTGTTTAATTTTACAACTTTTTTT
AGGTTTTTGAGAATCCATCCAACTTTTTTGACTAAATGATATTTCATAGT
AACATAGAAGATGGGAACATATAAATAAATGAGCATTTCTAAAAACGCAA
TAAACAGAAAGAAAAATAAATGCAATCCTGCACGGGTCAGACATACAGAA
ATCTGTATGTCTCTCCTTACGATTTTAGGTGAAGAAAAAAAGGCGTTGGA
AGTAGCTTCTAGTCGGTTTATTTTCCTTTTTTCTCACGCGCGCTGAATAT
TTAATTAGTGTTTACATTATTTGATTGACAGTTTTATTATAAGGTTATAA
GTAATAACCGACTAGTTTATTAGTCTACACCACACATCGATCGAACACAT
CGTCGTTGGAATACGCGTAGAAGGTTAAACAATTTTTCAGTTAGACACCA
CGATTCAGATCCGTATAAGAGGATTGGTAAGATAAGCCCTTTGTAAACAG
AACTTTTGACGGATAGAGATATGTGTGAGTTGGACAGGACACTCTTACGT
AAAGCTCCGAATGCGTTACTAGCCTTATGTATTCTATTATTTACATCCGC
TTCATCAGTACAGTTCCTCGAGAGTATTGTCCCAAGGTAGCAAAACTGAT
CGACGATCGGTAAGAAACAGTTGTCATCTAGGCGGATGGGCTCAAGATTT
GTGTTATCAAAAGATTCAGGGGTTGTGTAGAGCGTCCTTGGTGCTCCAAC
AAAAAGAATTTCAGTTTTCGAAGGCTTGTTTGGGTTTCGTACATCGCCGA
TGTGCACTTCCATTCCGAACCTCTGAAAATGCTTTATGAGCAACGGGCAG
AAGGTTTCAACATCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042841-exon-sc0003727-1575043694:4387..4672 | TCONS_00042841-exon-sc0003727-1575043694:4387..4672 | Clytia hemisphaerica | exon |
| TCONS_00042841-exon-sc0003727-1575043694:3405..3887 | TCONS_00042841-exon-sc0003727-1575043694:3405..3887 | Clytia hemisphaerica | exon |
| TCONS_00042841-exon-sc0003727-1510915933:4387..4672 | TCONS_00042841-exon-sc0003727-1510915933:4387..4672 | Clytia hemisphaerica | exon |
| TCONS_00042841-exon-sc0003727-1510915933:3405..3887 | TCONS_00042841-exon-sc0003727-1510915933:3405..3887 | Clytia hemisphaerica | exon |
| TCONS_00042841-exon-sc0003727-1491911889:4387..4672 | TCONS_00042841-exon-sc0003727-1491911889:4387..4672 | Clytia hemisphaerica | exon |
| TCONS_00042841-exon-sc0003727-1491911889:3405..3887 | TCONS_00042841-exon-sc0003727-1491911889:3405..3887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003727 | supercontig | sc0003727:3405..4672 - |
Blast
The following BLAST results are available for this feature:
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