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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042838 ID=TCONS_00042838|Name=TCONS_00042838|organism=Clytia hemisphaerica|type=transcript|length=2041bp
GTTCTGCCAAAAATGCTACAATCATGCAGTACCATTTGGAGACATATCCC
ATGAAGACCTAAAACTCACCCTACAAGGTAAGAATTTTGNCCAAAAATGC
TACAATCATGCAGTACCATTTGGAGACATATCCCATGAAGACCTAAAACT
CACCCTACAAGGTaagaattttgatttctttatcgATCCTCTTAATGATA
TTAATGTGCAATTCTACAGAGATATAGATGAGGCTCTTGACAGCGACGAG
ACACAAGAATTGGGTTGTCCTTATTTGGCCTTGAGTGAGGTTAATGAAAA
GTACGACAAAAACAATCCCTGCTTAGCTTCAATGCACCTCAATATAGCAT
CACTTAACTTACATTTTGATGACCTCACAACTTTACTGGGTAGCTGTTCC
CTTCCTTTTAACTTCATTGGAATCACTGAAACAGGCTTCAAAGACTTGAA
CAAAGCCAAAAACTCTTCTAGCTTGATAAATTACAATCACTTTGACTGCT
GTACTGTGTCTAACCGAGGTGGAGCCAGAATCTATATCTCTGCAGGACGA
TTTGACTCAACCCCAAGAGATGATCTGGTTCTTTATCAAGAAAATAGGGA
CCTTTAGCATCAAGGACGGCGACTTGAATGAGGACGTGAAGTAAATCTTG
TAAAATCAAATGACAAATTTTATCCAATTTTATCTAGATTTAATATGACA
TGGACAAATTTGAAATGTAGtcaagtttttgtaaaaaatgatgttATAAT
TCTCGAGTGATTCATATAATTTAAAACTATTGTACTCTTCCTTTTACCGT
CTTCTTCCAAAAGGTGAcgacaaaaaataattttcaagtcGTCTTGAGAT
TTGAAAACGACCATTAATTACCTAATTAAAATTTACTATTCTCATGAGAA
AATTCATATGAAAAGAATAGAACTTATCTGAGATTATATACCAATCCCCT
AAGGGCTTTCTTTTTGCTCAATCTTGCCGTACTTTTTCAAAGTCGCCGTC
CTAGATGCTAAAGGTCCCTAATGAGATTGAGTCAGTGGTCCGGGAGATTG
TGtatgaaaatgacaaaaacttCATAGTTGCATGTATATACAAACATCCA
AATGCTGACTCTGAAAATTTCCTTTCTCTCTACTCAGATCTTCTCGACAA
AATAatctcagaaaataaaaaagcaattaTCATGGGAGATTTCAACTTTG
ATTTACTGATGGCTGATTCAAAACAGCCCACTGATGAGTTTCTCACTACA
AATTTAACTCACTGTTTCATTCCAACCATTACCAGACCTACCAGAATAAC
TCCTCATTCAAAAACTTTGATAGATAACATTTTTACGAACTTCATCACAG
CAAAACCCTGAAAACCACAGGCATGCAATCTCATATGCAGTATCTCGGAC
CATCTGCCTCAGTTACTTAAATTGGATCTGAAACCATATAAGTCTCTTCA
GTCAAATCGTCTAAGAGAAATTTCAGAAGTTTCACCAGAAACGATTTCTT
GATGGATTTTCTCTCTATCGACTGGGCAACTACTCTTCATGGGAAATCTC
CTTCTGACAAGCTCAATACTTTTATTACTAAAACTAATTCGGTTATAGAT
TCACTACCCTATTAAAACTACTTGGAAGAAGGCGTGCATACCAAAAAAAC
CCTGGATCACAAAAGGTCTCCTCAAATCAATCTCTTccaaaaacaaatta
tatacGAAATTTATGAAGGCAAAAGATCAAACCCTTAAAACACTAAAGCA
TGACAAGTTCAAAAAACACAGAAATTTACTTGCTAAATTGCTGCGAGCAT
GCAAAAACTTAtattacaaaacttttttttctgaacATAGTAATGATCTC
AAAAAAAAGCGGAAGGCTGTAAATGAAATAATAGGTGTAAAATCATCCAC
AGATCCTTCCCCAAAACTTATTCTTCAAGACAATGTACATATTAACAATG
ACAAAGACATGGCTGAAGTTTTCAACAATTTCTATGGGTCTATTGCagag
aaaacaaaacaacaaatccCTAGGACTGCTAAAACATTTTC Run BLAST on NCBI protein sequence of TCONS_00042838-protein >TCONS_00042838-protein ID=TCONS_00042838-protein|Name=TCONS_00042838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
FCQKCYNHAVPFGDISHEDLKLTLQGKNFXQKCYNHAVPFGDISHEDLKL
TLQGKNFDFFIDPLNDINVQFYRDIDEALDSDETQELGCPYLALSEVNEK
YDKNNPCLASMHLNIASLNLHFDDLTTLLGSCSLPFNFIGITETGFKDLN
KAKNSSSLINYNHFDCCTVSNRGGARIYISAGRFDSTPRDDLVLYQENRD
L Run BLAST on NCBI transcript from alignment at sc0003723:7231..9271 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042838 ID=TCONS_00042838|Name=TCONS_00042838|organism=Clytia hemisphaerica|type=transcript|length=2041bp|location=Sequence derived from alignment at sc0003723:7231..9271 (Clytia hemisphaerica)
GAAAATGTTTTAGCAGTCCTAGggatttgttgttttgttttctctGCAAT
AGACCCATAGAAATTGTTGAAAACTTCAGCCATGTCTTTGTCATTGTTAA
TATGTACATTGTCTTGAAGAATAAGTTTTGGGGAAGGATCTGTGGATGAT
TTTACACCTATTATTTCATTTACAGCCTTCCGCTTTTTTTTGAGATCATT
ACTATgttcagaaaaaaaagttttgtaataTAAGTTTTTGCATGCTCGCA
GCAATTTAGCAAGTAAATTTCTGTGTTTTTTGAACTTGTCATGCTTTAGT
GTTTTAAGGGTTTGATCTTTTGCCTTCATAAATTTCgtatataatttgtt
tttggAAGAGATTGATTTGAGGAGACCTTTTGTGATCCAGGGTTTTTTTG
GTATGCACGCCTTCTTCCAAGTAGTTTTAATAGGGTAGTGAATCTATAAC
CGAATTAGTTTTAGTAATAAAAGTATTGAGCTTGTCAGAAGGAGATTTCC
CATGAAGAGTAGTTGCCCAGTCGATAGAGAGAAAATCCATCAAGAAATCG
TTTCTGGTGAAACTTCTGAAATTTCTCTTAGACGATTTGACTGAAGAGAC
TTATATGGTTTCAGATCCAATTTAAGTAACTGAGGCAGATGGTCCGAGAT
ACTGCATATGAGATTGCATGCCTGTGGTTTTCAGGGTTTTGCTGTGATGA
AGTTCGTAAAAATGTTATCTATCAAAGTTTTTGAATGAGGAGTTATTCTG
GTAGGTCTGGTAATGGTTGGAATGAAACAGTGAGTTAAATTTGTAGTGAG
AAACTCATCAGTGGGCTGTTTTGAATCAGCCATCAGTAAATCAAAGTTGA
AATCTCCCATGAtaattgcttttttattttctgagatTATTTTGTCGAGA
AGATCTGAGTAGAGAGAAAGGAAATTTTCAGAGTCAGCATTTGGATGTTT
GTATATACATGCAACTATGaagtttttgtcattttcataCACAATCTCCC
GGACCACTGACTCAATCTCATTAGGGACCTTTAGCATCTAGGACGGCGAC
TTTGAAAAAGTACGGCAAGATTGAGCAAAAAGAAAGCCCTTAGGGGATTG
GTATATAATCTCAGATAAGTTCTATTCTTTTCATATGAATTTTCTCATGA
GAATAGTAAATTTTAATTAGGTAATTAATGGTCGTTTTCAAATCTCAAGA
CgacttgaaaattattttttgtcgTCACCTTTTGGAAGAAGACGGTAAAA
GGAAGAGTACAATAGTTTTAAATTATATGAATCACTCGAGAATTATaaca
tcattttttacaaaaacttgaCTACATTTCAAATTTGTCCATGTCATATT
AAATCTAGATAAAATTGGATAAAATTTGTCATTTGATTTTACAAGATTTA
CTTCACGTCCTCATTCAAGTCGCCGTCCTTGATGCTAAAGGTCCCTATTT
TCTTGATAAAGAACCAGATCATCTCTTGGGGTTGAGTCAAATCGTCCTGC
AGAGATATAGATTCTGGCTCCACCTCGGTTAGACACAGTACAGCAGTCAA
AGTGATTGTAATTTATCAAGCTAGAAGAGTTTTTGGCTTTGTTCAAGTCT
TTGAAGCCTGTTTCAGTGATTCCAATGAAGTTAAAAGGAAGGGAACAGCT
ACCCAGTAAAGTTGTGAGGTCATCAAAATGTAAGTTAAGTGATGCTATAT
TGAGGTGCATTGAAGCTAAGCAGGGATTGTTTTTGTCGTACTTTTCATTA
ACCTCACTCAAGGCCAAATAAGGACAACCCAATTCTTGTGTCTCGTCGCT
GTCAAGAGCCTCATCTATATCTCTGTAGAATTGCACATTAATATCATTAA
GAGGATcgataaagaaatcaaaattcttACCTTGTAGGGTGAGTTTTAGG
TCTTCATGGGATATGTCTCCAAATGGTACTGCATGATTGTAGCATTTTTG
GNCAAAATTCTTACCTTGTAGGGTGAGTTTTAGGTCTTCATGGGATATGT
CTCCAAATGGTACTGCATGATTGTAGCATTTTTGGCAGAAC Coding sequence (CDS) from alignment at sc0003723:7231..9271 >TCONS_00042838 ID=TCONS_00042838|Name=TCONS_00042838|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0003723:7231..9271 (Clytia hemisphaerica)
CTAAAGGTCCCTATTTTCTTGATAAAGAACCAGATCATCTCTTGGGGTTG
AGTCAAATCGTCCTGCAGAGATATAGATTCTGGCTCCACCTCGGTTAGAC
ACAGTACAGCAGTCAAAGTGATTGTAATTTATCAAGCTAGAAGAGTTTTT
GGCTTTGTTCAAGTCTTTGAAGCCTGTTTCAGTGATTCCAATGAAGTTAA
AAGGAAGGGAACAGCTACCCAGTAAAGTTGTGAGGTCATCAAAATGTAAG
TTAAGTGATGCTATATTGAGGTGCATTGAAGCTAAGCAGGGATTGTTTTT
GTCGTACTTTTCATTAACCTCACTCAAGGCCAAATAAGGACAACCCAATT
CTTGTGTCTCGTCGCTGTCAAGAGCCTCATCTATATCTCTGTAGAATTGC
ACATTAATATCATTAAGAGGATcgataaagaaatcaaaattcttACCTTG
TAGGGTGAGTTTTAGGTCTTCATGGGATATGTCTCCAAATGGTACTGCAT
GATTGTAGCATTTTTGGNCAAAATTCTTACCTTGTAGGGTGAGTTTTAGG
TCTTCATGGGATATGTCTCCAAATGGTACTGCATGATTGTAGCATTTTTG
GCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042838-exon-sc0003723-1491911889:7231..9271 | TCONS_00042838-exon-sc0003723-1491911889:7231..9271 | Clytia hemisphaerica | exon |
| TCONS_00042838-exon-sc0003723-1510915933:7231..9271 | TCONS_00042838-exon-sc0003723-1510915933:7231..9271 | Clytia hemisphaerica | exon |
| TCONS_00042838-exon-sc0003723-1575043694:7231..9271 | TCONS_00042838-exon-sc0003723-1575043694:7231..9271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003723 | supercontig | sc0003723:7231..9271 . |
Blast
The following BLAST results are available for this feature:
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